Wall clock time and date at job start Tue Mar 31 2020 17:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35756 * 116.99890 * 2 1 4 4 C 1.39214 * 120.81454 * 359.71466 * 3 2 1 5 5 C 1.38308 * 119.28624 * 179.79898 * 4 3 2 6 6 N 1.31616 * 120.97388 * 0.48874 * 5 4 3 7 7 C 1.32805 * 121.77678 * 359.74497 * 6 5 4 8 8 C 1.48182 * 119.69345 * 179.97438 * 7 6 5 9 9 O 1.21517 * 119.99978 * 189.90249 * 8 7 6 10 10 N 1.34770 * 120.00544 * 9.89984 * 8 7 6 11 11 C 1.46931 * 120.62788 * 8.35112 * 10 8 7 12 12 C 1.53191 * 108.77070 * 126.37207 * 11 10 8 13 13 C 1.53038 * 109.31777 * 54.63908 * 12 11 10 14 14 H 1.08994 * 109.46032 * 58.63387 * 13 12 11 15 15 C 1.52995 * 109.46530 * 178.61488 * 13 12 11 16 16 C 1.53049 * 109.53423 * 298.63329 * 13 12 11 17 17 C 1.46931 * 120.63444 * 188.07770 * 10 8 7 18 18 H 1.08997 * 109.58777 * 113.84238 * 17 10 8 19 19 C 1.52998 * 109.58152 * 353.41516 * 17 10 8 20 20 N 1.46506 * 109.47132 * 70.07951 * 19 17 10 21 21 C 1.36933 * 119.99781 * 174.63015 * 20 19 17 22 22 H 1.08002 * 120.00196 * 359.97438 * 21 20 19 23 23 C 1.38820 * 119.99589 * 179.97438 * 21 20 19 24 24 N 1.31607 * 120.00154 * 0.02562 * 23 21 20 25 25 Si 1.86802 * 119.99679 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.46995 * 60.00100 * 25 23 21 27 27 H 1.48499 * 109.47164 * 179.97438 * 25 23 21 28 28 H 1.48495 * 109.47235 * 300.00511 * 25 23 21 29 29 C 1.39101 * 120.60650 * 0.02562 * 7 6 5 30 30 H 1.09002 * 109.47000 * 300.00442 * 1 2 3 31 31 H 1.09010 * 109.46986 * 60.00285 * 1 2 3 32 32 H 1.08999 * 109.47289 * 179.97438 * 1 2 3 33 33 H 1.08000 * 120.35366 * 0.02562 * 4 3 2 34 34 H 1.08001 * 119.51523 * 180.23493 * 5 4 3 35 35 H 1.08995 * 109.59186 * 246.15652 * 11 10 8 36 36 H 1.09003 * 109.58638 * 6.44283 * 11 10 8 37 37 H 1.09001 * 109.49733 * 174.59226 * 12 11 10 38 38 H 1.09001 * 109.49825 * 294.64934 * 12 11 10 39 39 H 1.09004 * 109.47095 * 59.99215 * 15 13 12 40 40 H 1.08994 * 109.47429 * 179.97438 * 15 13 12 41 41 H 1.09004 * 109.46842 * 299.99800 * 15 13 12 42 42 H 1.08997 * 109.49442 * 181.31502 * 16 13 12 43 43 H 1.08998 * 109.49818 * 301.37932 * 16 13 12 44 44 H 1.08998 * 109.46666 * 190.07467 * 19 17 10 45 45 H 1.09000 * 109.47704 * 310.07629 * 19 17 10 46 46 H 0.96996 * 119.99709 * 354.62802 * 20 19 17 47 47 H 0.96999 * 120.00147 * 179.97438 * 24 23 21 48 48 H 1.07994 * 120.50787 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0453 1.2096 0.0000 4 6 1.3037 2.3878 -0.0060 5 6 1.9642 3.6030 -0.0015 6 7 3.2792 3.6592 -0.0014 7 6 4.0261 2.5611 -0.0005 8 6 5.5033 2.6782 -0.0010 9 8 6.1909 1.6925 -0.1812 10 7 6.0844 3.8777 0.1982 11 6 5.2812 5.0416 0.5972 12 6 5.8901 5.6498 1.8645 13 6 7.3679 5.9611 1.6169 14 1 7.4580 6.6507 0.7777 15 6 7.9709 6.6006 2.8692 16 6 8.1168 4.6659 1.2948 17 6 7.5340 4.0452 0.0265 18 1 7.7281 4.7025 -0.8210 19 6 8.1822 2.6813 -0.2193 20 7 7.7984 2.1900 -1.5451 21 6 8.3476 1.0342 -2.0324 22 1 9.0640 0.4849 -1.4395 23 6 7.9835 0.5684 -3.2884 24 7 7.1109 1.2381 -4.0110 25 14 8.7332 -1.0080 -3.9534 26 1 8.4042 -2.1348 -3.0437 27 1 8.1830 -1.2864 -5.3043 28 1 10.2078 -0.8566 -4.0404 29 6 3.4346 1.3021 -0.0002 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3634 -1.0276 -0.0005 33 1 0.2243 2.3532 -0.0102 34 1 1.3926 4.5193 -0.0023 35 1 5.2878 5.7817 -0.2029 36 1 4.2565 4.7275 0.7960 37 1 5.3619 6.5692 2.1168 38 1 5.8000 4.9410 2.6877 39 1 7.8803 5.9113 3.7087 40 1 9.0235 6.8220 2.6932 41 1 7.4384 7.5238 3.0981 42 1 9.1734 4.8851 1.1416 43 1 8.0068 3.9663 2.1235 44 1 9.2665 2.7800 -0.1683 45 1 7.8453 1.9765 0.5408 46 1 7.1553 2.6836 -2.0777 47 1 6.8567 0.9128 -4.8888 48 1 4.0435 0.4103 0.0002 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001565969969.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:13 Heat of formation + Delta-G solvation = 30.107902 kcal Electronic energy + Delta-G solvation = -30141.487572 eV Core-core repulsion = 26199.483988 eV Total energy + Delta-G solvation = -3942.003584 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.88189 -39.79273 -38.21145 -37.12458 -34.42543 -33.57906 -32.11382 -31.53384 -30.91887 -29.70891 -28.18236 -27.70142 -25.38557 -24.19264 -23.46654 -22.76527 -22.53427 -21.34158 -19.98101 -19.46329 -17.84486 -17.25329 -16.70133 -16.11428 -16.00595 -15.67374 -15.25550 -14.96420 -14.84411 -14.49582 -14.15091 -14.03149 -13.85067 -13.53807 -13.51689 -13.24518 -12.90695 -12.67932 -12.64251 -12.46846 -12.06557 -11.83319 -11.72505 -11.54790 -11.46814 -11.34390 -10.90715 -10.73873 -10.66411 -10.65142 -10.44189 -10.20050 -9.82822 -9.47075 -9.19272 -9.07520 -8.82848 -8.69074 -8.26729 -7.92067 -6.50733 -5.53542 -2.71228 0.82575 1.31967 2.92420 3.23017 3.55798 3.58275 3.61109 3.62870 4.11479 4.35115 4.55953 4.76526 4.78177 4.88206 4.90668 4.91967 4.96766 5.03096 5.15856 5.22311 5.26280 5.41122 5.59391 5.66772 5.69312 5.72716 5.73679 5.80275 5.83140 5.85590 5.92263 6.07574 6.10879 6.20395 6.22393 6.23295 6.32554 6.33268 6.51684 6.63365 6.67107 6.85243 7.07199 7.13550 7.44129 7.84276 7.89698 8.10229 8.64612 8.94790 9.75409 10.35930 10.70292 11.69991 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.006744 B = 0.005955 C = 0.003369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4150.632707 B = 4700.937864 C = 8308.295585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.308 6.308 3 C 0.164 3.836 4 C -0.257 4.257 5 C 0.126 3.874 6 N -0.477 5.477 7 C 0.135 3.865 8 C 0.530 3.470 9 O -0.440 6.440 10 N -0.595 5.595 11 C 0.078 3.922 12 C -0.128 4.128 13 C -0.094 4.094 14 H 0.069 0.931 15 C -0.144 4.144 16 C -0.119 4.119 17 C 0.141 3.859 18 H 0.068 0.932 19 C 0.155 3.845 20 N -0.696 5.696 21 C -0.206 4.206 22 H 0.066 0.934 23 C -0.022 4.022 24 N -0.936 5.936 25 Si 0.903 3.097 26 H -0.289 1.289 27 H -0.294 1.294 28 H -0.289 1.289 29 C -0.144 4.144 30 H 0.057 0.943 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.138 0.862 34 H 0.161 0.839 35 H 0.055 0.945 36 H 0.143 0.857 37 H 0.066 0.934 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.065 0.935 44 H 0.015 0.985 45 H 0.047 0.953 46 H 0.380 0.620 47 H 0.251 0.749 48 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.388 9.319 14.014 21.505 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.111 3.889 4 C -0.279 4.279 5 C -0.033 4.033 6 N -0.193 5.193 7 C -0.002 4.002 8 C 0.313 3.687 9 O -0.308 6.308 10 N -0.331 5.331 11 C -0.045 4.045 12 C -0.167 4.167 13 C -0.112 4.112 14 H 0.087 0.913 15 C -0.202 4.202 16 C -0.158 4.158 17 C 0.038 3.962 18 H 0.086 0.914 19 C 0.027 3.973 20 N -0.338 5.338 21 C -0.338 4.338 22 H 0.084 0.916 23 C -0.216 4.216 24 N -0.586 5.586 25 Si 0.735 3.265 26 H -0.216 1.216 27 H -0.220 1.220 28 H -0.216 1.216 29 C -0.166 4.166 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.121 0.879 33 H 0.156 0.844 34 H 0.178 0.822 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.084 0.916 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.084 0.916 44 H 0.033 0.967 45 H 0.065 0.935 46 H 0.213 0.787 47 H 0.061 0.939 48 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -12.357 9.112 13.865 20.687 hybrid contribution -0.698 -1.261 -0.753 1.626 sum -13.054 7.851 13.112 20.099 Atomic orbital electron populations 1.23126 0.77984 1.04302 1.01492 1.86119 1.21684 1.26252 1.87824 1.19224 0.92184 0.84640 0.92857 1.22232 1.01309 0.93260 1.11053 1.22657 0.90409 0.96974 0.93254 1.67666 1.06381 1.30153 1.15118 1.21410 0.95272 0.88159 0.95315 1.17762 0.85109 0.84390 0.81392 1.91142 1.60239 1.36487 1.42905 1.47554 1.07277 1.08886 1.69374 1.22793 0.99060 0.87700 0.94902 1.22028 0.95410 1.00409 0.98840 1.21144 0.95232 0.96873 0.97968 0.91257 1.21818 1.00477 1.00132 0.97740 1.21877 0.99412 0.96436 0.98109 1.21437 0.79273 0.99026 0.96464 0.91365 1.21024 0.94536 0.90784 0.90923 1.42306 1.50723 1.27070 1.13733 1.19153 1.17096 0.99602 0.97978 0.91587 1.24633 1.00304 0.99093 0.97617 1.69650 1.36627 1.40262 1.12067 0.86306 0.78366 0.84004 0.77836 1.21568 1.21990 1.21603 1.21407 0.91769 1.00113 1.03316 0.92455 0.92330 0.87936 0.84441 0.82207 0.92698 0.84035 0.91574 0.92193 0.92923 0.92854 0.93027 0.91023 0.91643 0.96737 0.93530 0.78689 0.93932 0.82721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.84 101.05 0.99 1.20 16 2 O -0.31 -4.07 10.51 -18.98 -0.20 -4.27 16 3 C 0.16 2.34 6.73 -38.85 -0.26 2.08 16 4 C -0.26 -2.88 9.12 -39.19 -0.36 -3.24 16 5 C 0.13 1.44 11.17 -17.62 -0.20 1.25 16 6 N -0.48 -7.07 6.16 -9.87 -0.06 -7.13 16 7 C 0.13 2.41 6.56 -83.04 -0.55 1.86 16 8 C 0.53 10.85 7.03 -12.18 -0.09 10.76 16 9 O -0.44 -10.81 10.34 5.35 0.06 -10.75 16 10 N -0.59 -10.53 2.98 -166.45 -0.50 -11.03 16 11 C 0.08 1.10 5.87 -3.71 -0.02 1.08 16 12 C -0.13 -1.50 5.36 -26.61 -0.14 -1.64 16 13 C -0.09 -1.10 2.68 -90.58 -0.24 -1.34 16 14 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 15 C -0.14 -1.41 9.19 37.15 0.34 -1.07 16 16 C -0.12 -1.68 4.61 -26.83 -0.12 -1.80 16 17 C 0.14 2.54 2.91 -67.82 -0.20 2.34 16 18 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 19 C 0.15 3.45 4.86 -4.04 -0.02 3.43 16 20 N -0.70 -19.07 3.30 -59.90 -0.20 -19.26 16 21 C -0.21 -6.20 9.78 -15.06 -0.15 -6.34 16 22 H 0.07 1.94 7.83 -52.49 -0.41 1.53 16 23 C -0.02 -0.67 5.50 -17.43 -0.10 -0.76 16 24 N -0.94 -30.12 13.06 55.49 0.72 -29.39 16 25 Si 0.90 23.97 29.55 -169.99 -5.02 18.94 16 26 H -0.29 -7.61 7.11 56.52 0.40 -7.20 16 27 H -0.29 -7.82 7.11 56.52 0.40 -7.42 16 28 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 29 C -0.14 -2.52 9.59 -38.89 -0.37 -2.89 16 30 H 0.06 0.35 7.72 -51.93 -0.40 -0.05 16 31 H 0.06 0.40 7.70 -51.92 -0.40 0.00 16 32 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.14 1.06 6.45 -52.49 -0.34 0.72 16 34 H 0.16 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.14 1.97 4.07 -81.79 -0.33 1.64 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 43 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 44 H 0.02 0.33 8.12 -51.93 -0.42 -0.09 16 45 H 0.05 1.12 6.18 -51.93 -0.32 0.80 16 46 H 0.38 11.14 7.13 -40.82 -0.29 10.84 16 47 H 0.25 7.85 8.31 -40.82 -0.34 7.51 16 48 H 0.16 2.95 7.67 -52.49 -0.40 2.55 16 LS Contribution 376.80 15.07 5.68 5.68 Total: -1.00 -35.67 376.80 -8.52 -44.19 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: -7.53 Total: 8.11 kcal Atomic # 6 Polarization: 6.40 SS G_CDS: -1.47 Total: 4.92 kcal Atomic # 7 Polarization: -66.79 SS G_CDS: -0.03 Total: -66.82 kcal Atomic # 8 Polarization: -14.88 SS G_CDS: -0.14 Total: -15.02 kcal Atomic # 14 Polarization: 23.97 SS G_CDS: -5.02 Total: 18.94 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -35.67 -8.52 -44.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001565969969.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.295 kcal (2) G-P(sol) polarization free energy of solvation -35.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds