Wall clock time and date at job start Tue Mar 31 2020 17:18:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09000 * 109.69678 * 2 1 4 4 C 1.52758 * 109.51217 * 239.88255 * 2 1 3 5 5 H 1.09001 * 109.59073 * 65.65360 * 4 2 1 6 6 N 1.46502 * 109.36099 * 305.61650 * 4 2 1 7 7 C 1.34771 * 120.00153 * 155.15949 * 6 4 2 8 8 O 1.21287 * 120.00092 * 359.97438 * 7 6 4 9 9 C 1.50702 * 120.00140 * 179.97438 * 7 6 4 10 10 O 1.42897 * 109.47292 * 179.97438 * 9 7 6 11 11 C 1.42896 * 114.00092 * 180.02562 * 10 9 7 12 12 C 1.50700 * 109.47469 * 180.02562 * 11 10 9 13 13 C 1.38652 * 120.78424 * 269.72122 * 12 11 10 14 14 C 1.38206 * 119.15787 * 179.75524 * 13 12 11 15 15 N 1.31871 * 120.76248 * 0.52392 * 14 13 12 16 16 C 1.31867 * 121.73007 * 359.74600 * 15 14 13 17 17 C 1.38200 * 120.76001 * 359.97438 * 16 15 14 18 18 C 1.53040 * 109.38350 * 185.70243 * 4 2 1 19 19 C 1.53042 * 109.53814 * 61.24180 * 18 4 2 20 20 C 1.53190 * 109.30948 * 298.63632 * 19 18 4 21 21 N 1.46918 * 108.78217 * 54.63354 * 20 19 18 22 22 C 1.36939 * 120.63495 * 126.36750 * 21 20 19 23 23 H 1.08001 * 119.99727 * 209.16937 * 22 21 20 24 24 C 1.38814 * 119.99675 * 28.88653 * 22 21 20 25 25 N 1.31612 * 119.99820 * 16.57391 * 24 22 21 26 26 Si 1.86796 * 119.99988 * 196.56753 * 24 22 21 27 27 H 1.48501 * 109.47074 * 94.28399 * 26 24 22 28 28 H 1.48497 * 109.47203 * 214.28309 * 26 24 22 29 29 H 1.48503 * 109.47051 * 334.28654 * 26 24 22 30 30 H 1.08995 * 109.47017 * 299.64176 * 1 2 3 31 31 H 1.09001 * 109.47135 * 59.65025 * 1 2 3 32 32 H 1.09004 * 109.46442 * 179.64357 * 1 2 3 33 33 H 0.97004 * 119.99391 * 335.15400 * 6 4 2 34 34 H 1.08998 * 109.47184 * 300.00634 * 9 7 6 35 35 H 1.09006 * 109.46389 * 60.00142 * 9 7 6 36 36 H 1.09004 * 109.47067 * 300.00528 * 11 10 9 37 37 H 1.08995 * 109.47637 * 59.99817 * 11 10 9 38 38 H 1.08001 * 120.42283 * 359.97438 * 13 12 11 39 39 H 1.07998 * 119.61815 * 180.29358 * 14 13 12 40 40 H 1.07998 * 119.62075 * 179.97438 * 16 15 14 41 41 H 1.08007 * 120.41861 * 179.97438 * 17 16 15 42 42 H 1.09003 * 109.46220 * 301.22126 * 18 4 2 43 43 H 1.09004 * 109.44620 * 181.25295 * 18 4 2 44 44 H 1.08999 * 109.49887 * 178.68356 * 19 18 4 45 45 H 1.09002 * 109.49585 * 58.58329 * 19 18 4 46 46 H 1.09003 * 109.58824 * 294.84431 * 20 19 18 47 47 H 1.08998 * 109.58604 * 174.42697 * 20 19 18 48 48 H 0.96998 * 119.99861 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0403 -0.7225 -1.2455 5 1 1.7633 -0.1570 -2.1352 6 7 1.4438 -2.0590 -1.3102 7 6 1.3202 -2.6850 -2.4973 8 8 1.7024 -2.1418 -3.5121 9 6 0.7072 -4.0601 -2.5638 10 8 0.6867 -4.5074 -3.9208 11 6 0.1212 -5.8080 -4.0956 12 6 0.1509 -6.1766 -5.5566 13 6 -0.9145 -5.8675 -6.3883 14 6 -0.8496 -6.2167 -7.7239 15 7 0.2046 -6.8453 -8.2062 16 6 1.2334 -7.1599 -7.4436 17 6 1.2418 -6.8377 -6.0997 18 6 3.5639 -0.8460 -1.1726 19 6 3.9524 -1.6685 0.0582 20 6 3.4645 -0.9518 1.3211 21 7 2.0226 -0.6995 1.1945 22 6 1.1537 -1.1134 2.1686 23 1 0.1355 -1.3662 1.9120 24 6 1.5832 -1.2137 3.4848 25 7 2.6940 -0.6170 3.8618 26 14 0.5844 -2.1954 4.7209 27 1 1.1157 -3.5800 4.7986 28 1 0.6799 -1.5530 6.0563 29 1 -0.8363 -2.2338 4.2905 30 1 -0.3633 0.5082 0.8931 31 1 -0.3633 0.5193 -0.8868 32 1 -0.3632 -1.0277 -0.0064 33 1 1.1379 -2.4934 -0.4986 34 1 1.2979 -4.7508 -1.9620 35 1 -0.3118 -4.0225 -2.1785 36 1 0.6996 -6.5353 -3.5259 37 1 -0.9098 -5.8066 -3.7419 38 1 -1.7827 -5.3571 -5.9981 39 1 -1.6732 -5.9753 -8.3794 40 1 2.0792 -7.6753 -7.8743 41 1 2.0872 -7.0984 -5.4802 42 1 4.0058 0.1477 -1.0995 43 1 3.9312 -1.3416 -2.0713 44 1 5.0365 -1.7759 0.0966 45 1 3.4906 -2.6540 -0.0023 46 1 3.9928 -0.0047 1.4311 47 1 3.6505 -1.5796 2.1925 48 1 2.9940 -0.6868 4.7816 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571525994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:18:07 Heat of formation + Delta-G solvation = -22.466691 kcal Electronic energy + Delta-G solvation = -28768.248807 eV Core-core repulsion = 24823.965417 eV Total energy + Delta-G solvation = -3944.283390 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.46469 -39.82909 -38.22491 -37.15836 -33.97286 -33.48240 -32.48291 -31.78331 -31.49870 -29.82929 -28.29797 -26.62380 -25.91547 -25.04339 -23.76025 -22.30762 -22.15539 -20.90814 -20.41104 -18.78312 -17.60457 -16.96689 -16.88937 -16.58317 -16.40064 -15.94660 -15.87437 -15.35190 -14.82972 -14.55118 -14.24921 -14.04156 -13.97829 -13.91137 -13.50803 -13.27149 -13.11851 -12.89208 -12.64356 -12.36970 -11.98493 -11.89441 -11.80379 -11.31641 -11.28517 -11.03820 -10.77588 -10.67103 -10.56348 -10.15943 -10.08129 -10.06926 -9.97580 -9.78216 -9.71405 -9.46790 -9.43069 -9.35475 -8.60954 -8.50127 -6.75067 -5.87729 -3.32405 0.83633 0.85706 2.88180 2.95018 3.28801 3.35953 3.38256 3.56220 4.00454 4.18596 4.38449 4.38756 4.51293 4.74106 4.82419 4.89621 4.99979 5.06621 5.08945 5.15320 5.25507 5.27240 5.32350 5.48933 5.53258 5.57891 5.65299 5.70721 5.91762 6.00499 6.07027 6.17441 6.27961 6.37282 6.39023 6.48920 6.61956 6.62984 6.72637 6.75452 6.89165 6.92011 7.06764 7.32195 7.60075 7.67108 7.71541 7.94638 8.35111 8.56693 9.11348 9.74741 10.31919 11.20347 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017774 B = 0.002429 C = 0.002315 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.949185 B =11524.375732 C =12091.347237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.040 0.960 4 C 0.137 3.863 5 H 0.076 0.924 6 N -0.699 5.699 7 C 0.510 3.490 8 O -0.534 6.534 9 C 0.042 3.958 10 O -0.355 6.355 11 C 0.098 3.902 12 C -0.042 4.042 13 C -0.151 4.151 14 C 0.095 3.905 15 N -0.484 5.484 16 C 0.095 3.905 17 C -0.150 4.150 18 C -0.122 4.122 19 C -0.139 4.139 20 C 0.171 3.829 21 N -0.586 5.586 22 C -0.257 4.257 23 H 0.071 0.929 24 C 0.006 3.994 25 N -0.898 5.898 26 Si 0.900 3.100 27 H -0.288 1.288 28 H -0.292 1.292 29 H -0.279 1.279 30 H 0.064 0.936 31 H 0.039 0.961 32 H 0.052 0.948 33 H 0.408 0.592 34 H 0.081 0.919 35 H 0.080 0.920 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.137 0.863 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.137 0.863 42 H 0.063 0.937 43 H 0.050 0.950 44 H 0.047 0.953 45 H 0.052 0.948 46 H 0.018 0.982 47 H 0.086 0.914 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.869 -10.946 -14.519 18.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.052 3.948 3 H 0.057 0.943 4 C 0.031 3.969 5 H 0.095 0.905 6 N -0.352 5.352 7 C 0.294 3.706 8 O -0.411 6.411 9 C -0.037 4.037 10 O -0.273 6.273 11 C 0.021 3.979 12 C -0.051 4.051 13 C -0.170 4.170 14 C -0.062 4.062 15 N -0.193 5.193 16 C -0.062 4.062 17 C -0.170 4.170 18 C -0.161 4.161 19 C -0.179 4.179 20 C 0.045 3.955 21 N -0.310 5.310 22 C -0.386 4.386 23 H 0.089 0.911 24 C -0.194 4.194 25 N -0.542 5.542 26 Si 0.730 3.270 27 H -0.215 1.215 28 H -0.218 1.218 29 H -0.204 1.204 30 H 0.083 0.917 31 H 0.058 0.942 32 H 0.071 0.929 33 H 0.245 0.755 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.155 0.845 39 H 0.175 0.825 40 H 0.175 0.825 41 H 0.155 0.845 42 H 0.081 0.919 43 H 0.069 0.931 44 H 0.066 0.934 45 H 0.071 0.929 46 H 0.036 0.964 47 H 0.104 0.896 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.446 -10.633 -16.087 19.789 hybrid contribution -0.596 -0.593 2.363 2.508 sum -5.042 -11.226 -13.724 18.434 Atomic orbital electron populations 1.21785 0.95605 1.01355 1.00545 1.20640 0.93396 0.94026 0.86779 0.94251 1.21471 0.92866 0.82742 0.99820 0.90548 1.45902 1.61782 1.18956 1.08591 1.20067 0.79626 0.86727 0.84185 1.90697 1.49180 1.66732 1.34500 1.22286 1.01534 0.95117 0.84812 1.88081 1.82684 1.31805 1.24716 1.21363 0.98759 0.85734 0.92035 1.19986 0.94102 0.95724 0.95243 1.22108 0.99701 1.00276 0.94960 1.22777 0.95994 0.94109 0.93295 1.67664 1.01011 1.11210 1.39432 1.22777 0.96347 0.96638 0.90398 1.22112 0.98513 0.99378 0.97021 1.21781 0.95477 1.00523 0.98269 1.22136 0.98968 0.99467 0.97307 1.20803 0.83184 0.97219 0.94277 1.44163 1.03174 1.64875 1.18786 1.19157 0.94772 1.38326 0.86388 0.91143 1.25089 0.97827 0.99508 0.96941 1.70032 1.23994 1.43309 1.16850 0.86325 0.79715 0.79897 0.81077 1.21544 1.21837 1.20409 0.91731 0.94169 0.92860 0.75516 0.90156 0.90212 0.91662 0.91663 0.84533 0.82545 0.82537 0.84523 0.91857 0.93088 0.93434 0.92920 0.96361 0.89589 0.93616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 7.71 37.16 0.29 -2.05 16 2 C 0.16 3.02 3.18 -67.82 -0.22 2.81 16 3 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 4 C 0.14 2.37 2.32 -68.03 -0.16 2.21 16 5 H 0.08 1.35 7.58 -51.93 -0.39 0.96 16 6 N -0.70 -11.06 3.44 -53.90 -0.19 -11.25 16 7 C 0.51 8.12 7.87 -10.99 -0.09 8.03 16 8 O -0.53 -10.65 16.16 -14.36 -0.23 -10.88 16 9 C 0.04 0.51 6.42 36.01 0.23 0.74 16 10 O -0.35 -4.71 9.86 -55.14 -0.54 -5.25 16 11 C 0.10 0.90 6.11 36.01 0.22 1.12 16 12 C -0.04 -0.42 5.55 -104.32 -0.58 -1.00 16 13 C -0.15 -1.38 9.82 -39.44 -0.39 -1.77 16 14 C 0.09 0.89 11.18 -17.55 -0.20 0.69 16 15 N -0.48 -5.25 10.36 -13.25 -0.14 -5.39 16 16 C 0.10 0.89 11.18 -17.55 -0.20 0.70 16 17 C -0.15 -1.40 9.82 -39.44 -0.39 -1.78 16 18 C -0.12 -2.12 5.58 -26.69 -0.15 -2.27 16 19 C -0.14 -2.56 5.93 -26.61 -0.16 -2.71 16 20 C 0.17 3.77 5.30 -3.72 -0.02 3.75 16 21 N -0.59 -12.97 2.66 -165.03 -0.44 -13.41 16 22 C -0.26 -6.20 8.59 -15.06 -0.13 -6.33 16 23 H 0.07 1.64 6.21 -52.49 -0.33 1.31 16 24 C 0.01 0.15 4.92 -17.43 -0.09 0.06 16 25 N -0.90 -24.52 11.23 55.49 0.62 -23.90 16 26 Si 0.90 20.17 29.58 -169.99 -5.03 15.14 16 27 H -0.29 -6.48 7.11 56.52 0.40 -6.07 16 28 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 29 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 30 H 0.06 1.21 7.62 -51.93 -0.40 0.81 16 31 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.89 6.37 -51.93 -0.33 0.56 16 33 H 0.41 6.39 7.74 -40.82 -0.32 6.07 16 34 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.07 0.49 8.10 -51.93 -0.42 0.07 16 37 H 0.07 0.48 8.10 -51.93 -0.42 0.06 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 39 H 0.16 1.03 8.06 -52.49 -0.42 0.60 16 40 H 0.16 1.04 8.06 -52.49 -0.42 0.62 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.05 0.96 7.53 -51.93 -0.39 0.57 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.09 2.14 6.10 -51.93 -0.32 1.82 16 48 H 0.25 6.78 8.31 -40.82 -0.34 6.44 16 LS Contribution 387.12 15.07 5.83 5.83 Total: -1.00 -31.54 387.12 -9.64 -41.17 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -7.52 Total: 5.73 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: -2.01 Total: 2.19 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: -0.14 Total: -53.94 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.78 Total: -16.13 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.03 Total: 15.14 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.54 -9.64 -41.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571525994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.707 kcal (2) G-P(sol) polarization free energy of solvation -31.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.638 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.173 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds