Wall clock time and date at job start Tue Mar 31 2020 17:54:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.89089 * 2 1 4 4 C 1.55129 * 110.90796 * 124.09469 * 2 1 3 5 5 N 1.47421 * 104.72458 * 155.27192 * 4 2 1 6 6 C 1.34784 * 125.64843 * 155.81647 * 5 4 2 7 7 O 1.21283 * 119.99667 * 359.71852 * 6 5 4 8 8 C 1.50693 * 119.99987 * 179.72186 * 6 5 4 9 9 C 1.53001 * 109.47176 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47362 * 179.97438 * 9 8 6 11 11 O 1.42895 * 109.47302 * 179.97438 * 10 9 8 12 12 C 1.35912 * 117.00300 * 180.02562 * 11 10 9 13 13 C 1.39136 * 120.47341 * 180.02562 * 12 11 10 14 14 C 1.38541 * 118.37335 * 180.02562 * 13 12 11 15 15 C 1.38253 * 119.21782 * 359.97438 * 14 13 12 16 16 N 1.31847 * 120.89263 * 0.02562 * 15 14 13 17 17 C 1.31843 * 121.77386 * 359.69979 * 16 15 14 18 18 C 1.47018 * 108.70379 * 335.55582 * 5 4 2 19 19 C 1.54320 * 107.27210 * 1.28563 * 18 5 4 20 20 H 1.08996 * 110.72172 * 140.55457 * 19 18 5 21 21 N 1.46499 * 110.71965 * 263.65361 * 19 18 5 22 22 C 1.36941 * 119.99860 * 273.54368 * 21 19 18 23 23 H 1.08000 * 120.00140 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00053 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99678 * 0.02562 * 24 22 21 26 26 Si 1.86789 * 120.00040 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47415 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47625 * 120.00266 * 26 24 22 29 29 H 1.48503 * 109.47330 * 239.99845 * 26 24 22 30 30 H 1.08998 * 109.46704 * 183.88260 * 1 2 3 31 31 H 1.08991 * 109.46921 * 303.87939 * 1 2 3 32 32 H 1.08994 * 109.46913 * 63.88086 * 1 2 3 33 33 H 1.09005 * 110.49746 * 36.43606 * 4 2 1 34 34 H 1.08997 * 110.34301 * 274.04013 * 4 2 1 35 35 H 1.09002 * 109.47106 * 299.99491 * 8 6 5 36 36 H 1.09003 * 109.47551 * 59.99749 * 8 6 5 37 37 H 1.09004 * 109.46992 * 299.99543 * 9 8 6 38 38 H 1.09003 * 109.47284 * 59.99343 * 9 8 6 39 39 H 1.08996 * 109.47024 * 300.00117 * 10 9 8 40 40 H 1.08997 * 109.46885 * 59.99795 * 10 9 8 41 41 H 1.07995 * 120.81595 * 0.02562 * 13 12 11 42 42 H 1.08000 * 120.38971 * 180.02562 * 14 13 12 43 43 H 1.08007 * 119.55194 * 179.97438 * 15 14 13 44 44 H 1.08008 * 119.65553 * 180.28832 * 17 16 15 45 45 H 1.09010 * 109.88204 * 120.70275 * 18 5 4 46 46 H 1.09004 * 109.88434 * 241.70985 * 18 5 4 47 47 H 0.97004 * 120.00265 * 93.54302 * 21 19 18 48 48 H 0.97006 * 120.00210 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4271 -1.2434 0.7729 6 6 4.4477 -1.5622 1.5935 7 8 4.3009 -1.5010 2.7958 8 6 5.7712 -1.9947 1.0170 9 6 6.7487 -2.2967 2.1546 10 6 8.0923 -2.7363 1.5694 11 8 9.0054 -3.0178 2.6319 12 6 10.2542 -3.4236 2.2810 13 6 11.2009 -3.7175 3.2574 14 6 12.4606 -4.1268 2.8509 15 6 12.7333 -4.2296 1.4995 16 7 11.8133 -3.9436 0.5995 17 6 10.6013 -3.5559 0.9447 18 6 3.4674 -1.2739 -0.6964 19 6 2.0862 -0.8075 -1.2025 20 1 2.1922 -0.1692 -2.0796 21 7 1.2283 -1.9569 -1.5009 22 6 1.2848 -2.5519 -2.7330 23 1 1.9621 -2.1741 -3.4846 24 6 0.4723 -3.6414 -3.0156 25 7 -0.3527 -4.1021 -2.0994 26 14 0.5498 -4.4534 -4.6959 27 1 1.5497 -3.7508 -5.5396 28 1 0.9450 -5.8764 -4.5404 29 1 -0.7842 -4.3783 -5.3441 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3633 0.5728 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4525 -1.6787 1.3982 34 1 2.1516 -0.1809 2.0859 35 1 5.6290 -2.8909 0.4132 36 1 6.1741 -1.1966 0.3935 37 1 6.8910 -1.4007 2.7589 38 1 6.3456 -3.0949 2.7779 39 1 7.9497 -3.6324 0.9654 40 1 8.4956 -1.9384 0.9460 41 1 10.9599 -3.6287 4.3063 42 1 13.2202 -4.3636 3.5812 43 1 13.7137 -4.5479 1.1766 44 1 9.8726 -3.3346 0.1788 45 1 4.2427 -0.5994 -1.0601 46 1 3.6678 -2.2885 -1.0408 47 1 0.6202 -2.2966 -0.8257 48 1 -0.9203 -4.8637 -2.2966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673930098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:49 Heat of formation + Delta-G solvation = -29.313719 kcal Electronic energy + Delta-G solvation = -27696.899061 eV Core-core repulsion = 23752.318762 eV Total energy + Delta-G solvation = -3944.580299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.91803 -39.89417 -38.56529 -37.71039 -34.09643 -33.98083 -32.65114 -32.35784 -30.61785 -30.48812 -28.08491 -27.69754 -25.81140 -24.17063 -23.88451 -23.32565 -22.25039 -21.52606 -19.34468 -19.05982 -18.38718 -17.62300 -17.15393 -16.92290 -16.76659 -16.44933 -15.88503 -15.34350 -14.84554 -14.69731 -14.54981 -14.22312 -13.90986 -13.78701 -13.43864 -13.36398 -13.06116 -12.97864 -12.65592 -12.53268 -12.33293 -12.14740 -11.99278 -11.73363 -11.59689 -11.51039 -11.16111 -10.98456 -10.92897 -10.81768 -10.51624 -10.27828 -10.07964 -9.96333 -9.79471 -9.74613 -9.64150 -9.06765 -8.80198 -8.29360 -7.12075 -5.89142 -3.19416 0.74896 0.93520 2.64880 2.84235 3.34366 3.35583 3.41529 3.44014 3.44929 4.13988 4.30001 4.45089 4.47984 4.55131 4.62202 4.66706 4.80362 4.85031 4.97362 5.10915 5.12833 5.14062 5.19159 5.24456 5.31567 5.44711 5.48766 5.59785 5.60930 5.72086 5.73255 5.86350 5.88999 5.91723 6.02829 6.14141 6.17477 6.21607 6.30344 6.31969 6.48040 6.58481 6.70377 6.88288 6.90546 7.59155 7.59941 7.84325 8.28589 8.38488 9.40744 9.95442 10.30034 11.32920 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.002201 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.082001 B =12716.678474 C =14482.476209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.114 4.114 3 H 0.079 0.921 4 C 0.115 3.885 5 N -0.607 5.607 6 C 0.527 3.473 7 O -0.555 6.555 8 C -0.133 4.133 9 C -0.101 4.101 10 C 0.056 3.944 11 O -0.306 6.306 12 C 0.085 3.915 13 C -0.112 4.112 14 C -0.132 4.132 15 C 0.055 3.945 16 N -0.450 5.450 17 C 0.016 3.984 18 C 0.070 3.930 19 C 0.172 3.828 20 H 0.070 0.930 21 N -0.712 5.712 22 C -0.247 4.247 23 H 0.073 0.927 24 C -0.009 4.009 25 N -0.928 5.928 26 Si 0.907 3.093 27 H -0.280 1.280 28 H -0.292 1.292 29 H -0.291 1.291 30 H 0.069 0.931 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.098 0.902 36 H 0.094 0.906 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.157 0.843 44 H 0.159 0.841 45 H 0.055 0.945 46 H 0.078 0.922 47 H 0.387 0.613 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.826 5.142 8.232 22.074 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.134 4.134 3 H 0.097 0.903 4 C -0.008 4.008 5 N -0.339 5.339 6 C 0.315 3.685 7 O -0.434 6.434 8 C -0.173 4.173 9 C -0.139 4.139 10 C -0.019 4.019 11 O -0.218 6.218 12 C 0.037 3.963 13 C -0.139 4.139 14 C -0.152 4.152 15 C -0.103 4.103 16 N -0.159 5.159 17 C -0.142 4.142 18 C -0.056 4.056 19 C 0.059 3.941 20 H 0.088 0.912 21 N -0.353 5.353 22 C -0.378 4.378 23 H 0.091 0.909 24 C -0.205 4.205 25 N -0.576 5.576 26 Si 0.738 3.262 27 H -0.205 1.205 28 H -0.219 1.219 29 H -0.218 1.218 30 H 0.088 0.912 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.100 0.900 38 H 0.101 0.899 39 H 0.087 0.913 40 H 0.085 0.915 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.174 0.826 44 H 0.177 0.823 45 H 0.073 0.927 46 H 0.096 0.904 47 H 0.223 0.777 48 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 19.901 5.047 8.026 22.044 hybrid contribution -0.364 -0.674 -0.146 0.780 sum 19.537 4.373 7.879 21.515 Atomic orbital electron populations 1.21545 0.93386 1.02980 1.00999 1.22652 0.96978 0.98405 0.95334 0.90306 1.22306 0.82888 0.98346 0.97247 1.48466 1.11930 1.65651 1.07897 1.20066 0.84959 0.77297 0.86154 1.90681 1.83527 1.54535 1.14704 1.21470 0.92995 1.03753 0.99072 1.21218 0.90879 1.03858 0.97958 1.22968 0.89189 1.00707 0.89062 1.86091 1.19137 1.80851 1.35750 1.20108 0.85999 0.95832 0.94398 1.20991 0.92096 1.00938 0.99828 1.22033 0.96521 0.98945 0.97712 1.22679 0.98928 0.99440 0.89262 1.67540 1.00998 1.08646 1.38750 1.23000 0.95205 1.02382 0.93659 1.23306 1.01591 1.02197 0.78514 1.21198 0.88332 0.89884 0.94660 0.91216 1.42462 1.45454 1.32791 1.14632 1.19261 1.18590 1.09444 0.90483 0.90930 1.24761 0.98937 0.98897 0.97950 1.69665 1.27328 1.27378 1.33195 0.86133 0.77285 0.79196 0.83605 1.20485 1.21858 1.21814 0.91210 0.93647 0.92084 0.91225 0.91321 0.88378 0.88743 0.89987 0.89859 0.91346 0.91502 0.83954 0.84084 0.82555 0.82344 0.92699 0.90411 0.77736 0.93394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.00 8.85 37.16 0.33 -1.67 16 2 C -0.11 -1.70 3.53 -88.35 -0.31 -2.02 16 3 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 4 C 0.11 1.84 6.36 -2.41 -0.02 1.83 16 5 N -0.61 -9.68 3.32 -170.38 -0.57 -10.25 16 6 C 0.53 8.28 7.85 -10.99 -0.09 8.19 16 7 O -0.56 -10.47 16.24 5.56 0.09 -10.38 16 8 C -0.13 -1.50 4.89 -27.89 -0.14 -1.63 16 9 C -0.10 -1.09 4.87 -26.73 -0.13 -1.22 16 10 C 0.06 0.50 4.75 37.16 0.18 0.68 16 11 O -0.31 -3.29 10.15 -19.46 -0.20 -3.49 16 12 C 0.08 0.86 6.71 -39.08 -0.26 0.59 16 13 C -0.11 -0.95 10.13 -39.14 -0.40 -1.35 16 14 C -0.13 -0.93 10.11 -39.46 -0.40 -1.33 16 15 C 0.05 0.45 11.18 -17.54 -0.20 0.25 16 16 N -0.45 -4.83 10.36 -13.12 -0.14 -4.97 16 17 C 0.02 0.16 10.22 -17.37 -0.18 -0.02 16 18 C 0.07 1.09 6.22 -3.07 -0.02 1.07 16 19 C 0.17 2.99 3.36 -66.10 -0.22 2.76 16 20 H 0.07 1.19 8.12 -51.93 -0.42 0.77 16 21 N -0.71 -15.96 4.62 -51.65 -0.24 -16.20 16 22 C -0.25 -6.25 9.98 -15.06 -0.15 -6.40 16 23 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 24 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 25 N -0.93 -26.61 13.06 55.49 0.72 -25.88 16 26 Si 0.91 21.26 29.55 -169.99 -5.02 16.24 16 27 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 29 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 30 H 0.07 1.24 6.39 -51.93 -0.33 0.91 16 31 H 0.04 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 33 H 0.07 1.24 7.99 -51.93 -0.41 0.82 16 34 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 35 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.08 0.95 8.10 -51.93 -0.42 0.53 16 38 H 0.08 1.02 8.10 -51.93 -0.42 0.60 16 39 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 40 H 0.07 0.49 7.69 -51.93 -0.40 0.10 16 41 H 0.14 0.99 8.06 -52.49 -0.42 0.56 16 42 H 0.14 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.16 1.33 6.32 -52.48 -0.33 1.00 16 45 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 46 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 47 H 0.39 9.40 6.11 -40.82 -0.25 9.16 16 48 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 394.86 15.07 5.95 5.95 Total: -1.00 -31.93 394.86 -9.06 -41.00 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: -7.57 Total: 8.57 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -2.09 Total: -0.59 kcal Atomic # 7 Polarization: -57.08 SS G_CDS: -0.22 Total: -57.30 kcal Atomic # 8 Polarization: -13.76 SS G_CDS: -0.11 Total: -13.86 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -31.93 -9.06 -41.00 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673930098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.682 kcal (2) G-P(sol) polarization free energy of solvation -31.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds