Wall clock time and date at job start Tue Mar 31 2020 17:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34776 * 127.83552 * 219.56414 * 5 4 2 7 7 O 1.21286 * 120.00097 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.00199 * 0.02623 * 6 5 4 9 9 C 1.50692 * 109.47372 * 179.97438 * 8 6 5 10 10 C 1.35451 * 126.77760 * 89.71042 * 9 8 6 11 11 C 1.41378 * 103.98632 * 179.91174 * 10 9 8 12 12 C 1.50701 * 126.79926 * 180.09760 * 11 10 9 13 13 C 1.53004 * 117.50150 * 343.90983 * 12 11 10 14 14 C 1.53002 * 60.00060 * 252.51394 * 13 12 11 15 15 N 1.30175 * 106.39694 * 0.35940 * 11 10 9 16 16 O 1.20920 * 111.60102 * 359.77027 * 15 11 10 17 17 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 18 18 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 19 19 H 1.09002 * 110.34142 * 237.84781 * 18 2 1 20 20 C 1.53003 * 110.34211 * 359.97438 * 18 2 1 21 21 N 1.46505 * 109.47422 * 185.00055 * 20 18 2 22 22 C 1.36931 * 120.00405 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99680 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00347 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99780 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00291 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46949 * 59.99586 * 26 24 22 28 28 H 1.48491 * 109.47148 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47036 * 299.99906 * 26 24 22 30 30 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 31 31 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 32 32 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 33 33 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 34 34 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 35 35 H 1.08993 * 109.47329 * 300.00568 * 8 6 5 36 36 H 1.09006 * 109.46605 * 59.99917 * 8 6 5 37 37 H 1.08006 * 128.00479 * 0.02562 * 10 9 8 38 38 H 1.09004 * 115.55158 * 129.62432 * 12 11 10 39 39 H 1.08998 * 117.49570 * 0.02562 * 13 12 11 40 40 H 1.09004 * 117.50027 * 145.02269 * 13 12 11 41 41 H 1.09005 * 117.49485 * 252.51135 * 14 13 12 42 42 H 1.08993 * 117.49815 * 107.49078 * 14 13 12 43 43 H 1.08998 * 110.41105 * 201.63246 * 17 5 4 44 44 H 1.09004 * 110.40870 * 79.19127 * 17 5 4 45 45 H 1.08994 * 109.47367 * 305.00343 * 20 18 2 46 46 H 1.09001 * 109.46773 * 65.00890 * 20 18 2 47 47 H 0.97005 * 119.99632 * 0.02562 * 21 20 18 48 48 H 0.97002 * 120.00175 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4459 -1.6630 -1.3514 7 8 5.3405 -2.2702 -0.8018 8 6 4.6502 -1.1138 -2.7399 9 6 6.0397 -1.4526 -3.2147 10 6 6.4180 -2.5658 -3.8872 11 6 7.8059 -2.3879 -4.0893 12 6 8.7439 -3.3333 -4.7945 13 6 8.2620 -4.7674 -5.0229 14 6 9.3392 -4.4800 -3.9750 15 7 8.1140 -1.2484 -3.5405 16 8 7.1464 -0.7145 -3.0498 17 6 2.8824 -1.9401 0.6333 18 6 2.0663 -0.7703 1.2244 19 1 2.7080 -0.1264 1.8258 20 6 0.9061 -1.3010 2.0690 21 7 1.4328 -1.9243 3.2857 22 6 0.5745 -2.4739 4.2002 23 1 -0.4908 -2.4475 4.0247 24 6 1.0736 -3.0640 5.3533 25 7 2.3718 -3.0957 5.5674 26 14 -0.0974 -3.8131 6.6011 27 1 -0.8829 -4.8953 5.9553 28 1 0.6803 -4.3752 7.7344 29 1 -1.0205 -2.7647 7.1053 30 1 -0.3633 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8837 32 1 -0.3634 -1.0276 -0.0126 33 1 1.3271 -1.4869 -1.5790 34 1 2.3421 -0.0790 -2.0198 35 1 3.9174 -1.5538 -3.4162 36 1 4.5259 -0.0310 -2.7242 37 1 5.8016 -3.3962 -4.1988 38 1 9.3730 -2.8848 -5.5636 39 1 7.2663 -5.0269 -4.6634 40 1 8.5738 -5.2627 -5.9425 41 1 10.3597 -4.7863 -4.2053 42 1 9.0523 -4.5507 -2.9259 43 1 3.7692 -2.1288 1.2384 44 1 2.2675 -2.8377 0.5681 45 1 0.2467 -0.4764 2.3394 46 1 0.3472 -2.0401 1.4950 47 1 2.3897 -1.9476 3.4435 48 1 2.7206 -3.5083 6.3730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001569839307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:39 Heat of formation + Delta-G solvation = 68.274053 kcal Electronic energy + Delta-G solvation = -28145.967110 eV Core-core repulsion = 24205.618534 eV Total energy + Delta-G solvation = -3940.348576 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.07988 -40.19158 -38.17926 -37.85123 -34.69358 -33.90110 -33.15608 -32.89808 -31.19103 -29.65338 -28.32835 -26.47608 -25.12922 -24.86841 -23.43122 -23.00549 -22.29344 -22.09108 -20.38086 -19.30723 -18.91200 -17.96383 -17.38639 -17.14878 -16.75283 -16.16170 -16.03172 -15.48910 -15.23607 -14.81054 -14.62417 -14.24395 -14.15892 -13.70611 -13.67705 -13.26509 -13.03959 -12.51552 -12.45253 -12.31316 -12.17392 -11.96493 -11.93647 -11.89331 -11.77664 -11.72437 -11.32905 -10.99079 -10.84966 -10.73249 -10.53961 -10.47914 -10.23054 -10.10523 -9.96610 -9.93231 -9.68483 -9.47754 -8.86640 -8.74045 -6.92416 -5.75741 -3.05239 1.24208 1.98674 2.50034 2.71183 3.06622 3.34089 3.43973 3.48206 3.49867 3.82704 4.16225 4.30133 4.47349 4.53545 4.57516 4.59753 4.67230 4.76613 4.81662 4.90515 4.92304 4.98101 5.21707 5.25647 5.30122 5.35223 5.42941 5.43494 5.50466 5.56169 5.59065 5.69672 5.74373 5.76816 5.77720 5.82197 5.90384 6.05881 6.10202 6.13178 6.29318 6.38678 6.47763 6.72335 6.82423 7.50318 7.68847 8.05280 8.11048 8.42547 9.53489 10.11146 10.44929 11.46827 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.002280 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.213415 B =12280.058044 C =13614.544781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.099 4.099 3 H 0.079 0.921 4 C 0.102 3.898 5 N -0.622 5.622 6 C 0.533 3.467 7 O -0.529 6.529 8 C -0.057 4.057 9 C -0.007 4.007 10 C -0.213 4.213 11 C 0.048 3.952 12 C -0.088 4.088 13 C -0.163 4.163 14 C -0.163 4.163 15 N -0.358 5.358 16 O 0.107 5.893 17 C 0.117 3.883 18 C -0.106 4.106 19 H 0.081 0.919 20 C 0.162 3.838 21 N -0.734 5.734 22 C -0.242 4.242 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.067 0.933 31 H 0.050 0.950 32 H 0.064 0.936 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.126 0.874 36 H 0.119 0.881 37 H 0.170 0.830 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.085 0.915 44 H 0.078 0.922 45 H 0.027 0.973 46 H 0.023 0.977 47 H 0.383 0.617 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.229 4.111 -25.707 26.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.118 4.118 3 H 0.097 0.903 4 C -0.021 4.021 5 N -0.356 5.356 6 C 0.320 3.680 7 O -0.405 6.405 8 C -0.098 4.098 9 C -0.071 4.071 10 C -0.235 4.235 11 C -0.111 4.111 12 C -0.106 4.106 13 C -0.200 4.200 14 C -0.201 4.201 15 N -0.060 5.060 16 O 0.040 5.960 17 C -0.005 4.005 18 C -0.125 4.125 19 H 0.100 0.900 20 C 0.035 3.965 21 N -0.379 5.379 22 C -0.373 4.373 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.086 0.914 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.144 0.856 36 H 0.137 0.863 37 H 0.187 0.813 38 H 0.140 0.860 39 H 0.118 0.882 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.103 0.897 44 H 0.097 0.903 45 H 0.045 0.955 46 H 0.040 0.960 47 H 0.217 0.783 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.836 4.399 -25.242 26.278 hybrid contribution -0.950 -0.963 0.690 1.519 sum 4.885 3.437 -24.551 25.267 Atomic orbital electron populations 1.21900 0.93836 1.02755 1.01874 1.22059 0.96601 0.99222 0.93955 0.90259 1.22599 0.86910 0.95586 0.97043 1.49006 1.12399 1.55705 1.18490 1.19762 0.81006 0.80419 0.86823 1.90796 1.41027 1.41430 1.67242 1.20093 0.89439 1.04785 0.95476 1.23525 0.90626 0.92935 1.00034 1.22248 0.94902 1.00322 1.05987 1.22567 0.93377 0.94201 1.00923 1.20090 1.00631 0.87915 1.02000 1.23029 1.00044 0.95801 1.01148 1.23045 0.98801 1.00312 0.97942 1.73795 1.08735 1.10881 1.12565 1.84824 1.11947 1.41526 1.57742 1.22470 0.99691 0.97092 0.81239 1.22344 0.98169 0.96311 0.95718 0.90045 1.20848 0.92866 0.95105 0.87700 1.42419 1.06755 1.69044 1.19657 1.19145 0.89827 1.29709 0.98626 0.91245 1.24755 0.95829 1.01737 0.98600 1.69650 1.10588 1.49816 1.27951 0.86276 0.79796 0.79036 0.81106 1.21284 1.21703 1.21280 0.91375 0.93071 0.91687 0.90500 0.90484 0.85586 0.86337 0.81288 0.86008 0.88177 0.87807 0.87873 0.88247 0.89687 0.90344 0.95519 0.95962 0.78297 0.93403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 7.93 37.16 0.29 -1.12 16 2 C -0.10 -1.03 3.65 -89.22 -0.33 -1.36 16 3 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 4 C 0.10 0.90 6.46 -2.41 -0.02 0.88 16 5 N -0.62 -7.80 3.32 -169.31 -0.56 -8.36 16 6 C 0.53 7.10 7.91 -10.98 -0.09 7.02 16 7 O -0.53 -9.75 16.30 5.55 0.09 -9.66 16 8 C -0.06 -0.49 5.25 -29.04 -0.15 -0.64 16 9 C -0.01 -0.08 5.98 -35.31 -0.21 -0.29 16 10 C -0.21 -2.31 10.40 -39.38 -0.41 -2.72 16 11 C 0.05 0.57 6.95 -82.10 -0.57 0.00 16 12 C -0.09 -0.81 6.33 -91.77 -0.58 -1.39 16 13 C -0.16 -1.16 10.04 -26.73 -0.27 -1.43 16 14 C -0.16 -1.39 10.23 -26.73 -0.27 -1.66 16 15 N -0.36 -5.06 12.07 33.42 0.40 -4.66 16 16 O 0.11 1.46 11.20 17.18 0.19 1.65 16 17 C 0.12 1.83 6.41 -2.41 -0.02 1.82 16 18 C -0.11 -1.58 3.09 -89.22 -0.28 -1.85 16 19 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 20 C 0.16 3.00 4.40 -4.04 -0.02 2.98 16 21 N -0.73 -18.09 5.48 -59.91 -0.33 -18.41 16 22 C -0.24 -6.66 9.99 -15.06 -0.15 -6.81 16 23 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 24 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 25 N -0.93 -28.36 13.06 55.49 0.72 -27.64 16 26 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 27 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 28 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 29 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 30 H 0.07 0.74 6.77 -51.93 -0.35 0.39 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.68 6.84 -51.93 -0.36 0.32 16 33 H 0.08 0.61 7.85 -51.93 -0.41 0.20 16 34 H 0.08 0.44 7.30 -51.93 -0.38 0.06 16 35 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.12 0.72 7.95 -51.93 -0.41 0.30 16 37 H 0.17 1.40 7.62 -52.48 -0.40 1.00 16 38 H 0.12 0.98 8.14 -51.93 -0.42 0.55 16 39 H 0.10 0.72 7.34 -51.93 -0.38 0.34 16 40 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 42 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.08 1.58 7.88 -51.93 -0.41 1.17 16 44 H 0.08 1.30 7.76 -51.93 -0.40 0.89 16 45 H 0.03 0.50 6.53 -51.93 -0.34 0.16 16 46 H 0.02 0.41 6.91 -51.93 -0.36 0.05 16 47 H 0.38 10.11 7.61 -40.82 -0.31 9.80 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 392.47 15.07 5.91 5.91 Total: -1.00 -35.29 392.47 -9.18 -44.47 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: -7.44 Total: 6.43 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: -3.16 Total: -7.06 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: 0.24 Total: -59.07 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.28 Total: -8.01 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.29 -9.18 -44.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569839307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.745 kcal (2) G-P(sol) polarization free energy of solvation -35.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds