Wall clock time and date at job start Tue Mar 31 2020 17:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.45692 * 2 1 4 4 C 1.53039 * 109.46283 * 240.02050 * 2 1 3 5 5 H 1.08996 * 109.50170 * 60.86716 * 4 2 1 6 6 N 1.46501 * 109.50011 * 300.74649 * 4 2 1 7 7 C 1.34781 * 119.99344 * 155.19719 * 6 4 2 8 8 O 1.21610 * 120.00186 * 359.97438 * 7 6 4 9 9 C 1.43196 * 119.99958 * 180.02562 * 7 6 4 10 10 C 5.84160 * 80.02625 * 205.14694 * 2 1 3 11 11 C 7.19474 * 77.82914 * 200.43136 * 2 1 3 12 12 C 1.53000 * 117.49361 * 251.94251 * 11 10 9 13 13 C 1.52992 * 117.49670 * 183.28707 * 11 10 9 14 14 C 1.53119 * 109.27792 * 180.80981 * 4 2 1 15 15 C 1.53122 * 109.16253 * 57.65189 * 14 4 2 16 16 C 1.53039 * 109.27983 * 302.34524 * 15 14 4 17 17 N 1.46849 * 109.51920 * 59.17992 * 16 15 14 18 18 C 1.46904 * 110.99832 * 174.15862 * 17 16 15 19 19 C 1.50695 * 109.46798 * 66.04622 * 18 17 16 20 20 O 1.21288 * 120.00231 * 0.27184 * 19 18 17 21 21 N 1.34784 * 119.99635 * 180.02562 * 19 18 17 22 22 C 1.37099 * 119.99504 * 179.97438 * 21 19 18 23 23 H 1.07999 * 120.00446 * 0.02562 * 22 21 19 24 24 C 1.38955 * 119.99366 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99828 * 180.02562 * 24 22 21 26 26 Si 1.86794 * 120.00407 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.47025 * 89.99899 * 26 24 22 28 28 H 1.48505 * 109.47433 * 210.00429 * 26 24 22 29 29 H 1.48505 * 109.47266 * 330.00336 * 26 24 22 30 30 H 1.09002 * 109.46751 * 300.03310 * 1 2 3 31 31 H 1.09000 * 109.46771 * 60.02694 * 1 2 3 32 32 H 1.08998 * 109.47441 * 180.02562 * 1 2 3 33 33 H 0.96992 * 120.00403 * 335.19931 * 6 4 2 34 34 H 1.09001 * 115.55240 * 37.60701 * 11 10 9 35 35 H 1.08992 * 117.50525 * 0.02562 * 12 11 10 36 36 H 1.09007 * 117.49424 * 145.02688 * 12 11 10 37 37 H 1.09003 * 117.49547 * 214.98053 * 13 11 10 38 38 H 1.09002 * 117.50525 * 359.96717 * 13 11 10 39 39 H 1.09008 * 109.51998 * 297.74912 * 14 4 2 40 40 H 1.08995 * 109.57757 * 177.59433 * 14 4 2 41 41 H 1.08997 * 109.50070 * 182.40650 * 15 14 4 42 42 H 1.09003 * 109.53161 * 62.31072 * 15 14 4 43 43 H 1.08994 * 109.46237 * 299.16513 * 16 15 14 44 44 H 1.08999 * 109.45738 * 179.19274 * 16 15 14 45 45 H 1.09005 * 109.47078 * 306.04503 * 18 17 16 46 46 H 1.09002 * 109.47005 * 186.04719 * 18 17 16 47 47 H 0.96999 * 120.00044 * 0.02562 * 21 19 18 48 48 H 0.97000 * 120.00381 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7210 -1.2499 5 1 1.6896 -0.1984 -2.1399 6 7 1.5372 -2.0970 -1.2600 7 6 1.4125 -2.7603 -2.4267 8 8 1.7168 -2.2163 -3.4709 9 6 0.9206 -4.1051 -2.4367 10 6 0.5183 -5.2080 -2.4448 11 6 0.0132 -6.5906 -2.4551 12 6 0.1628 -7.4069 -1.1697 13 6 1.0432 -7.7195 -2.3823 14 6 3.5710 -0.7363 -1.2354 15 6 4.0548 -1.4189 0.0470 16 6 3.4865 -0.6776 1.2593 17 7 2.0193 -0.6917 1.1995 18 6 1.4372 -0.1104 2.4166 19 6 1.7792 1.3556 2.4862 20 8 2.4383 1.8671 1.6059 21 7 1.3484 2.0995 3.5243 22 6 1.6600 3.4331 3.5879 23 1 2.2503 3.8877 2.8060 24 6 1.2163 4.1999 4.6584 25 7 1.5145 5.4783 4.7191 26 14 0.1947 3.4139 6.0104 27 1 1.0939 2.8981 7.0738 28 1 -0.7252 4.4266 6.5880 29 1 -0.5967 2.2921 5.4442 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 -0.3634 -1.0276 0.0005 33 1 1.2941 -2.5307 -0.4272 34 1 -0.8785 -6.7609 -3.0585 35 1 0.6349 -6.9201 -0.3164 36 1 -0.6301 -8.1146 -0.9278 37 1 0.8291 -8.6327 -2.9376 38 1 2.0949 -7.4385 -2.3272 39 1 3.9457 0.2869 -1.2671 40 1 3.9389 -1.2859 -2.1018 41 1 5.1438 -1.3948 0.0834 42 1 3.7130 -2.4539 0.0601 43 1 3.8403 0.3533 1.2533 44 1 3.8174 -1.1698 2.1738 45 1 1.8412 -0.6197 3.2916 46 1 0.3540 -0.2302 2.3944 47 1 0.8186 1.6912 4.2268 48 1 1.2051 6.0136 5.4666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571519355.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:15:20 Heat of formation + Delta-G solvation = -4.244199 kcal Electronic energy + Delta-G solvation = -28849.639970 eV Core-core repulsion = 24906.146766 eV Total energy + Delta-G solvation = -3943.493203 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.75999 -40.58219 -39.00341 -38.44650 -36.20438 -35.38419 -34.24326 -33.77730 -33.75231 -32.10078 -29.13280 -27.94495 -26.34971 -25.82528 -23.96848 -23.25932 -22.95990 -22.60807 -21.28605 -20.65357 -19.96761 -19.82502 -17.78747 -17.59128 -17.27909 -16.83823 -16.61174 -16.43005 -16.27906 -15.93492 -15.63489 -15.47624 -15.15955 -15.05608 -14.66250 -14.54778 -14.06206 -13.80499 -13.49286 -13.36876 -13.10001 -13.07947 -12.99175 -12.94213 -12.59976 -12.41826 -12.38687 -12.30213 -12.22118 -12.01854 -11.81915 -11.62246 -11.50008 -11.40985 -11.18594 -11.07521 -11.00256 -10.68340 -10.21449 -10.12635 -9.04376 -8.42266 -6.02315 0.46500 1.15168 1.29708 1.34602 1.43833 1.92657 2.01819 2.22199 2.40495 2.87405 2.97787 3.03689 3.15132 3.20496 3.64404 3.80057 3.86663 3.97692 4.05450 4.07719 4.11725 4.23912 4.33137 4.45394 4.48703 4.56040 4.61585 4.66244 4.71057 4.77616 4.80717 4.88581 4.96664 5.00662 5.03830 5.09336 5.12510 5.16870 5.25204 5.27246 5.31301 5.48187 5.52811 5.90599 6.01148 6.06161 6.16690 6.46893 6.57393 6.88685 7.07887 7.39527 7.95948 8.75209 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017871 B = 0.002500 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1566.396489 B =11196.223828 C =11885.207469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.056 3.944 3 H 0.068 0.932 4 C 0.167 3.833 5 H 0.075 0.925 6 N -0.677 5.677 7 C 0.632 3.368 8 O -0.575 6.575 9 C -0.262 4.262 10 C -0.027 4.027 11 C -0.089 4.089 12 C -0.148 4.148 13 C -0.155 4.155 14 C -0.130 4.130 15 C -0.100 4.100 16 C 0.041 3.959 17 N -0.491 5.491 18 C 0.043 3.957 19 C 0.419 3.581 20 O -0.610 6.610 21 N -0.589 5.589 22 C -0.324 4.324 23 H 0.054 0.946 24 C -0.018 4.018 25 N -0.935 5.935 26 Si 0.964 3.036 27 H -0.258 1.258 28 H -0.279 1.279 29 H -0.228 1.228 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.078 0.922 33 H 0.420 0.580 34 H 0.155 0.845 35 H 0.097 0.903 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.092 0.908 39 H 0.059 0.941 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.029 0.971 44 H 0.086 0.914 45 H 0.124 0.876 46 H 0.123 0.877 47 H 0.389 0.611 48 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.131 -29.460 -5.857 30.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.053 4.053 3 H 0.085 0.915 4 C 0.062 3.938 5 H 0.093 0.907 6 N -0.327 5.327 7 C 0.420 3.580 8 O -0.456 6.456 9 C -0.265 4.265 10 C -0.029 4.029 11 C -0.106 4.106 12 C -0.184 4.184 13 C -0.192 4.192 14 C -0.169 4.169 15 C -0.138 4.138 16 C -0.087 4.087 17 N -0.214 5.214 18 C -0.089 4.089 19 C 0.207 3.793 20 O -0.496 6.496 21 N -0.230 5.230 22 C -0.454 4.454 23 H 0.072 0.928 24 C -0.216 4.216 25 N -0.576 5.576 26 Si 0.784 3.216 27 H -0.182 1.182 28 H -0.204 1.204 29 H -0.152 1.152 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.097 0.903 33 H 0.258 0.742 34 H 0.173 0.827 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.110 0.890 39 H 0.078 0.922 40 H 0.082 0.918 41 H 0.093 0.907 42 H 0.096 0.904 43 H 0.048 0.952 44 H 0.105 0.895 45 H 0.142 0.858 46 H 0.141 0.859 47 H 0.224 0.776 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.621 -29.000 -7.076 30.207 hybrid contribution -0.022 1.793 1.005 2.056 sum -4.643 -27.208 -6.071 28.261 Atomic orbital electron populations 1.21832 0.93332 1.02850 1.01768 1.22130 0.96258 0.97739 0.89193 0.91473 1.20907 0.93841 0.81502 0.97587 0.90654 1.45671 1.64151 1.14364 1.08526 1.14869 0.77045 0.82160 0.83924 1.90819 1.52338 1.69043 1.33433 1.20531 1.05839 0.94161 1.05944 1.22097 0.92108 0.92786 0.95957 1.19286 1.03180 0.81694 1.06454 1.23255 1.03266 1.00997 0.90907 1.23238 0.96271 0.97847 1.01813 1.21916 0.94881 1.01158 0.98935 1.21449 1.00294 0.99640 0.92391 1.22269 0.87388 0.99615 0.99431 1.62509 1.07678 1.50602 1.00615 1.22370 1.03421 0.87478 0.95603 1.22308 0.83158 0.91272 0.82543 1.90460 1.44044 1.75030 1.40061 1.42249 1.49289 1.08529 1.22905 1.18979 1.32916 0.84964 1.08516 0.92807 1.26150 0.98986 0.95741 1.00749 1.69813 1.46907 1.07814 1.33058 0.85377 0.78725 0.79377 0.78122 1.18218 1.20394 1.15154 0.92751 0.92656 0.90274 0.74216 0.82735 0.88433 0.85093 0.85201 0.88993 0.92208 0.91797 0.90659 0.90388 0.95239 0.89534 0.85807 0.85893 0.77558 0.91268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.65 8.59 71.98 0.62 -3.03 16 2 C 0.06 1.65 1.66 44.94 0.07 1.72 16 3 H 0.07 2.66 5.35 -2.39 -0.01 2.65 16 4 C 0.17 4.64 2.26 45.04 0.10 4.74 16 5 H 0.08 2.36 7.58 -2.39 -0.02 2.34 16 6 N -0.68 -16.12 3.70 -449.87 -1.66 -17.79 16 7 C 0.63 17.76 7.62 85.49 0.65 18.41 16 8 O -0.57 -20.69 16.75 -4.06 -0.07 -20.76 16 9 C -0.26 -6.30 13.61 30.01 0.41 -5.89 16 10 C -0.03 -0.51 13.47 31.12 0.42 -0.09 16 11 C -0.09 -0.92 6.21 -12.60 -0.08 -1.00 16 12 C -0.15 -0.95 10.21 30.62 0.31 -0.63 16 13 C -0.15 -1.11 10.21 30.61 0.31 -0.79 16 14 C -0.13 -3.59 5.67 30.67 0.17 -3.42 16 15 C -0.10 -2.38 5.92 30.65 0.18 -2.20 16 16 C 0.04 1.13 5.09 86.33 0.44 1.57 16 17 N -0.49 -12.85 4.17 -875.62 -3.65 -16.50 16 18 C 0.04 1.16 5.30 85.55 0.45 1.61 16 19 C 0.42 17.21 7.04 87.65 0.62 17.83 16 20 O -0.61 -30.47 11.20 -3.05 -0.03 -30.50 16 21 N -0.59 -26.16 5.09 -306.98 -1.56 -27.73 16 22 C -0.32 -18.39 10.16 84.04 0.85 -17.53 16 23 H 0.05 3.67 7.39 -2.91 -0.02 3.65 16 24 C -0.02 -0.96 5.50 84.93 0.47 -0.50 16 25 N -0.94 -55.86 13.96 21.66 0.30 -55.56 16 26 Si 0.96 37.83 27.73 68.60 1.90 39.73 16 27 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 28 H -0.28 -11.02 7.11 99.48 0.71 -10.31 16 29 H -0.23 -7.40 6.52 99.48 0.65 -6.76 16 30 H 0.05 1.48 6.24 -2.39 -0.01 1.46 16 31 H 0.05 1.47 8.14 -2.39 -0.02 1.45 16 32 H 0.08 1.68 7.39 -2.39 -0.02 1.66 16 33 H 0.42 8.41 7.87 -92.71 -0.73 7.68 16 34 H 0.16 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.10 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.13 0.27 8.14 -2.38 -0.02 0.25 16 37 H 0.13 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 40 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.08 1.65 7.73 -2.39 -0.02 1.63 16 43 H 0.03 1.09 6.01 -2.39 -0.01 1.07 16 44 H 0.09 2.07 8.06 -2.39 -0.02 2.05 16 45 H 0.12 2.65 8.06 -2.38 -0.02 2.63 16 46 H 0.12 2.75 6.32 -2.39 -0.02 2.74 16 47 H 0.39 14.27 5.76 -92.71 -0.53 13.74 16 48 H 0.28 15.22 8.31 -92.71 -0.77 14.45 16 Total: -1.00 -77.60 387.25 0.91 -76.69 By element: Atomic # 1 Polarization: 41.93 SS G_CDS: -0.32 Total: 41.61 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: 6.01 Total: 10.80 kcal Atomic # 7 Polarization: -111.00 SS G_CDS: -6.58 Total: -117.57 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -0.10 Total: -51.26 kcal Atomic # 14 Polarization: 37.83 SS G_CDS: 1.90 Total: 39.73 kcal Total: -77.60 0.91 -76.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571519355.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.446 kcal (2) G-P(sol) polarization free energy of solvation -77.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.690 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds