Wall clock time and date at job start Tue Mar 31 2020 18:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21275 * 119.99948 * 2 1 4 4 N 1.34778 * 119.99960 * 180.02562 * 2 1 3 5 5 C 1.46500 * 120.00342 * 174.82714 * 4 2 1 6 6 C 1.46506 * 119.99998 * 354.83184 * 4 2 1 7 7 C 1.50700 * 109.47083 * 89.99780 * 6 4 2 8 8 O 1.21283 * 120.00085 * 0.02562 * 7 6 4 9 9 N 1.34777 * 119.99741 * 179.97438 * 7 6 4 10 10 C 1.46498 * 119.99666 * 179.97438 * 9 7 6 11 11 C 1.50703 * 109.47130 * 179.72845 * 10 9 7 12 12 C 1.38237 * 120.00262 * 269.73106 * 11 10 9 13 13 C 1.38233 * 120.00303 * 179.74095 * 12 11 10 14 14 C 1.38236 * 119.99869 * 0.55246 * 13 12 11 15 15 C 1.50696 * 120.00073 * 179.72155 * 14 13 12 16 16 H 1.09002 * 109.46872 * 199.97277 * 15 14 13 17 17 C 1.53006 * 109.46871 * 79.98206 * 15 14 13 18 18 N 1.46498 * 109.47160 * 319.98119 * 15 14 13 19 19 C 1.36942 * 119.99617 * 205.00077 * 18 15 14 20 20 H 1.07999 * 120.00153 * 359.97438 * 19 18 15 21 21 C 1.38810 * 119.99541 * 179.97438 * 19 18 15 22 22 N 1.31615 * 120.00306 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99623 * 179.97438 * 21 19 18 24 24 H 1.48491 * 109.47382 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46927 * 119.99996 * 23 21 19 26 26 H 1.48501 * 109.47174 * 239.99709 * 23 21 19 27 27 C 1.38241 * 119.99503 * 359.70031 * 14 13 12 28 28 C 1.38232 * 119.99868 * 90.00024 * 11 10 9 29 29 H 1.09001 * 109.47171 * 274.81868 * 1 2 3 30 30 H 1.08996 * 109.47470 * 34.82037 * 1 2 3 31 31 H 1.09011 * 109.47166 * 154.81971 * 1 2 3 32 32 H 1.09001 * 109.47233 * 275.05908 * 5 4 2 33 33 H 1.09008 * 109.46640 * 35.05897 * 5 4 2 34 34 H 1.08994 * 109.47600 * 155.05445 * 5 4 2 35 35 H 1.09001 * 109.46876 * 329.99855 * 6 4 2 36 36 H 1.08997 * 109.46749 * 209.99609 * 6 4 2 37 37 H 0.96998 * 120.00118 * 359.73053 * 9 7 6 38 38 H 1.08995 * 109.47724 * 299.73183 * 10 9 7 39 39 H 1.09009 * 109.47152 * 59.73317 * 10 9 7 40 40 H 1.08002 * 119.99549 * 359.97438 * 12 11 10 41 41 H 1.07998 * 120.00208 * 180.27686 * 13 12 11 42 42 H 1.09007 * 109.46970 * 299.99562 * 17 15 14 43 43 H 1.08997 * 109.47236 * 59.99626 * 17 15 14 44 44 H 1.08997 * 109.46984 * 180.02562 * 17 15 14 45 45 H 0.97001 * 120.00036 * 24.99733 * 18 15 14 46 46 H 0.96999 * 119.99859 * 180.02562 * 22 21 19 47 47 H 1.08004 * 119.99367 * 179.97438 * 27 14 13 48 48 H 1.07998 * 120.00074 * 0.02562 * 28 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6413 -1.1698 -0.1149 6 6 1.4528 -2.4335 0.1132 7 6 1.0922 -2.9310 -1.2629 8 8 1.4124 -2.2911 -2.2422 9 7 0.4150 -4.0875 -1.4053 10 6 0.0640 -4.5708 -2.7430 11 6 -0.6784 -5.8770 -2.6264 12 6 0.0179 -7.0712 -2.6357 13 6 -0.6626 -8.2691 -2.5234 14 6 -2.0406 -8.2735 -2.4132 15 6 -2.7830 -9.5797 -2.2970 16 1 -3.8269 -9.4300 -2.5726 17 6 -2.7038 -10.0848 -0.8549 18 7 -2.1776 -10.5670 -3.1942 19 6 -2.9233 -11.6170 -3.6598 20 1 -3.9575 -11.7175 -3.3653 21 6 -2.3498 -12.5521 -4.5104 22 7 -1.0896 -12.4294 -4.8697 23 14 -3.3668 -13.9849 -5.1450 24 1 -4.7439 -13.8957 -4.5967 25 1 -3.4198 -13.9356 -6.6282 26 1 -2.7447 -15.2626 -4.7141 27 6 -2.7374 -7.0796 -2.4090 28 6 -2.0563 -5.8814 -2.5156 29 1 -0.3633 0.0863 1.0240 30 1 -0.3634 0.8436 -0.5868 31 1 -0.3634 -0.9301 -0.4373 32 1 3.9235 -1.1257 -1.1668 33 1 4.0482 -0.3037 0.4072 34 1 4.0391 -2.0819 0.3299 35 1 0.5431 -2.2787 0.6935 36 1 2.0815 -3.1704 0.6128 37 1 0.1630 -4.6015 -0.6223 38 1 -0.5692 -3.8361 -3.2403 39 1 0.9732 -4.7204 -3.3254 40 1 1.0941 -7.0679 -2.7271 41 1 -0.1182 -9.2018 -2.5262 42 1 -1.6599 -10.2345 -0.5792 43 1 -3.1542 -9.3503 -0.1874 44 1 -3.2404 -11.0298 -0.7710 45 1 -1.2487 -10.4769 -3.4585 46 1 -0.6891 -13.0827 -5.4644 47 1 -3.8140 -7.0830 -2.3233 48 1 -2.6008 -4.9487 -2.5131 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001570030728.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:56 Heat of formation + Delta-G solvation = -56.819748 kcal Electronic energy + Delta-G solvation = -27480.036315 eV Core-core repulsion = 23534.263265 eV Total energy + Delta-G solvation = -3945.773050 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.50 seconds Orbital eigenvalues (eV) -41.40158 -40.62825 -39.94225 -37.45384 -36.49020 -35.68943 -34.11139 -32.04290 -31.75411 -31.42205 -30.22906 -29.28138 -27.13048 -26.40988 -25.71016 -23.77685 -22.97875 -21.91925 -21.09456 -20.34119 -19.38472 -18.57306 -18.15137 -17.55837 -17.18866 -16.75171 -16.55471 -16.40272 -16.17426 -15.82364 -15.68572 -15.07370 -14.99213 -14.64635 -14.45756 -14.35517 -14.24414 -14.03708 -13.81803 -13.75461 -13.55134 -13.43078 -13.16426 -12.99173 -12.96796 -12.79833 -12.71820 -12.66512 -12.45785 -12.09132 -11.98922 -11.58619 -11.50968 -11.30864 -11.03255 -11.00611 -10.10458 -9.85275 -9.75274 -9.46557 -9.01467 -7.94280 -5.22241 0.34359 0.56969 1.45686 1.47789 1.47913 1.57835 1.60418 1.91603 2.38144 2.56384 2.96480 3.40687 3.60181 3.70431 3.86253 3.90843 4.01326 4.07047 4.08349 4.20072 4.27137 4.38285 4.39283 4.46653 4.55254 4.57333 4.63466 4.64402 4.74920 4.80049 4.83863 4.89392 4.99808 5.03969 5.10407 5.15693 5.25756 5.34983 5.39259 5.45527 5.51518 5.59707 5.67014 5.87806 6.13686 6.20896 6.28581 6.58797 7.05392 7.25991 7.34642 8.10237 8.33296 9.29462 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.031061 B = 0.001783 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.241037 B =15702.543816 C =15990.393196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.508 3.492 3 O -0.596 6.596 4 N -0.602 5.602 5 C 0.083 3.917 6 C 0.090 3.910 7 C 0.488 3.512 8 O -0.580 6.580 9 N -0.708 5.708 10 C 0.173 3.827 11 C -0.113 4.113 12 C -0.098 4.098 13 C -0.124 4.124 14 C -0.074 4.074 15 C 0.197 3.803 16 H 0.053 0.947 17 C -0.148 4.148 18 N -0.735 5.735 19 C -0.236 4.236 20 H 0.078 0.922 21 C -0.078 4.078 22 N -0.970 5.970 23 Si 0.970 3.030 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.295 1.295 27 C -0.122 4.122 28 C -0.091 4.091 29 H 0.125 0.875 30 H 0.088 0.912 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.065 0.935 34 H 0.104 0.896 35 H 0.149 0.851 36 H 0.149 0.851 37 H 0.418 0.582 38 H 0.075 0.925 39 H 0.064 0.936 40 H 0.131 0.869 41 H 0.101 0.899 42 H 0.041 0.959 43 H 0.072 0.928 44 H 0.040 0.960 45 H 0.374 0.626 46 H 0.250 0.750 47 H 0.137 0.863 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.520 20.651 15.535 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.477 6.477 4 N -0.334 5.334 5 C -0.059 4.059 6 C -0.036 4.036 7 C 0.274 3.726 8 O -0.459 6.459 9 N -0.361 5.361 10 C 0.050 3.950 11 C -0.114 4.114 12 C -0.117 4.117 13 C -0.143 4.143 14 C -0.075 4.075 15 C 0.089 3.911 16 H 0.071 0.929 17 C -0.208 4.208 18 N -0.377 5.377 19 C -0.368 4.368 20 H 0.096 0.904 21 C -0.270 4.270 22 N -0.621 5.621 23 Si 0.800 3.200 24 H -0.189 1.189 25 H -0.224 1.224 26 H -0.222 1.222 27 C -0.140 4.140 28 C -0.109 4.109 29 H 0.143 0.857 30 H 0.107 0.893 31 H 0.108 0.892 32 H 0.056 0.944 33 H 0.083 0.917 34 H 0.123 0.877 35 H 0.167 0.833 36 H 0.167 0.833 37 H 0.256 0.744 38 H 0.094 0.906 39 H 0.082 0.918 40 H 0.148 0.852 41 H 0.119 0.881 42 H 0.060 0.940 43 H 0.091 0.909 44 H 0.059 0.941 45 H 0.207 0.793 46 H 0.058 0.942 47 H 0.155 0.845 48 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 1.908 21.542 14.817 26.216 hybrid contribution 0.150 -1.632 -0.828 1.836 sum 2.058 19.910 13.989 24.420 Atomic orbital electron populations 1.21969 0.88865 1.05382 1.06560 1.21516 0.92221 0.82587 0.73772 1.90683 1.72089 1.32814 1.52150 1.47602 1.07892 1.05839 1.72043 1.21723 0.78947 1.04068 1.01189 1.21900 1.01914 0.86700 0.93046 1.21856 0.77203 0.80596 0.92922 1.90764 1.54870 1.57945 1.42313 1.45992 1.57207 1.23375 1.09535 1.19976 0.98493 0.91669 0.84895 1.19727 0.94045 0.93738 1.03869 1.21115 1.00239 0.91457 0.98873 1.20961 0.94352 0.98147 1.00842 1.20315 0.94216 0.95424 0.97587 1.19444 0.95181 0.85913 0.90528 0.92875 1.22247 1.00918 1.00633 0.96957 1.42747 1.12124 1.27199 1.55600 1.19676 0.94845 1.01268 1.20971 0.90430 1.25529 0.97391 1.02338 1.01714 1.69817 1.13268 1.38470 1.40556 0.85109 0.78422 0.79162 0.77302 1.18873 1.22380 1.22241 1.21196 1.00668 0.91351 1.00772 1.21216 0.93359 0.98270 0.98069 0.85719 0.89335 0.89154 0.94425 0.91659 0.87721 0.83321 0.83316 0.74435 0.90629 0.91810 0.85153 0.88059 0.94013 0.90900 0.94080 0.79261 0.94155 0.84536 0.83302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.77 9.35 71.23 0.67 -1.10 16 2 C 0.51 9.80 7.77 87.65 0.68 10.48 16 3 O -0.60 -17.32 16.73 -3.02 -0.05 -17.37 16 4 N -0.60 -8.71 2.36 -851.13 -2.01 -10.72 16 5 C 0.08 1.20 10.46 127.77 1.34 2.54 16 6 C 0.09 0.54 5.51 85.63 0.47 1.01 16 7 C 0.49 6.61 7.16 87.66 0.63 7.24 16 8 O -0.58 -14.27 16.43 -3.04 -0.05 -14.32 16 9 N -0.71 -7.54 5.55 -466.78 -2.59 -10.13 16 10 C 0.17 2.80 5.80 85.63 0.50 3.29 16 11 C -0.11 -2.15 5.25 -19.87 -0.10 -2.26 16 12 C -0.10 -2.34 9.70 22.27 0.22 -2.12 16 13 C -0.12 -3.85 9.06 22.27 0.20 -3.64 16 14 C -0.07 -2.31 4.95 -19.87 -0.10 -2.41 16 15 C 0.20 7.36 3.09 44.25 0.14 7.49 16 16 H 0.05 1.99 7.94 -2.39 -0.02 1.97 16 17 C -0.15 -4.86 9.47 71.98 0.68 -4.18 16 18 N -0.74 -35.93 5.07 -326.50 -1.66 -37.59 16 19 C -0.24 -12.76 9.93 84.03 0.83 -11.93 16 20 H 0.08 4.01 7.83 -2.91 -0.02 3.99 16 21 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 22 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 23 Si 0.97 45.55 29.55 68.60 2.03 47.58 16 24 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 25 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 26 H -0.30 -13.89 7.11 99.48 0.71 -13.19 16 27 C -0.12 -2.90 9.67 22.27 0.22 -2.69 16 28 C -0.09 -1.70 9.70 22.27 0.22 -1.48 16 29 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 31 H 0.09 0.70 6.01 -2.38 -0.01 0.68 16 32 H 0.04 0.70 8.14 -2.39 -0.02 0.69 16 33 H 0.06 1.09 7.51 -2.38 -0.02 1.07 16 34 H 0.10 0.75 7.84 -2.39 -0.02 0.73 16 35 H 0.15 -0.14 6.70 -2.39 -0.02 -0.15 16 36 H 0.15 -0.07 7.86 -2.39 -0.02 -0.09 16 37 H 0.42 2.18 8.46 -92.71 -0.78 1.40 16 38 H 0.08 1.26 8.09 -2.39 -0.02 1.24 16 39 H 0.06 1.22 8.08 -2.38 -0.02 1.20 16 40 H 0.13 2.72 8.06 -2.91 -0.02 2.70 16 41 H 0.10 3.63 6.92 -2.91 -0.02 3.61 16 42 H 0.04 1.40 8.14 -2.38 -0.02 1.38 16 43 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 44 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 45 H 0.37 19.66 6.07 -92.71 -0.56 19.10 16 46 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 47 H 0.14 2.79 8.04 -2.91 -0.02 2.77 16 48 H 0.15 1.90 8.06 -2.91 -0.02 1.88 16 Total: -1.00 -81.72 403.08 2.63 -79.09 By element: Atomic # 1 Polarization: 26.00 SS G_CDS: -0.37 Total: 25.63 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 7.05 Total: -3.68 kcal Atomic # 7 Polarization: -110.95 SS G_CDS: -5.97 Total: -116.92 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -0.10 Total: -31.70 kcal Atomic # 14 Polarization: 45.55 SS G_CDS: 2.03 Total: 47.58 kcal Total: -81.72 2.63 -79.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001570030728.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.270 kcal (2) G-P(sol) polarization free energy of solvation -81.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.50 seconds