Wall clock time and date at job start Tue Mar 31 2020 17:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 110.30297 * 2 1 4 4 C 1.54382 * 110.34278 * 122.28550 * 2 1 3 5 5 N 1.48153 * 104.61910 * 142.73630 * 4 2 1 6 6 C 1.34768 * 127.83893 * 140.40927 * 5 4 2 7 7 O 1.21618 * 119.99830 * 179.97438 * 6 5 4 8 8 C 1.43201 * 120.00044 * 359.97438 * 6 5 4 9 9 C 5.02727 * 130.50407 * 100.84165 * 2 1 3 10 10 C 6.17710 * 124.11608 * 92.05179 * 2 1 3 11 11 C 1.52997 * 117.49902 * 345.36354 * 10 9 8 12 12 C 1.52997 * 117.50003 * 276.73952 * 10 9 8 13 13 C 1.48422 * 104.33783 * 320.39242 * 5 4 2 14 14 C 1.54289 * 110.34221 * 237.82716 * 2 1 3 15 15 H 1.09000 * 110.34215 * 0.10537 * 14 2 1 16 16 C 1.53000 * 110.34117 * 122.25927 * 14 2 1 17 17 N 1.46901 * 109.46855 * 183.52178 * 16 14 2 18 18 C 1.46898 * 111.00189 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.47176 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00279 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99735 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99904 * 179.97438 * 21 19 18 23 23 H 1.07991 * 119.99780 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99815 * 179.72596 * 22 21 19 25 25 N 1.31414 * 119.99692 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 120.00158 * 0.02562 * 24 22 21 27 27 H 1.48501 * 109.46896 * 89.99806 * 26 24 22 28 28 H 1.48499 * 109.47039 * 209.99966 * 26 24 22 29 29 H 1.48502 * 109.46906 * 329.99872 * 26 24 22 30 30 H 1.08996 * 109.46930 * 182.17267 * 1 2 3 31 31 H 1.09002 * 109.47202 * 302.17648 * 1 2 3 32 32 H 1.09005 * 109.47351 * 62.17465 * 1 2 3 33 33 H 1.08999 * 110.41238 * 261.51981 * 4 2 1 34 34 H 1.08999 * 110.40979 * 23.84002 * 4 2 1 35 35 H 1.09005 * 115.54340 * 131.07252 * 10 9 8 36 36 H 1.08991 * 117.50135 * 359.97438 * 11 10 9 37 37 H 1.09004 * 117.49621 * 145.02273 * 11 10 9 38 38 H 1.09002 * 117.50087 * 214.98502 * 12 10 9 39 39 H 1.09001 * 117.49651 * 0.02562 * 12 10 9 40 40 H 1.08996 * 110.44929 * 280.87561 * 13 5 4 41 41 H 1.09001 * 110.49579 * 158.34847 * 13 5 4 42 42 H 1.08998 * 109.47488 * 63.52380 * 16 14 2 43 43 H 1.08993 * 109.47041 * 303.52007 * 16 14 2 44 44 H 1.00907 * 110.99760 * 56.04664 * 17 16 14 45 45 H 1.09000 * 109.46741 * 60.00112 * 18 17 16 46 46 H 1.09002 * 109.46898 * 300.00102 * 18 17 16 47 47 H 0.97005 * 120.00189 * 0.02562 * 21 19 18 48 48 H 0.96995 * 119.99830 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0667 -0.7732 1.2237 5 7 3.2664 -1.4824 0.7212 6 6 4.4424 -1.6676 1.3529 7 8 5.3389 -2.2776 0.8022 8 6 4.6363 -1.1463 2.6724 9 6 4.7952 -0.7190 3.7543 10 6 4.9946 -0.1831 5.1108 11 6 6.2107 -0.6799 5.8949 12 6 4.8065 -1.1454 6.2852 13 6 2.8796 -1.9432 -0.6356 14 6 2.0663 -0.7703 -1.2245 15 1 1.2398 -1.1471 -1.8270 16 6 2.9692 0.1328 -2.0673 17 7 3.4007 -0.5917 -3.2701 18 6 4.2708 0.2465 -4.1058 19 6 4.6919 -0.5285 -5.3277 20 8 4.3048 -1.6668 -5.4871 21 7 5.4977 0.0438 -6.2440 22 6 5.8812 -0.6614 -7.3555 23 1 5.5373 -1.6752 -7.4970 24 6 6.7074 -0.0693 -8.3030 25 7 7.0746 -0.7451 -9.3686 26 14 7.2961 1.6870 -8.0621 27 1 8.5775 1.6810 -7.3114 28 1 7.5013 2.3264 -9.3866 29 1 6.2776 2.4498 -7.2966 30 1 -0.3633 -1.0269 0.0390 31 1 -0.3634 0.5473 0.8698 32 1 -0.3634 0.4797 -0.9089 33 1 2.3401 -0.0814 2.0205 34 1 1.3227 -1.4861 1.5791 35 1 4.6908 0.8537 5.2559 36 1 6.8630 -1.4038 5.4067 37 1 6.7075 0.0302 6.5562 38 1 4.3794 -0.7418 7.2033 39 1 4.5356 -2.1755 6.0535 40 1 2.2624 -2.8393 -0.5719 41 1 3.7657 -2.1330 -1.2413 42 1 3.8433 0.4198 -1.4829 43 1 2.4180 1.0265 -2.3596 44 1 2.6066 -0.9248 -3.7960 45 1 5.1540 0.5347 -3.5357 46 1 3.7283 1.1408 -4.4123 47 1 5.8070 0.9544 -6.1168 48 1 7.6516 -0.3320 -10.0298 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672274247.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:05 Heat of formation + Delta-G solvation = -9.617362 kcal Electronic energy + Delta-G solvation = -27386.844237 eV Core-core repulsion = 23443.118036 eV Total energy + Delta-G solvation = -3943.726201 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.30523 -40.31742 -39.22535 -38.50818 -36.68561 -35.87108 -34.25679 -33.76734 -33.46858 -31.49677 -28.83974 -27.52955 -26.99018 -25.57542 -24.75043 -23.31483 -22.97201 -21.88123 -21.38696 -20.88395 -20.22167 -19.10516 -17.88708 -17.78556 -17.26705 -17.08174 -17.02851 -16.58884 -15.93208 -15.81087 -15.51257 -15.42903 -15.15554 -14.98993 -14.51262 -14.36930 -14.08896 -13.76089 -13.63931 -13.58347 -13.30931 -13.18205 -13.02248 -12.94220 -12.73001 -12.60004 -12.44977 -12.43336 -12.33979 -11.99856 -11.82354 -11.63856 -11.54291 -11.53724 -11.50918 -11.09863 -10.75422 -10.46421 -10.27028 -9.91523 -9.32291 -8.43305 -6.04281 0.36235 1.06082 1.27580 1.33960 1.42310 1.75509 1.92715 2.21060 2.27466 2.68502 2.89296 3.04468 3.12619 3.32762 3.53183 3.64478 3.80339 3.81760 3.97978 4.00483 4.11407 4.18540 4.27900 4.37194 4.39827 4.46443 4.51221 4.52725 4.61043 4.70652 4.75201 4.76873 4.84688 4.92001 4.96998 4.99466 5.07381 5.16991 5.19600 5.20933 5.33259 5.50276 5.53138 5.87788 6.01500 6.08335 6.31306 6.41867 6.57564 6.84866 6.85553 7.37017 7.93534 8.74420 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.013236 B = 0.002132 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2114.969391 B =13130.150361 C =14317.065127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.090 4.090 3 H 0.090 0.910 4 C 0.102 3.898 5 N -0.610 5.610 6 C 0.643 3.357 7 O -0.579 6.579 8 C -0.261 4.261 9 C -0.023 4.023 10 C -0.083 4.083 11 C -0.162 4.162 12 C -0.146 4.146 13 C 0.110 3.890 14 C -0.088 4.088 15 H 0.105 0.895 16 C 0.072 3.928 17 N -0.689 5.689 18 C 0.064 3.936 19 C 0.448 3.552 20 O -0.612 6.612 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.055 0.945 24 C -0.016 4.016 25 N -0.933 5.933 26 Si 0.966 3.034 27 H -0.260 1.260 28 H -0.272 1.272 29 H -0.231 1.231 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.165 0.835 36 H 0.084 0.916 37 H 0.133 0.867 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.084 0.916 41 H 0.064 0.936 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.349 0.651 45 H 0.102 0.898 46 H 0.082 0.918 47 H 0.389 0.611 48 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.018 11.456 34.779 39.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 H 0.109 0.891 4 C -0.019 4.019 5 N -0.341 5.341 6 C 0.434 3.566 7 O -0.461 6.461 8 C -0.264 4.264 9 C -0.025 4.025 10 C -0.100 4.100 11 C -0.199 4.199 12 C -0.183 4.183 13 C -0.012 4.012 14 C -0.107 4.107 15 H 0.123 0.877 16 C -0.056 4.056 17 N -0.322 5.322 18 C -0.068 4.068 19 C 0.236 3.764 20 O -0.497 6.497 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.073 0.927 24 C -0.214 4.214 25 N -0.574 5.574 26 Si 0.785 3.215 27 H -0.185 1.185 28 H -0.197 1.197 29 H -0.154 1.154 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.182 0.818 36 H 0.103 0.897 37 H 0.151 0.849 38 H 0.155 0.845 39 H 0.109 0.891 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.168 0.832 45 H 0.120 0.880 46 H 0.099 0.901 47 H 0.225 0.775 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -13.110 10.015 34.533 38.271 hybrid contribution 0.372 0.711 -1.406 1.619 sum -12.737 10.726 33.126 37.076 Atomic orbital electron populations 1.21804 0.91661 1.02878 1.03152 1.22107 0.97698 0.99424 0.91760 0.89122 1.22814 0.85422 0.96090 0.97583 1.48919 1.12447 1.54721 1.17992 1.14497 0.81192 0.78839 0.82083 1.90872 1.43287 1.44174 1.67753 1.20338 1.06467 1.05107 0.94452 1.22125 0.95325 0.92426 0.92656 1.19348 1.07490 1.01126 0.82026 1.23244 0.91045 1.03838 1.01754 1.23233 0.99053 0.98811 0.97161 1.22533 0.99584 0.97758 0.81323 1.22207 0.97490 0.94645 0.96378 0.87657 1.22048 0.98071 0.95139 0.90371 1.59992 1.23880 1.39512 1.08851 1.21574 0.99465 0.94349 0.91432 1.20985 0.81755 0.87934 0.85767 1.90539 1.59227 1.20994 1.78915 1.42038 1.45760 1.15190 1.20324 1.19017 1.29300 0.98868 0.98725 0.92704 1.26136 0.96405 1.04547 0.94358 1.69805 1.36009 1.40104 1.11488 0.85355 0.80014 0.76748 0.79341 1.18460 1.19677 1.15382 0.91860 0.90813 0.91607 0.89286 0.88760 0.81754 0.89698 0.84863 0.84465 0.89130 0.89796 0.91750 0.92342 0.92512 0.83210 0.88019 0.90071 0.77518 0.91101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.92 71.98 0.64 -0.31 16 2 C -0.09 -1.02 3.31 -9.89 -0.03 -1.05 16 3 H 0.09 0.96 7.71 -2.39 -0.02 0.94 16 4 C 0.10 1.39 6.44 86.53 0.56 1.94 16 5 N -0.61 -14.39 3.32 -816.16 -2.71 -17.10 16 6 C 0.64 19.83 7.76 85.49 0.66 20.50 16 7 O -0.58 -23.90 17.36 -4.09 -0.07 -23.97 16 8 C -0.26 -6.55 12.50 30.02 0.38 -6.17 16 9 C -0.02 -0.43 13.47 31.13 0.42 -0.01 16 10 C -0.08 -0.78 6.22 -12.60 -0.08 -0.86 16 11 C -0.16 -1.28 10.21 30.59 0.31 -0.97 16 12 C -0.15 -0.91 10.21 30.59 0.31 -0.60 16 13 C 0.11 2.66 6.54 86.48 0.57 3.23 16 14 C -0.09 -1.53 2.88 -9.88 -0.03 -1.55 16 15 H 0.11 1.60 7.71 -2.39 -0.02 1.58 16 16 C 0.07 1.55 4.81 86.30 0.42 1.96 16 17 N -0.69 -20.98 5.64 -517.95 -2.92 -23.90 16 18 C 0.06 2.09 6.17 85.56 0.53 2.62 16 19 C 0.45 21.21 7.82 87.66 0.69 21.90 16 20 O -0.61 -35.30 15.78 -3.05 -0.05 -35.35 16 21 N -0.59 -29.14 5.09 -306.99 -1.56 -30.70 16 22 C -0.33 -20.01 10.16 84.04 0.85 -19.15 16 23 H 0.05 3.95 7.39 -2.92 -0.02 3.92 16 24 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 25 N -0.93 -57.64 13.96 21.66 0.30 -57.33 16 26 Si 0.97 40.05 27.73 68.60 1.90 41.95 16 27 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 28 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 29 H -0.23 -8.03 6.52 99.48 0.65 -7.38 16 30 H 0.06 0.43 8.10 -2.39 -0.02 0.42 16 31 H 0.07 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.06 0.46 8.14 -2.38 -0.02 0.45 16 33 H 0.09 1.04 7.44 -2.39 -0.02 1.02 16 34 H 0.09 0.97 7.83 -2.39 -0.02 0.96 16 35 H 0.17 0.66 8.14 -2.38 -0.02 0.64 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.13 0.41 8.14 -2.38 -0.02 0.40 16 38 H 0.14 0.12 8.14 -2.39 -0.02 0.10 16 39 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 41 H 0.06 2.16 7.25 -2.39 -0.02 2.14 16 42 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 43 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 44 H 0.35 10.74 8.43 -89.69 -0.76 9.98 16 45 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 47 H 0.39 15.95 5.76 -92.70 -0.53 15.41 16 48 H 0.28 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -89.80 406.17 1.19 -88.62 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: -0.36 Total: 36.77 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 6.66 Total: 21.02 kcal Atomic # 7 Polarization: -122.15 SS G_CDS: -6.89 Total: -129.04 kcal Atomic # 8 Polarization: -59.20 SS G_CDS: -0.12 Total: -59.32 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 1.90 Total: 41.95 kcal Total: -89.80 1.19 -88.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672274247.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.001 kcal (2) G-P(sol) polarization free energy of solvation -89.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds