Wall clock time and date at job start Tue Mar 31 2020 17:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09002 * 110.64009 * 2 1 4 4 C 1.54322 * 110.71873 * 123.13408 * 2 1 3 5 5 N 1.47026 * 107.26731 * 96.16871 * 4 2 1 6 6 C 1.34780 * 125.64580 * 178.90601 * 5 4 2 7 7 O 1.21280 * 119.99671 * 180.02562 * 6 5 4 8 8 C 1.50698 * 120.00224 * 0.02620 * 6 5 4 9 9 C 1.50692 * 109.47341 * 180.02562 * 8 6 5 10 10 C 1.35458 * 126.77995 * 89.71113 * 9 8 6 11 11 C 1.41376 * 103.98963 * 179.91149 * 10 9 8 12 12 C 1.50694 * 126.80518 * 180.09440 * 11 10 9 13 13 C 1.53005 * 117.49883 * 343.91080 * 12 11 10 14 14 C 1.53003 * 60.00079 * 252.50968 * 13 12 11 15 15 N 1.30184 * 106.39327 * 0.35356 * 11 10 9 16 16 O 1.20921 * 111.60199 * 359.77504 * 15 11 10 17 17 C 1.47418 * 108.70544 * 358.94322 * 5 4 2 18 18 C 1.54909 * 104.83141 * 24.12511 * 17 5 4 19 19 H 1.09000 * 111.00575 * 81.06483 * 18 17 5 20 20 C 1.52999 * 111.00513 * 204.91782 * 18 17 5 21 21 N 1.46510 * 109.47093 * 287.19524 * 20 18 17 22 22 C 1.36936 * 120.00047 * 179.97438 * 21 20 18 23 23 H 1.08000 * 119.99773 * 0.02562 * 22 21 20 24 24 C 1.38809 * 119.99683 * 180.02562 * 22 21 20 25 25 N 1.31615 * 120.00166 * 0.02562 * 24 22 21 26 26 Si 1.86805 * 119.99637 * 180.02562 * 24 22 21 27 27 H 1.48495 * 109.47259 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.47203 * 120.00202 * 26 24 22 29 29 H 1.48507 * 109.46794 * 239.99961 * 26 24 22 30 30 H 1.08993 * 109.47070 * 298.31953 * 1 2 3 31 31 H 1.08997 * 109.46759 * 58.31483 * 1 2 3 32 32 H 1.09000 * 109.47239 * 178.31416 * 1 2 3 33 33 H 1.08999 * 109.88752 * 215.59028 * 4 2 1 34 34 H 1.09001 * 109.88234 * 336.60339 * 4 2 1 35 35 H 1.09003 * 109.47358 * 300.00445 * 8 6 5 36 36 H 1.08998 * 109.47198 * 60.00286 * 8 6 5 37 37 H 1.08001 * 128.00342 * 0.02562 * 10 9 8 38 38 H 1.08997 * 115.55309 * 129.61687 * 12 11 10 39 39 H 1.08996 * 117.49735 * 359.97438 * 13 12 11 40 40 H 1.09000 * 117.49889 * 145.02018 * 13 12 11 41 41 H 1.08997 * 117.49736 * 252.50847 * 14 13 12 42 42 H 1.09000 * 117.49788 * 107.48878 * 14 13 12 43 43 H 1.09004 * 110.36674 * 142.96418 * 17 5 4 44 44 H 1.08998 * 110.36982 * 265.17605 * 17 5 4 45 45 H 1.08998 * 109.47279 * 47.19415 * 20 18 17 46 46 H 1.09002 * 109.47121 * 167.19866 * 20 18 17 47 47 H 0.97001 * 119.99446 * 0.02562 * 21 20 18 48 48 H 0.97003 * 120.00123 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9143 1.0201 0.0000 4 6 2.0760 -0.7890 1.2087 5 7 2.3715 -2.1518 0.7429 6 6 2.8861 -3.1447 1.4951 7 8 3.0903 -4.2345 1.0034 8 6 3.2078 -2.9009 2.9470 9 6 3.7669 -4.1608 3.5561 10 6 5.0695 -4.5294 3.6047 11 6 5.0477 -5.7743 4.2743 12 6 6.2343 -6.6420 4.6059 13 6 7.5469 -6.3532 3.8747 14 6 6.7334 -7.6003 3.5226 15 7 3.7988 -6.0252 4.5428 16 8 3.0729 -5.1407 4.1516 17 6 2.0126 -2.2521 -0.6834 18 6 2.0790 -0.7976 -1.2123 19 1 3.1061 -0.5099 -1.4365 20 6 1.1816 -0.6184 -2.4384 21 7 1.7915 -1.2851 -3.5917 22 6 1.1639 -1.2590 -4.8085 23 1 0.2195 -0.7465 -4.9181 24 6 1.7415 -1.8911 -5.9009 25 7 2.8921 -2.5160 -5.7672 26 14 0.8858 -1.8549 -7.5610 27 1 -0.3842 -1.0939 -7.4468 28 1 1.7685 -1.1987 -8.5588 29 1 0.5925 -3.2438 -7.9972 30 1 -0.3633 0.4875 0.9046 31 1 -0.3633 0.5398 -0.8745 32 1 -0.3634 -1.0272 -0.0302 33 1 2.9868 -0.3178 1.5783 34 1 1.3273 -0.8196 2.0002 35 1 3.9444 -2.1013 3.0267 36 1 2.3000 -2.6127 3.4769 37 1 5.9265 -3.9949 3.2222 38 1 6.2977 -6.9760 5.6415 39 1 7.5520 -5.5360 3.1535 40 1 8.4742 -6.4972 4.4293 41 1 7.1255 -8.5647 3.8456 42 1 6.2034 -7.6032 2.5701 43 1 2.7294 -2.8809 -1.2117 44 1 1.0047 -2.6520 -0.7938 45 1 0.2037 -1.0573 -2.2403 46 1 1.0664 0.4443 -2.6521 47 1 2.6394 -1.7456 -3.4930 48 1 3.2960 -2.9575 -6.5307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569839305.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:36 Heat of formation + Delta-G solvation = 62.825358 kcal Electronic energy + Delta-G solvation = -28191.124205 eV Core-core repulsion = 24250.539356 eV Total energy + Delta-G solvation = -3940.584849 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -45.06673 -40.27526 -38.14931 -37.83118 -34.72432 -33.89039 -33.14552 -32.80547 -31.19851 -29.59229 -28.34066 -26.64234 -25.33140 -24.85423 -23.36314 -22.98178 -22.27399 -21.79701 -20.34546 -19.34468 -19.18950 -17.95925 -17.39882 -17.14689 -16.78694 -16.20148 -16.06508 -15.47587 -14.98081 -14.80492 -14.69864 -14.25030 -14.03498 -13.73750 -13.51077 -13.21886 -12.98082 -12.79655 -12.52150 -12.33099 -12.31608 -12.23252 -11.87867 -11.83817 -11.72171 -11.61576 -11.31133 -11.05459 -10.86646 -10.71272 -10.58017 -10.45875 -10.36739 -10.09235 -9.98470 -9.92028 -9.69689 -9.46554 -8.88745 -8.64531 -6.93472 -5.76711 -3.06072 1.25560 2.00225 2.51272 2.73567 3.09288 3.36167 3.43451 3.48744 3.51310 3.84475 4.17955 4.29791 4.46423 4.49524 4.57228 4.59805 4.69305 4.77623 4.81665 4.84896 4.92232 5.00225 5.20908 5.26982 5.29515 5.37170 5.38691 5.44878 5.48425 5.52693 5.58642 5.71931 5.74906 5.79176 5.81228 5.84074 5.92963 6.01421 6.11127 6.16473 6.28088 6.34220 6.42116 6.66435 6.79901 7.46124 7.69658 8.06676 8.12090 8.41490 9.52862 10.09794 10.43736 11.46005 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013219 B = 0.002382 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2117.597001 B =11751.342919 C =13331.665219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.101 3.899 5 N -0.615 5.615 6 C 0.526 3.474 7 O -0.528 6.528 8 C -0.057 4.057 9 C -0.008 4.008 10 C -0.213 4.213 11 C 0.048 3.952 12 C -0.088 4.088 13 C -0.163 4.163 14 C -0.163 4.163 15 N -0.358 5.358 16 O 0.107 5.893 17 C 0.117 3.883 18 C -0.101 4.101 19 H 0.085 0.915 20 C 0.165 3.835 21 N -0.734 5.734 22 C -0.241 4.241 23 H 0.071 0.929 24 C -0.013 4.013 25 N -0.931 5.931 26 Si 0.906 3.094 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.058 0.942 33 H 0.068 0.932 34 H 0.070 0.930 35 H 0.126 0.874 36 H 0.118 0.882 37 H 0.170 0.830 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.025 0.975 46 H 0.024 0.976 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.717 2.188 24.757 25.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.022 4.022 5 N -0.349 5.349 6 C 0.313 3.687 7 O -0.403 6.403 8 C -0.098 4.098 9 C -0.072 4.072 10 C -0.234 4.234 11 C -0.110 4.110 12 C -0.107 4.107 13 C -0.200 4.200 14 C -0.201 4.201 15 N -0.061 5.061 16 O 0.039 5.961 17 C -0.004 4.004 18 C -0.121 4.121 19 H 0.104 0.896 20 C 0.037 3.963 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.089 0.911 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.737 3.263 27 H -0.206 1.206 28 H -0.219 1.219 29 H -0.219 1.219 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.144 0.856 36 H 0.136 0.864 37 H 0.187 0.813 38 H 0.140 0.860 39 H 0.119 0.881 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.101 0.899 44 H 0.090 0.910 45 H 0.043 0.957 46 H 0.042 0.958 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 4.080 0.544 25.027 25.363 hybrid contribution 0.424 0.415 -1.296 1.425 sum 4.504 0.959 23.731 24.174 Atomic orbital electron populations 1.21851 0.93995 1.02465 1.01930 1.22189 0.96710 0.99172 0.93555 0.89180 1.22222 1.00083 0.82234 0.97683 1.48510 1.62775 1.11394 1.12246 1.19816 0.77820 0.83782 0.87253 1.90797 1.52550 1.23530 1.73469 1.20100 1.04396 0.92239 0.93034 1.23533 0.91135 0.93282 0.99218 1.22259 0.97552 0.97531 1.06060 1.22569 0.92504 0.95360 1.00585 1.20089 0.90655 1.01458 0.98466 1.23032 0.93832 1.00249 1.02889 1.23045 1.02895 0.94720 0.99437 1.73793 1.03443 1.09803 1.19020 1.84817 1.34007 1.22328 1.54958 1.22357 1.01443 0.97914 0.78725 1.22621 1.01199 0.93395 0.94880 0.89621 1.20637 0.94158 0.95972 0.85490 1.42397 1.25646 1.64439 1.05322 1.19241 1.03029 1.28317 0.86579 0.91115 1.24752 0.97313 1.00714 0.98167 1.69668 1.18151 1.39972 1.30185 0.86130 0.78532 0.77221 0.84372 1.20558 1.21877 1.21858 0.92840 0.91398 0.92293 0.91321 0.91139 0.85597 0.86396 0.81263 0.86024 0.88141 0.87800 0.87884 0.88237 0.89871 0.90992 0.95689 0.95841 0.78283 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.44 7.91 37.16 0.29 -1.15 16 2 C -0.10 -0.98 3.47 -88.79 -0.31 -1.29 16 3 H 0.09 0.79 8.14 -51.93 -0.42 0.36 16 4 C 0.10 0.87 6.07 -3.06 -0.02 0.85 16 5 N -0.61 -7.68 3.33 -170.52 -0.57 -8.25 16 6 C 0.53 7.05 7.84 -10.98 -0.09 6.96 16 7 O -0.53 -9.79 16.29 5.56 0.09 -9.70 16 8 C -0.06 -0.49 5.46 -29.04 -0.16 -0.65 16 9 C -0.01 -0.09 5.98 -35.30 -0.21 -0.30 16 10 C -0.21 -2.35 10.40 -39.38 -0.41 -2.76 16 11 C 0.05 0.59 6.95 -82.10 -0.57 0.02 16 12 C -0.09 -0.83 6.33 -91.77 -0.58 -1.41 16 13 C -0.16 -1.22 10.04 -26.73 -0.27 -1.48 16 14 C -0.16 -1.43 10.23 -26.73 -0.27 -1.70 16 15 N -0.36 -5.09 12.07 33.42 0.40 -4.69 16 16 O 0.11 1.45 11.20 17.18 0.19 1.64 16 17 C 0.12 1.83 6.00 -2.53 -0.02 1.82 16 18 C -0.10 -1.48 2.91 -88.48 -0.26 -1.73 16 19 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 20 C 0.17 3.07 4.54 -4.04 -0.02 3.05 16 21 N -0.73 -18.08 5.55 -59.90 -0.33 -18.41 16 22 C -0.24 -6.65 9.99 -15.06 -0.15 -6.80 16 23 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 24 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.28 13.06 55.49 0.72 -27.56 16 26 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.07 0.73 7.12 -51.93 -0.37 0.36 16 32 H 0.06 0.66 7.35 -51.93 -0.38 0.28 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.47 7.84 -51.93 -0.41 0.06 16 35 H 0.13 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.12 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.17 1.47 7.62 -52.49 -0.40 1.07 16 38 H 0.12 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.10 0.76 7.34 -51.93 -0.38 0.38 16 40 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 41 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.10 1.04 8.14 -51.93 -0.42 0.61 16 43 H 0.08 1.56 8.04 -51.93 -0.42 1.14 16 44 H 0.07 1.19 7.49 -51.93 -0.39 0.80 16 45 H 0.03 0.47 6.94 -51.93 -0.36 0.11 16 46 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 47 H 0.38 10.06 7.67 -40.82 -0.31 9.75 16 48 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 395.01 15.07 5.95 5.95 Total: -1.00 -35.32 395.01 -9.30 -44.62 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -7.61 Total: 6.06 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -3.13 Total: -7.07 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.23 Total: -58.90 kcal Atomic # 8 Polarization: -8.34 SS G_CDS: 0.28 Total: -8.05 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.32 -9.30 -44.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569839305.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.444 kcal (2) G-P(sol) polarization free energy of solvation -35.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.618 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds