Wall clock time and date at job start Tue Mar 31 2020 17:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.86963 * 2 1 4 4 C 1.54319 * 109.88703 * 121.02068 * 2 1 3 5 5 H 1.09006 * 110.71721 * 23.06905 * 4 2 1 6 6 N 1.46498 * 110.71850 * 259.97420 * 4 2 1 7 7 C 1.36943 * 119.99727 * 157.44028 * 6 4 2 8 8 H 1.07998 * 120.00392 * 359.97438 * 7 6 4 9 9 C 1.38811 * 119.99586 * 179.97438 * 7 6 4 10 10 N 1.31618 * 120.00460 * 0.02562 * 9 7 6 11 11 Si 1.86798 * 119.99694 * 179.97438 * 9 7 6 12 12 H 1.48506 * 109.47297 * 179.97438 * 11 9 7 13 13 H 1.48503 * 109.47261 * 60.00129 * 11 9 7 14 14 H 1.48500 * 109.47454 * 300.00122 * 11 9 7 15 15 C 1.55151 * 103.10409 * 141.51915 * 4 2 1 16 16 C 1.55124 * 101.48586 * 324.72049 * 15 4 2 17 17 N 1.47029 * 109.87913 * 238.83274 * 2 1 3 18 18 C 1.34773 * 125.65353 * 61.60263 * 17 2 1 19 19 O 1.21280 * 119.99946 * 0.02562 * 18 17 2 20 20 C 1.50692 * 120.00033 * 180.02562 * 18 17 2 21 21 C 1.53001 * 109.47211 * 179.97438 * 20 18 17 22 22 C 1.52997 * 109.47438 * 179.97438 * 21 20 18 23 23 N 1.46500 * 109.47197 * 180.02562 * 22 21 20 24 24 C 1.35768 * 119.62331 * 269.72631 * 23 22 21 25 25 C 1.35343 * 120.70222 * 179.76208 * 24 23 22 26 26 C 1.40193 * 119.95143 * 0.51208 * 25 24 23 27 27 C 1.36400 * 119.26339 * 359.74194 * 26 25 24 28 28 C 1.34660 * 119.62958 * 89.99925 * 23 22 21 29 29 O 1.22062 * 119.97939 * 359.97438 * 28 23 22 30 30 H 1.08996 * 109.46781 * 298.97906 * 1 2 3 31 31 H 1.08995 * 109.47239 * 58.97666 * 1 2 3 32 32 H 1.09001 * 109.46919 * 178.98000 * 1 2 3 33 33 H 0.96998 * 120.00095 * 337.43487 * 6 4 2 34 34 H 0.97001 * 119.99952 * 359.97438 * 10 9 7 35 35 H 1.09006 * 111.00487 * 82.66416 * 15 4 2 36 36 H 1.09005 * 111.00867 * 206.51378 * 15 4 2 37 37 H 1.09003 * 110.20644 * 277.95185 * 16 15 4 38 38 H 1.09006 * 110.51051 * 155.75478 * 16 15 4 39 39 H 1.08999 * 109.47355 * 299.99590 * 20 18 17 40 40 H 1.09001 * 109.47841 * 59.99972 * 20 18 17 41 41 H 1.09003 * 109.47381 * 300.00277 * 21 20 18 42 42 H 1.09007 * 109.46953 * 59.99687 * 21 20 18 43 43 H 1.08999 * 109.47347 * 299.99802 * 22 21 20 44 44 H 1.08999 * 109.46934 * 59.99770 * 22 21 20 45 45 H 1.08011 * 119.64950 * 359.97438 * 24 23 22 46 46 H 1.08007 * 120.02464 * 180.23263 * 25 24 23 47 47 H 1.07997 * 120.36795 * 179.77245 * 26 25 24 48 48 H 1.08000 * 120.34929 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0550 -0.7479 1.2436 5 1 1.3041 -1.4415 1.6219 6 7 2.4556 0.1991 2.2871 7 6 2.5065 -0.2042 3.5948 8 1 2.2510 -1.2202 3.8569 9 6 2.8867 0.6930 4.5835 10 7 3.1976 1.9314 4.2642 11 14 2.9555 0.1430 6.3673 12 1 3.3872 1.2800 7.2196 13 1 3.9250 -0.9735 6.5041 14 1 1.6096 -0.3148 6.7965 15 6 3.2870 -1.5168 0.6977 16 6 2.8145 -1.8803 -0.7344 17 7 2.0300 -0.7156 -1.1831 18 6 1.8073 -0.3653 -2.4653 19 8 1.1435 0.6175 -2.7189 20 6 2.3832 -1.1948 -3.5839 21 6 1.9841 -0.5845 -4.9290 22 6 2.5692 -1.4263 -6.0647 23 7 2.1876 -0.8416 -7.3526 24 6 1.0392 -1.2407 -7.9569 25 6 0.6633 -0.7116 -9.1445 26 6 1.4688 0.2516 -9.7680 27 6 2.6247 0.6478 -9.1618 28 6 2.9825 0.0817 -7.9263 29 8 4.0142 0.4270 -7.3728 30 1 -0.3633 0.4979 0.8990 31 1 -0.3633 0.5296 -0.8806 32 1 -0.3633 -1.0275 -0.0183 33 1 2.6849 1.1118 2.0518 34 1 3.1616 2.2171 3.3379 35 1 4.1665 -0.8735 0.6661 36 1 3.4812 -2.4128 1.2873 37 1 2.1887 -2.7724 -0.7093 38 1 3.6706 -2.0368 -1.3909 39 1 3.4698 -1.2126 -3.5008 40 1 1.9970 -2.2120 -3.5180 41 1 0.8974 -0.5669 -5.0119 42 1 2.3700 0.4328 -4.9952 43 1 3.6559 -1.4434 -5.9816 44 1 2.1838 -2.4437 -5.9986 45 1 0.4173 -1.9861 -7.4832 46 1 -0.2544 -1.0344 -9.6137 47 1 1.1771 0.6757 -10.7174 48 1 3.2583 1.3889 -9.6263 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571459399.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:24:31 Heat of formation + Delta-G solvation = -50.860203 kcal Electronic energy + Delta-G solvation = -28082.082482 eV Core-core repulsion = 24136.567857 eV Total energy + Delta-G solvation = -3945.514625 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.31103 -41.32507 -39.03613 -37.97261 -36.50967 -36.25028 -34.03293 -33.22283 -32.29855 -30.84419 -30.65588 -28.36134 -26.69461 -25.23230 -24.86638 -24.42888 -23.48502 -22.55125 -21.66964 -20.10628 -19.38426 -18.59998 -18.27722 -17.95725 -17.47525 -17.18445 -16.86965 -16.62859 -16.46282 -15.96361 -15.62299 -15.36425 -15.23474 -15.04370 -14.81058 -14.51544 -14.12654 -13.96493 -13.68276 -13.56280 -13.29821 -13.14386 -13.00187 -12.90105 -12.75118 -12.73807 -12.66273 -12.57266 -12.38056 -12.16126 -11.88350 -11.86728 -11.71081 -11.29821 -11.11136 -10.99941 -10.94386 -10.82502 -9.72963 -9.15945 -8.95762 -8.40010 -5.35855 -0.06202 0.93486 1.58236 1.58939 1.63514 1.69344 1.84980 1.94903 2.69690 2.72161 3.32943 3.42274 3.62168 3.65126 3.68221 3.76480 3.88455 3.93731 3.98566 4.06568 4.14890 4.23027 4.28575 4.30221 4.31766 4.41104 4.42263 4.48926 4.55871 4.57802 4.58889 4.72088 4.84581 4.94190 4.98130 5.06854 5.12614 5.15357 5.15664 5.22865 5.27244 5.37743 5.41440 5.60176 5.69084 6.11721 6.45257 6.53957 7.00126 7.03635 7.11335 7.92677 8.07179 9.10988 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.030817 B = 0.001887 C = 0.001877 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 908.357978 B =14834.779680 C =14916.441733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.130 3.870 3 H 0.035 0.965 4 C 0.174 3.826 5 H 0.071 0.929 6 N -0.743 5.743 7 C -0.325 4.325 8 H 0.076 0.924 9 C -0.108 4.108 10 N -0.978 5.978 11 Si 1.129 2.871 12 H -0.299 1.299 13 H -0.274 1.274 14 H -0.276 1.276 15 C -0.150 4.150 16 C 0.106 3.894 17 N -0.611 5.611 18 C 0.517 3.483 19 O -0.591 6.591 20 C -0.120 4.120 21 C -0.108 4.108 22 C 0.092 3.908 23 N -0.494 5.494 24 C 0.134 3.866 25 C -0.236 4.236 26 C 0.006 3.994 27 C -0.291 4.291 28 C 0.489 3.511 29 O -0.616 6.616 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.355 0.645 34 H 0.241 0.759 35 H 0.049 0.951 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.104 0.896 39 H 0.110 0.890 40 H 0.143 0.857 41 H 0.077 0.923 42 H 0.030 0.970 43 H 0.086 0.914 44 H 0.146 0.854 45 H 0.207 0.793 46 H 0.182 0.818 47 H 0.164 0.836 48 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.459 -17.137 -28.709 34.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.025 3.975 3 H 0.053 0.947 4 C 0.065 3.935 5 H 0.089 0.911 6 N -0.384 5.384 7 C -0.456 4.456 8 H 0.094 0.906 9 C -0.299 4.299 10 N -0.626 5.626 11 Si 0.954 3.046 12 H -0.225 1.225 13 H -0.200 1.200 14 H -0.202 1.202 15 C -0.191 4.191 16 C -0.015 4.015 17 N -0.345 5.345 18 C 0.309 3.691 19 O -0.472 6.472 20 C -0.159 4.159 21 C -0.147 4.147 22 C -0.029 4.029 23 N -0.203 5.203 24 C 0.008 3.992 25 C -0.258 4.258 26 C -0.016 4.016 27 C -0.312 4.312 28 C 0.295 3.705 29 O -0.504 6.504 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.187 0.813 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.108 0.892 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.128 0.872 40 H 0.161 0.839 41 H 0.096 0.904 42 H 0.049 0.951 43 H 0.104 0.896 44 H 0.164 0.836 45 H 0.224 0.776 46 H 0.199 0.801 47 H 0.181 0.819 48 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -6.896 -16.175 -26.915 32.150 hybrid contribution 0.136 1.026 -1.330 1.686 sum -6.759 -15.148 -28.245 32.756 Atomic orbital electron populations 1.21904 0.94081 1.02597 1.01355 1.21597 0.95032 0.95073 0.85814 0.94717 1.21397 0.95126 0.90838 0.86144 0.91094 1.42577 1.81859 1.10204 1.03755 1.20373 1.41789 0.98053 0.85410 0.90566 1.27267 0.99885 0.94168 1.08592 1.71003 1.54231 1.18487 1.18855 0.82612 0.77115 0.74618 0.70261 1.22498 1.19967 1.20185 1.23412 0.98583 1.01158 0.95904 1.22597 0.96103 0.87990 0.94843 1.48676 1.52264 1.29102 1.04411 1.21161 0.79788 0.85197 0.83001 1.90680 1.42604 1.30032 1.83865 1.21570 1.03426 1.01113 0.89837 1.21514 1.01740 0.98559 0.92915 1.22168 1.02653 0.98782 0.79301 1.45619 1.20180 1.34258 1.20226 1.22848 0.85694 0.96995 0.93695 1.21211 1.04637 1.02765 0.97221 1.21874 0.90165 0.90872 0.98719 1.22118 1.03245 1.08614 0.97249 1.17650 0.84171 0.80828 0.87900 1.90927 1.27670 1.64326 1.67475 0.92905 0.92926 0.90747 0.81282 0.94882 0.93239 0.89166 0.88011 0.87781 0.87200 0.83922 0.90441 0.95098 0.89594 0.83626 0.77599 0.80072 0.81868 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.73 9.09 71.98 0.65 -4.07 16 2 C 0.13 4.65 3.21 45.34 0.15 4.79 16 3 H 0.03 1.50 7.70 -2.39 -0.02 1.48 16 4 C 0.17 6.59 3.12 46.18 0.14 6.74 16 5 H 0.07 2.63 7.81 -2.38 -0.02 2.61 16 6 N -0.74 -37.04 5.24 -317.34 -1.66 -38.70 16 7 C -0.33 -17.73 9.97 84.03 0.84 -16.89 16 8 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 9 C -0.11 -6.26 5.50 84.86 0.47 -5.79 16 10 N -0.98 -62.12 13.70 21.65 0.30 -61.82 16 11 Si 1.13 51.27 29.92 68.60 2.05 53.32 16 12 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 13 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 14 H -0.28 -11.55 7.11 99.48 0.71 -10.84 16 15 C -0.15 -4.55 6.79 32.06 0.22 -4.33 16 16 C 0.11 2.20 6.70 86.93 0.58 2.78 16 17 N -0.61 -17.17 3.07 -787.62 -2.42 -19.58 16 18 C 0.52 14.48 7.64 87.66 0.67 15.15 16 19 O -0.59 -22.21 15.03 -3.03 -0.05 -22.26 16 20 C -0.12 -1.90 4.70 29.85 0.14 -1.76 16 21 C -0.11 -1.98 4.83 30.59 0.15 -1.83 16 22 C 0.09 1.15 5.33 86.38 0.46 1.61 16 23 N -0.49 -7.76 2.58 -650.97 -1.68 -9.44 16 24 C 0.13 0.93 10.28 83.42 0.86 1.79 16 25 C -0.24 -1.40 10.01 22.08 0.22 -1.18 16 26 C 0.01 0.06 10.10 22.32 0.23 0.28 16 27 C -0.29 -5.55 9.99 22.40 0.22 -5.33 16 28 C 0.49 12.16 7.41 84.82 0.63 12.79 16 29 O -0.62 -21.56 16.64 -5.52 -0.09 -21.65 16 30 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.05 1.85 6.90 -2.39 -0.02 1.83 16 32 H 0.07 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.36 19.33 6.37 -92.71 -0.59 18.74 16 34 H 0.24 15.45 6.77 -92.71 -0.63 14.83 16 35 H 0.05 1.74 8.14 -2.38 -0.02 1.72 16 36 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 37 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.10 1.54 7.47 -2.38 -0.02 1.52 16 39 H 0.11 1.53 7.85 -2.39 -0.02 1.52 16 40 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.37 8.10 -2.39 -0.02 1.35 16 42 H 0.03 0.87 8.10 -2.38 -0.02 0.85 16 43 H 0.09 1.42 7.39 -2.39 -0.02 1.40 16 44 H 0.15 0.29 8.01 -2.39 -0.02 0.27 16 45 H 0.21 -0.49 8.03 -2.91 -0.02 -0.51 16 46 H 0.18 -0.22 8.06 -2.91 -0.02 -0.24 16 47 H 0.16 0.59 8.06 -2.91 -0.02 0.57 16 48 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -90.51 393.52 3.58 -86.93 By element: Atomic # 1 Polarization: 27.94 SS G_CDS: 0.50 Total: 28.45 kcal Atomic # 6 Polarization: -1.87 SS G_CDS: 6.62 Total: 4.75 kcal Atomic # 7 Polarization: -124.08 SS G_CDS: -5.46 Total: -129.54 kcal Atomic # 8 Polarization: -43.77 SS G_CDS: -0.14 Total: -43.91 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.05 Total: 53.32 kcal Total: -90.51 3.58 -86.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571459399.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.071 kcal (2) G-P(sol) polarization free energy of solvation -90.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds