Wall clock time and date at job start Tue Mar 31 2020 17:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.30297 * 2 1 4 4 C 1.54382 * 110.34278 * 122.28550 * 2 1 3 5 5 N 1.48153 * 104.61910 * 142.73630 * 4 2 1 6 6 C 1.34768 * 127.83893 * 140.40927 * 5 4 2 7 7 O 1.21618 * 119.99830 * 179.97438 * 6 5 4 8 8 C 1.43201 * 120.00044 * 359.97438 * 6 5 4 9 9 C 5.02727 * 130.50407 * 100.84165 * 2 1 3 10 10 C 6.17710 * 124.11608 * 92.05179 * 2 1 3 11 11 C 1.52997 * 117.49902 * 345.36354 * 10 9 8 12 12 C 1.52997 * 117.50003 * 276.73952 * 10 9 8 13 13 C 1.48422 * 104.33783 * 320.39242 * 5 4 2 14 14 C 1.54289 * 110.34221 * 237.82716 * 2 1 3 15 15 H 1.09000 * 110.34215 * 0.10537 * 14 2 1 16 16 C 1.53000 * 110.34117 * 122.25927 * 14 2 1 17 17 N 1.46901 * 109.46855 * 183.52178 * 16 14 2 18 18 C 1.46898 * 111.00189 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.47176 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00279 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99735 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99904 * 179.97438 * 21 19 18 23 23 H 1.07991 * 119.99780 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99815 * 179.72596 * 22 21 19 25 25 N 1.31414 * 119.99692 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00158 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99806 * 26 24 22 28 28 H 1.48499 * 109.47039 * 209.99966 * 26 24 22 29 29 H 1.48502 * 109.46906 * 329.99872 * 26 24 22 30 30 H 1.08996 * 109.46930 * 182.17267 * 1 2 3 31 31 H 1.09002 * 109.47202 * 302.17648 * 1 2 3 32 32 H 1.09005 * 109.47351 * 62.17465 * 1 2 3 33 33 H 1.08999 * 110.41238 * 261.51981 * 4 2 1 34 34 H 1.08999 * 110.40979 * 23.84002 * 4 2 1 35 35 H 1.09005 * 115.54340 * 131.07252 * 10 9 8 36 36 H 1.08991 * 117.50135 * 359.97438 * 11 10 9 37 37 H 1.09004 * 117.49621 * 145.02273 * 11 10 9 38 38 H 1.09002 * 117.50087 * 214.98502 * 12 10 9 39 39 H 1.09001 * 117.49651 * 0.02562 * 12 10 9 40 40 H 1.08996 * 110.44929 * 280.87561 * 13 5 4 41 41 H 1.09001 * 110.49579 * 158.34847 * 13 5 4 42 42 H 1.08998 * 109.47488 * 63.52380 * 16 14 2 43 43 H 1.08993 * 109.47041 * 303.52007 * 16 14 2 44 44 H 1.00907 * 110.99760 * 56.04664 * 17 16 14 45 45 H 1.09000 * 109.46741 * 60.00112 * 18 17 16 46 46 H 1.09002 * 109.46898 * 300.00102 * 18 17 16 47 47 H 0.97005 * 120.00189 * 0.02562 * 21 19 18 48 48 H 0.96995 * 119.99830 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7732 1.2237 5 7 3.2664 -1.4824 0.7212 6 6 4.4424 -1.6676 1.3529 7 8 5.3389 -2.2776 0.8022 8 6 4.6363 -1.1463 2.6724 9 6 4.7952 -0.7190 3.7543 10 6 4.9946 -0.1831 5.1108 11 6 6.2107 -0.6799 5.8949 12 6 4.8065 -1.1454 6.2852 13 6 2.8796 -1.9432 -0.6356 14 6 2.0663 -0.7703 -1.2245 15 1 1.2398 -1.1471 -1.8270 16 6 2.9692 0.1328 -2.0673 17 7 3.4007 -0.5917 -3.2701 18 6 4.2708 0.2465 -4.1058 19 6 4.6919 -0.5285 -5.3277 20 8 4.3048 -1.6668 -5.4871 21 7 5.4977 0.0438 -6.2440 22 6 5.8812 -0.6614 -7.3555 23 1 5.5373 -1.6752 -7.4970 24 6 6.7074 -0.0693 -8.3030 25 7 7.0746 -0.7451 -9.3686 26 14 7.2961 1.6870 -8.0621 27 1 8.5775 1.6810 -7.3114 28 1 7.5013 2.3264 -9.3866 29 1 6.2776 2.4498 -7.2966 30 1 -0.3633 -1.0269 0.0390 31 1 -0.3634 0.5473 0.8698 32 1 -0.3634 0.4797 -0.9089 33 1 2.3401 -0.0814 2.0205 34 1 1.3227 -1.4861 1.5791 35 1 4.6908 0.8537 5.2559 36 1 6.8630 -1.4038 5.4067 37 1 6.7075 0.0302 6.5562 38 1 4.3794 -0.7418 7.2033 39 1 4.5356 -2.1755 6.0535 40 1 2.2624 -2.8393 -0.5719 41 1 3.7657 -2.1330 -1.2413 42 1 3.8433 0.4198 -1.4829 43 1 2.4180 1.0265 -2.3596 44 1 2.6066 -0.9248 -3.7960 45 1 5.1540 0.5347 -3.5357 46 1 3.7283 1.1408 -4.4123 47 1 5.8070 0.9544 -6.1168 48 1 7.6516 -0.3320 -10.0298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672274247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:06 Heat of formation + Delta-G solvation = 17.342685 kcal Electronic energy + Delta-G solvation = -27385.675162 eV Core-core repulsion = 23443.118036 eV Total energy + Delta-G solvation = -3942.557126 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.37477 -38.56010 -38.17124 -37.96837 -35.38864 -33.88083 -33.34337 -32.72135 -31.63333 -30.53717 -27.50924 -26.79010 -25.73183 -24.43484 -23.53148 -22.96644 -22.10413 -21.13007 -20.13185 -19.30981 -18.39766 -18.15120 -17.13520 -16.42922 -16.14617 -16.10880 -15.53093 -15.43774 -14.89642 -14.72143 -14.37490 -14.20661 -13.86004 -13.45416 -13.37516 -13.13247 -13.07628 -12.90684 -12.51455 -12.45675 -12.29740 -12.18491 -12.08813 -12.00050 -11.81261 -11.71075 -11.62962 -11.16273 -11.07839 -10.94469 -10.73863 -10.62605 -10.56577 -10.37727 -10.09622 -9.94044 -9.53443 -8.97341 -8.55570 -8.15829 -8.10528 -6.27518 -3.78660 1.27562 1.86434 2.62726 3.04976 3.10151 3.11978 3.17517 3.54324 3.64867 3.78222 3.97288 4.13520 4.22648 4.24083 4.33234 4.39715 4.52516 4.55683 4.90601 4.92794 4.96481 5.01502 5.06865 5.09488 5.16346 5.24556 5.26206 5.29295 5.37820 5.46887 5.53108 5.53336 5.56639 5.66326 5.67570 5.77297 5.82344 5.83829 5.84396 5.98261 6.06307 6.20716 6.89713 7.09617 7.25178 7.59807 7.62360 7.88423 8.18512 8.63659 8.98804 9.46343 9.86833 10.85700 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.002132 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.969391 B =13130.150361 C =14317.065127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.102 4.102 3 H 0.083 0.917 4 C 0.105 3.895 5 N -0.614 5.614 6 C 0.650 3.350 7 O -0.513 6.513 8 C -0.206 4.206 9 C -0.061 4.061 10 C -0.065 4.065 11 C -0.161 4.161 12 C -0.160 4.160 13 C 0.115 3.885 14 C -0.095 4.095 15 H 0.092 0.908 16 C 0.067 3.933 17 N -0.668 5.668 18 C 0.049 3.951 19 C 0.451 3.549 20 O -0.563 6.563 21 N -0.592 5.592 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.136 0.864 36 H 0.102 0.898 37 H 0.108 0.892 38 H 0.108 0.892 39 H 0.100 0.900 40 H 0.073 0.927 41 H 0.108 0.892 42 H 0.071 0.929 43 H 0.030 0.970 44 H 0.350 0.650 45 H 0.086 0.914 46 H 0.044 0.956 47 H 0.370 0.630 48 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 7.121 31.235 34.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 H 0.102 0.898 4 C -0.018 4.018 5 N -0.347 5.347 6 C 0.438 3.562 7 O -0.390 6.390 8 C -0.208 4.208 9 C -0.064 4.064 10 C -0.082 4.082 11 C -0.198 4.198 12 C -0.196 4.196 13 C -0.007 4.007 14 C -0.115 4.115 15 H 0.110 0.890 16 C -0.062 4.062 17 N -0.300 5.300 18 C -0.084 4.084 19 C 0.237 3.763 20 O -0.445 6.445 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.079 0.921 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.154 0.846 36 H 0.121 0.879 37 H 0.127 0.873 38 H 0.127 0.873 39 H 0.119 0.881 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.089 0.911 43 H 0.048 0.952 44 H 0.170 0.830 45 H 0.104 0.896 46 H 0.062 0.938 47 H 0.203 0.797 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -11.409 5.647 30.951 33.467 hybrid contribution -0.081 2.204 -0.386 2.239 sum -11.490 7.851 30.565 33.584 Atomic orbital electron populations 1.21825 0.93615 1.02315 1.02227 1.22145 0.96338 0.99816 0.93913 0.89827 1.22521 0.86819 0.95615 0.96865 1.48812 1.12169 1.55551 1.18214 1.14147 0.81174 0.79489 0.81341 1.90929 1.41075 1.40957 1.66006 1.20578 1.03501 1.02659 0.94102 1.21299 0.97913 0.94740 0.92406 1.18906 1.06038 0.99458 0.83836 1.23134 0.91005 1.03716 1.01936 1.23107 0.99730 0.99619 0.97182 1.22535 1.00938 0.95851 0.81347 1.22217 0.98009 0.95669 0.95589 0.88970 1.22015 0.97931 0.94194 0.92088 1.60027 1.23590 1.38348 1.08048 1.21685 0.98038 0.94316 0.94313 1.19701 0.83648 0.88201 0.84793 1.90563 1.57906 1.18392 1.77637 1.42209 1.45149 1.14552 1.21201 1.19437 1.27446 1.00405 0.95965 0.86268 1.25040 0.97244 0.98323 0.95612 1.69624 1.35262 1.37114 1.10206 0.86668 0.79628 0.84511 0.78551 1.19589 1.20216 1.19579 0.92130 0.92382 0.91934 0.90465 0.90574 0.84639 0.87937 0.87317 0.87324 0.88112 0.90833 0.87372 0.91091 0.95184 0.83019 0.89555 0.93827 0.79727 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.76 8.92 37.16 0.33 -0.43 16 2 C -0.10 -0.72 3.31 -89.22 -0.30 -1.02 16 3 H 0.08 0.59 7.71 -51.93 -0.40 0.19 16 4 C 0.10 0.81 6.44 -2.41 -0.02 0.80 16 5 N -0.61 -7.10 3.32 -171.94 -0.57 -7.67 16 6 C 0.65 9.39 7.76 -14.34 -0.11 9.28 16 7 O -0.51 -9.66 17.36 5.26 0.09 -9.57 16 8 C -0.21 -2.52 12.50 -38.84 -0.49 -3.00 16 9 C -0.06 -0.60 13.47 -37.12 -0.50 -1.10 16 10 C -0.06 -0.40 6.22 -93.41 -0.58 -0.98 16 11 C -0.16 -0.83 10.21 -26.73 -0.27 -1.10 16 12 C -0.16 -0.73 10.21 -26.73 -0.27 -1.00 16 13 C 0.11 1.34 6.54 -2.25 -0.01 1.33 16 14 C -0.10 -0.90 2.88 -89.21 -0.26 -1.15 16 15 H 0.09 0.79 7.71 -51.93 -0.40 0.39 16 16 C 0.07 0.78 4.81 -3.82 -0.02 0.76 16 17 N -0.67 -10.31 5.64 -115.06 -0.65 -10.96 16 18 C 0.05 0.84 6.17 -4.98 -0.03 0.81 16 19 C 0.45 10.52 7.82 -10.99 -0.09 10.43 16 20 O -0.56 -15.42 15.78 5.55 0.09 -15.33 16 21 N -0.59 -14.50 5.09 -10.96 -0.06 -14.55 16 22 C -0.30 -8.80 10.16 -14.93 -0.15 -8.95 16 23 H 0.12 3.93 7.39 -52.49 -0.39 3.55 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -26.24 13.96 55.50 0.77 -25.46 16 26 Si 0.88 19.83 27.73 -169.99 -4.71 15.11 16 27 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -5.54 6.52 56.52 0.37 -5.18 16 30 H 0.06 0.31 8.10 -51.93 -0.42 -0.11 16 31 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.08 0.54 7.44 -51.93 -0.39 0.16 16 34 H 0.08 0.49 7.83 -51.93 -0.41 0.09 16 35 H 0.14 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.11 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.11 0.28 8.14 -51.93 -0.42 -0.14 16 39 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 41 H 0.11 1.67 7.25 -51.93 -0.38 1.29 16 42 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.03 0.31 8.14 -51.93 -0.42 -0.11 16 44 H 0.35 5.43 8.43 -39.29 -0.33 5.10 16 45 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 46 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 47 H 0.37 7.99 5.76 -40.82 -0.24 7.75 16 48 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 406.17 15.07 6.12 6.12 Total: -1.00 -36.43 406.17 -9.36 -45.79 By element: Atomic # 1 Polarization: 18.41 SS G_CDS: -7.59 Total: 10.83 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -2.86 Total: 5.70 kcal Atomic # 7 Polarization: -58.15 SS G_CDS: -0.50 Total: -58.65 kcal Atomic # 8 Polarization: -25.08 SS G_CDS: 0.18 Total: -24.90 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.43 -9.36 -45.79 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672274247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.133 kcal (2) G-P(sol) polarization free energy of solvation -36.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.790 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds