Wall clock time and date at job start Tue Mar 31 2020 17:45:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 110.30551 * 2 1 4 4 C 1.54395 * 110.43060 * 237.76283 * 2 1 3 5 5 N 1.48145 * 104.61454 * 217.21687 * 4 2 1 6 6 C 1.34776 * 127.83552 * 219.56414 * 5 4 2 7 7 O 1.21286 * 120.00097 * 180.02562 * 6 5 4 8 8 C 1.50705 * 120.00199 * 0.02623 * 6 5 4 9 9 C 1.50692 * 109.47372 * 179.97438 * 8 6 5 10 10 C 1.35451 * 126.77760 * 89.71042 * 9 8 6 11 11 C 1.41378 * 103.98632 * 179.91174 * 10 9 8 12 12 C 1.50701 * 126.79926 * 180.09760 * 11 10 9 13 13 C 1.53004 * 117.50150 * 343.90983 * 12 11 10 14 14 C 1.53002 * 60.00060 * 252.51394 * 13 12 11 15 15 N 1.30175 * 106.39694 * 0.35940 * 11 10 9 16 16 O 1.20920 * 111.60102 * 359.77027 * 15 11 10 17 17 C 1.48140 * 104.32775 * 39.58831 * 5 4 2 18 18 C 1.54281 * 110.34397 * 122.17674 * 2 1 3 19 19 H 1.09002 * 110.34142 * 237.84781 * 18 2 1 20 20 C 1.53003 * 110.34211 * 359.97438 * 18 2 1 21 21 N 1.46505 * 109.47422 * 185.00055 * 20 18 2 22 22 C 1.36931 * 120.00405 * 180.02562 * 21 20 18 23 23 H 1.07998 * 119.99680 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00347 * 180.02562 * 22 21 20 25 25 N 1.31617 * 119.99780 * 359.97438 * 24 22 21 26 26 Si 1.86797 * 120.00291 * 179.97438 * 24 22 21 27 27 H 1.48500 * 109.46949 * 59.99586 * 26 24 22 28 28 H 1.48491 * 109.47148 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.47036 * 299.99906 * 26 24 22 30 30 H 1.08999 * 109.47069 * 299.29750 * 1 2 3 31 31 H 1.09004 * 109.47187 * 59.29880 * 1 2 3 32 32 H 1.09004 * 109.47207 * 179.30026 * 1 2 3 33 33 H 1.08990 * 110.40604 * 336.00312 * 4 2 1 34 34 H 1.09000 * 110.40401 * 98.43734 * 4 2 1 35 35 H 1.08993 * 109.47329 * 300.00568 * 8 6 5 36 36 H 1.09006 * 109.46605 * 59.99917 * 8 6 5 37 37 H 1.08006 * 128.00479 * 0.02562 * 10 9 8 38 38 H 1.09004 * 115.55158 * 129.62432 * 12 11 10 39 39 H 1.08998 * 117.49570 * 0.02562 * 13 12 11 40 40 H 1.09004 * 117.50027 * 145.02269 * 13 12 11 41 41 H 1.09005 * 117.49485 * 252.51135 * 14 13 12 42 42 H 1.08993 * 117.49815 * 107.49078 * 14 13 12 43 43 H 1.08998 * 110.41105 * 201.63246 * 17 5 4 44 44 H 1.09004 * 110.40870 * 79.19127 * 17 5 4 45 45 H 1.08994 * 109.47367 * 305.00343 * 20 18 2 46 46 H 1.09001 * 109.46773 * 65.00890 * 20 18 2 47 47 H 0.97005 * 119.99632 * 0.02562 * 21 20 18 48 48 H 0.97002 * 120.00175 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7718 -1.2238 5 7 3.2692 -1.4794 -0.7205 6 6 4.4459 -1.6630 -1.3514 7 8 5.3405 -2.2702 -0.8018 8 6 4.6502 -1.1138 -2.7399 9 6 6.0397 -1.4526 -3.2147 10 6 6.4180 -2.5658 -3.8872 11 6 7.8059 -2.3879 -4.0893 12 6 8.7439 -3.3333 -4.7945 13 6 8.2620 -4.7674 -5.0229 14 6 9.3392 -4.4800 -3.9750 15 7 8.1140 -1.2484 -3.5405 16 8 7.1464 -0.7145 -3.0498 17 6 2.8824 -1.9401 0.6333 18 6 2.0663 -0.7703 1.2244 19 1 2.7080 -0.1264 1.8258 20 6 0.9061 -1.3010 2.0690 21 7 1.4328 -1.9243 3.2857 22 6 0.5745 -2.4739 4.2002 23 1 -0.4908 -2.4475 4.0247 24 6 1.0736 -3.0640 5.3533 25 7 2.3718 -3.0957 5.5674 26 14 -0.0974 -3.8131 6.6011 27 1 -0.8829 -4.8953 5.9553 28 1 0.6803 -4.3752 7.7344 29 1 -1.0205 -2.7647 7.1053 30 1 -0.3633 0.5029 0.8962 31 1 -0.3634 0.5247 -0.8837 32 1 -0.3634 -1.0276 -0.0126 33 1 1.3271 -1.4869 -1.5790 34 1 2.3421 -0.0790 -2.0198 35 1 3.9174 -1.5538 -3.4162 36 1 4.5259 -0.0310 -2.7242 37 1 5.8016 -3.3962 -4.1988 38 1 9.3730 -2.8848 -5.5636 39 1 7.2663 -5.0269 -4.6634 40 1 8.5738 -5.2627 -5.9425 41 1 10.3597 -4.7863 -4.2053 42 1 9.0523 -4.5507 -2.9259 43 1 3.7692 -2.1288 1.2384 44 1 2.2675 -2.8377 0.5681 45 1 0.2467 -0.4764 2.3394 46 1 0.3472 -2.0401 1.4950 47 1 2.3897 -1.9476 3.4435 48 1 2.7206 -3.5083 6.3730 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001569839307.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:38 Heat of formation + Delta-G solvation = 45.233264 kcal Electronic energy + Delta-G solvation = -28146.966234 eV Core-core repulsion = 24205.618534 eV Total energy + Delta-G solvation = -3941.347699 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -45.97357 -41.25038 -39.31943 -38.52715 -36.40381 -34.77877 -34.33460 -33.90489 -32.81940 -30.89447 -29.46937 -27.37325 -26.67658 -25.66863 -24.85353 -23.86217 -23.48776 -22.98558 -21.25215 -20.23715 -20.14210 -19.05142 -18.78637 -18.22436 -17.97096 -17.15656 -16.92063 -16.61150 -16.33194 -16.20041 -15.52427 -15.38109 -15.29818 -15.01720 -14.78189 -14.66913 -14.16848 -13.76588 -13.48578 -13.32470 -13.10476 -13.01367 -12.98774 -12.82181 -12.74161 -12.71404 -12.56239 -12.44904 -12.21447 -12.07543 -11.81648 -11.66691 -11.47874 -11.39879 -11.23951 -11.17427 -10.86222 -10.72284 -10.38741 -9.81445 -8.97820 -7.94218 -5.23285 0.36588 1.14152 1.46576 1.50062 1.51317 1.56235 1.83594 2.19056 2.56499 2.67222 3.10455 3.35898 3.39793 3.46636 3.63290 3.77620 3.81586 3.87159 3.94945 4.03699 4.07214 4.19424 4.24449 4.28983 4.34249 4.47111 4.51099 4.58754 4.63139 4.65313 4.71035 4.74181 4.82916 4.89322 4.89872 4.95195 5.01501 5.04524 5.06496 5.17180 5.21853 5.25974 5.30536 5.47700 5.51547 5.62721 6.27577 6.53341 7.04077 7.23251 7.33106 8.11128 8.31697 9.29480 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014670 B = 0.002280 C = 0.002056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1908.213415 B =12280.058044 C =13614.544781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.090 4.090 3 H 0.096 0.904 4 C 0.102 3.898 5 N -0.618 5.618 6 C 0.527 3.473 7 O -0.594 6.594 8 C -0.043 4.043 9 C -0.015 4.015 10 C -0.218 4.218 11 C 0.039 3.961 12 C -0.104 4.104 13 C -0.141 4.141 14 C -0.174 4.174 15 N -0.394 5.394 16 O 0.084 5.916 17 C 0.121 3.879 18 C -0.100 4.100 19 H 0.060 0.940 20 C 0.163 3.837 21 N -0.751 5.751 22 C -0.241 4.241 23 H 0.081 0.919 24 C -0.081 4.081 25 N -0.974 5.974 26 Si 0.975 3.025 27 H -0.276 1.276 28 H -0.300 1.300 29 H -0.275 1.275 30 H 0.052 0.948 31 H 0.085 0.915 32 H 0.056 0.944 33 H 0.095 0.905 34 H 0.126 0.874 35 H 0.173 0.827 36 H 0.153 0.847 37 H 0.194 0.806 38 H 0.133 0.867 39 H 0.100 0.900 40 H 0.130 0.870 41 H 0.121 0.879 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.067 0.933 45 H 0.035 0.965 46 H 0.031 0.969 47 H 0.369 0.631 48 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.775 4.727 -28.993 29.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.110 4.110 3 H 0.114 0.886 4 C -0.019 4.019 5 N -0.350 5.350 6 C 0.317 3.683 7 O -0.475 6.475 8 C -0.083 4.083 9 C -0.079 4.079 10 C -0.239 4.239 11 C -0.119 4.119 12 C -0.123 4.123 13 C -0.178 4.178 14 C -0.212 4.212 15 N -0.100 5.100 16 O 0.020 5.980 17 C -0.003 4.003 18 C -0.119 4.119 19 H 0.079 0.921 20 C 0.038 3.962 21 N -0.393 5.393 22 C -0.373 4.373 23 H 0.099 0.901 24 C -0.273 4.273 25 N -0.625 5.625 26 Si 0.803 3.197 27 H -0.202 1.202 28 H -0.226 1.226 29 H -0.201 1.201 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.075 0.925 33 H 0.113 0.887 34 H 0.144 0.856 35 H 0.190 0.810 36 H 0.171 0.829 37 H 0.212 0.788 38 H 0.150 0.850 39 H 0.119 0.881 40 H 0.148 0.852 41 H 0.139 0.861 42 H 0.093 0.907 43 H 0.059 0.941 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.049 0.951 47 H 0.200 0.800 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.291 5.069 -28.580 29.212 hybrid contribution -0.210 -1.145 1.680 2.044 sum 3.080 3.924 -26.900 27.359 Atomic orbital electron populations 1.21872 0.92800 1.02557 1.02862 1.22086 0.97344 0.99550 0.91995 0.88568 1.22931 0.85464 0.96384 0.97158 1.49055 1.13572 1.55403 1.17007 1.20697 0.80032 0.79326 0.88285 1.90777 1.43153 1.44410 1.69121 1.20285 0.88659 1.06917 0.92440 1.24126 0.91211 0.92949 0.99647 1.22653 0.94666 1.00812 1.05745 1.23150 0.94626 0.93940 1.00149 1.20278 1.01174 0.88400 1.02450 1.23155 0.99498 0.93785 1.01345 1.23079 1.00430 1.00590 0.97055 1.73778 1.09629 1.12384 1.14208 1.84764 1.12611 1.42348 1.58285 1.22138 0.97702 0.97298 0.83137 1.22200 0.96587 0.96068 0.97087 0.92133 1.21038 0.94219 0.94979 0.86010 1.42720 1.05914 1.69372 1.21312 1.19630 0.90684 1.28184 0.98782 0.90134 1.25626 0.97334 1.03322 1.01034 1.69836 1.12626 1.51672 1.28383 0.85192 0.77739 0.78448 0.78290 1.20199 1.22613 1.20105 0.92857 0.89600 0.92508 0.88710 0.85599 0.80950 0.82897 0.78843 0.84967 0.88127 0.85157 0.86099 0.90668 0.94142 0.91516 0.94717 0.95089 0.79990 0.94189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 7.93 71.98 0.57 -1.69 16 2 C -0.09 -1.60 3.65 -9.89 -0.04 -1.64 16 3 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 4 C 0.10 1.33 6.46 86.54 0.56 1.89 16 5 N -0.62 -14.51 3.32 -807.96 -2.68 -17.19 16 6 C 0.53 13.44 7.91 87.66 0.69 14.13 16 7 O -0.59 -22.78 16.30 -3.05 -0.05 -22.83 16 8 C -0.04 -0.58 5.25 29.10 0.15 -0.43 16 9 C -0.02 -0.33 5.98 25.04 0.15 -0.18 16 10 C -0.22 -4.45 10.40 22.40 0.23 -4.22 16 11 C 0.04 0.94 6.95 43.58 0.30 1.25 16 12 C -0.10 -1.85 6.33 -11.54 -0.07 -1.93 16 13 C -0.14 -1.75 10.04 30.60 0.31 -1.44 16 14 C -0.17 -2.90 10.23 30.60 0.31 -2.58 16 15 N -0.39 -11.46 12.07 -49.57 -0.60 -12.06 16 16 O 0.08 2.32 11.20 71.64 0.80 3.13 16 17 C 0.12 3.92 6.41 86.54 0.55 4.47 16 18 C -0.10 -2.97 3.09 -9.89 -0.03 -3.00 16 19 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 20 C 0.16 6.02 4.40 86.38 0.38 6.40 16 21 N -0.75 -38.06 5.48 -343.45 -1.88 -39.94 16 22 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 23 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 24 C -0.08 -4.75 5.50 84.86 0.47 -4.28 16 25 N -0.97 -61.55 13.06 21.65 0.28 -61.26 16 26 Si 0.97 46.56 29.55 68.60 2.03 48.59 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 29 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 30 H 0.05 1.01 6.77 -2.39 -0.02 1.00 16 31 H 0.09 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 1.00 6.84 -2.38 -0.02 0.98 16 33 H 0.09 1.00 7.85 -2.39 -0.02 0.98 16 34 H 0.13 0.54 7.30 -2.39 -0.02 0.52 16 35 H 0.17 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.15 1.07 7.95 -2.38 -0.02 1.05 16 37 H 0.19 2.75 7.62 -2.91 -0.02 2.73 16 38 H 0.13 2.01 8.14 -2.39 -0.02 1.99 16 39 H 0.10 1.25 7.34 -2.39 -0.02 1.23 16 40 H 0.13 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.12 1.52 8.14 -2.38 -0.02 1.50 16 42 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.04 1.65 7.88 -2.39 -0.02 1.63 16 44 H 0.07 2.29 7.76 -2.39 -0.02 2.27 16 45 H 0.04 1.25 6.53 -2.39 -0.02 1.24 16 46 H 0.03 1.11 6.91 -2.39 -0.02 1.10 16 47 H 0.37 20.56 7.61 -92.70 -0.71 19.85 16 48 H 0.25 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -84.17 392.47 3.56 -80.61 By element: Atomic # 1 Polarization: 26.51 SS G_CDS: 0.27 Total: 26.78 kcal Atomic # 6 Polarization: -11.20 SS G_CDS: 5.38 Total: -5.82 kcal Atomic # 7 Polarization: -125.58 SS G_CDS: -4.88 Total: -130.46 kcal Atomic # 8 Polarization: -20.46 SS G_CDS: 0.75 Total: -19.71 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -84.17 3.56 -80.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001569839307.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.844 kcal (2) G-P(sol) polarization free energy of solvation -84.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds