Wall clock time and date at job start Tue Mar 31 2020 17:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 110.89089 * 2 1 4 4 C 1.55129 * 110.90796 * 124.09469 * 2 1 3 5 5 N 1.47421 * 104.72458 * 155.27192 * 4 2 1 6 6 C 1.34784 * 125.64843 * 155.81647 * 5 4 2 7 7 O 1.21283 * 119.99667 * 359.71852 * 6 5 4 8 8 C 1.50693 * 119.99987 * 179.72186 * 6 5 4 9 9 C 1.53001 * 109.47176 * 180.02562 * 8 6 5 10 10 C 1.52999 * 109.47362 * 179.97438 * 9 8 6 11 11 O 1.42895 * 109.47302 * 179.97438 * 10 9 8 12 12 C 1.35912 * 117.00300 * 180.02562 * 11 10 9 13 13 C 1.39136 * 120.47341 * 180.02562 * 12 11 10 14 14 C 1.38541 * 118.37335 * 180.02562 * 13 12 11 15 15 C 1.38253 * 119.21782 * 359.97438 * 14 13 12 16 16 N 1.31847 * 120.89263 * 0.02562 * 15 14 13 17 17 C 1.31843 * 121.77386 * 359.69979 * 16 15 14 18 18 C 1.47018 * 108.70379 * 335.55582 * 5 4 2 19 19 C 1.54320 * 107.27210 * 1.28563 * 18 5 4 20 20 H 1.08996 * 110.72172 * 140.55457 * 19 18 5 21 21 N 1.46499 * 110.71965 * 263.65361 * 19 18 5 22 22 C 1.36941 * 119.99860 * 273.54368 * 21 19 18 23 23 H 1.08000 * 120.00140 * 0.02562 * 22 21 19 24 24 C 1.38816 * 120.00053 * 179.97438 * 22 21 19 25 25 N 1.31617 * 119.99678 * 0.02562 * 24 22 21 26 26 Si 1.86789 * 120.00040 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47415 * 359.97438 * 26 24 22 28 28 H 1.48503 * 109.47625 * 120.00266 * 26 24 22 29 29 H 1.48503 * 109.47330 * 239.99845 * 26 24 22 30 30 H 1.08998 * 109.46704 * 183.88260 * 1 2 3 31 31 H 1.08991 * 109.46921 * 303.87939 * 1 2 3 32 32 H 1.08994 * 109.46913 * 63.88086 * 1 2 3 33 33 H 1.09005 * 110.49746 * 36.43606 * 4 2 1 34 34 H 1.08997 * 110.34301 * 274.04013 * 4 2 1 35 35 H 1.09002 * 109.47106 * 299.99491 * 8 6 5 36 36 H 1.09003 * 109.47551 * 59.99749 * 8 6 5 37 37 H 1.09004 * 109.46992 * 299.99543 * 9 8 6 38 38 H 1.09003 * 109.47284 * 59.99343 * 9 8 6 39 39 H 1.08996 * 109.47024 * 300.00117 * 10 9 8 40 40 H 1.08997 * 109.46885 * 59.99795 * 10 9 8 41 41 H 1.07995 * 120.81595 * 0.02562 * 13 12 11 42 42 H 1.08000 * 120.38971 * 180.02562 * 14 13 12 43 43 H 1.08007 * 119.55194 * 179.97438 * 15 14 13 44 44 H 1.08008 * 119.65553 * 180.28832 * 17 16 15 45 45 H 1.09010 * 109.88204 * 120.70275 * 18 5 4 46 46 H 1.09004 * 109.88434 * 241.70985 * 18 5 4 47 47 H 0.97004 * 120.00265 * 93.54302 * 21 19 18 48 48 H 0.97006 * 120.00210 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4271 -1.2434 0.7729 6 6 4.4477 -1.5622 1.5935 7 8 4.3009 -1.5010 2.7958 8 6 5.7712 -1.9947 1.0170 9 6 6.7487 -2.2967 2.1546 10 6 8.0923 -2.7363 1.5694 11 8 9.0054 -3.0178 2.6319 12 6 10.2542 -3.4236 2.2810 13 6 11.2009 -3.7175 3.2574 14 6 12.4606 -4.1268 2.8509 15 6 12.7333 -4.2296 1.4995 16 7 11.8133 -3.9436 0.5995 17 6 10.6013 -3.5559 0.9447 18 6 3.4674 -1.2739 -0.6964 19 6 2.0862 -0.8075 -1.2025 20 1 2.1922 -0.1692 -2.0796 21 7 1.2283 -1.9569 -1.5009 22 6 1.2848 -2.5519 -2.7330 23 1 1.9621 -2.1741 -3.4846 24 6 0.4723 -3.6414 -3.0156 25 7 -0.3527 -4.1021 -2.0994 26 14 0.5498 -4.4534 -4.6959 27 1 1.5497 -3.7508 -5.5396 28 1 0.9450 -5.8764 -4.5404 29 1 -0.7842 -4.3783 -5.3441 30 1 -0.3633 -1.0253 0.0696 31 1 -0.3633 0.5728 0.8531 32 1 -0.3633 0.4524 -0.9227 33 1 1.4525 -1.6787 1.3982 34 1 2.1516 -0.1809 2.0859 35 1 5.6290 -2.8909 0.4132 36 1 6.1741 -1.1966 0.3935 37 1 6.8910 -1.4007 2.7589 38 1 6.3456 -3.0949 2.7779 39 1 7.9497 -3.6324 0.9654 40 1 8.4956 -1.9384 0.9460 41 1 10.9599 -3.6287 4.3063 42 1 13.2202 -4.3636 3.5812 43 1 13.7137 -4.5479 1.1766 44 1 9.8726 -3.3346 0.1788 45 1 4.2427 -0.5994 -1.0601 46 1 3.6678 -2.2885 -1.0408 47 1 0.6202 -2.2966 -0.8257 48 1 -0.9203 -4.8637 -2.2966 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673930098.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:48 Heat of formation + Delta-G solvation = -49.293481 kcal Electronic energy + Delta-G solvation = -27697.765449 eV Core-core repulsion = 23752.318762 eV Total energy + Delta-G solvation = -3945.446687 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.59010 -41.15418 -39.35793 -38.96740 -35.68368 -35.01197 -33.87224 -33.23440 -32.22081 -31.22960 -29.32979 -28.93686 -26.90693 -25.75982 -24.85250 -24.08259 -23.42834 -22.43853 -20.70261 -20.16744 -19.42738 -19.13899 -18.13610 -17.60866 -17.59402 -17.42234 -17.17308 -16.57400 -16.23892 -15.92371 -15.51393 -15.34576 -15.09748 -14.79557 -14.54007 -14.48545 -14.27154 -14.00279 -13.81614 -13.47795 -13.35826 -13.31155 -13.06603 -12.98083 -12.85524 -12.80229 -12.57529 -12.35700 -12.30564 -12.05490 -11.96013 -11.73741 -11.44797 -11.35636 -11.05180 -10.86086 -10.69099 -10.44952 -9.61847 -9.47647 -8.99098 -7.91087 -5.18953 0.13307 0.28516 1.50089 1.51493 1.60186 1.61085 1.84452 2.26049 2.58739 2.81225 3.40390 3.41582 3.54903 3.65742 3.75363 3.85325 3.91573 3.92009 3.94705 4.02555 4.07977 4.11144 4.23759 4.33474 4.36383 4.44510 4.52961 4.56363 4.64046 4.66433 4.67556 4.74664 4.89147 4.99180 4.99332 5.00583 5.03162 5.13898 5.15771 5.22779 5.30544 5.36456 5.55193 5.58052 5.61316 6.22308 6.30593 6.59486 6.96056 7.13973 7.38111 8.13301 8.35219 9.32463 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012171 B = 0.002201 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.082001 B =12716.678474 C =14482.476209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.098 4.098 3 H 0.111 0.889 4 C 0.113 3.887 5 N -0.610 5.610 6 C 0.519 3.481 7 O -0.593 6.593 8 C -0.124 4.124 9 C -0.094 4.094 10 C 0.058 3.942 11 O -0.324 6.324 12 C 0.067 3.933 13 C -0.122 4.122 14 C -0.123 4.123 15 C 0.047 3.953 16 N -0.480 5.480 17 C 0.002 3.998 18 C 0.080 3.920 19 C 0.159 3.841 20 H 0.083 0.917 21 N -0.724 5.724 22 C -0.230 4.230 23 H 0.085 0.915 24 C -0.076 4.076 25 N -0.970 5.970 26 Si 0.966 3.034 27 H -0.261 1.261 28 H -0.301 1.301 29 H -0.300 1.300 30 H 0.036 0.964 31 H 0.069 0.931 32 H 0.058 0.942 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.078 0.922 40 H 0.087 0.913 41 H 0.155 0.845 42 H 0.176 0.824 43 H 0.182 0.818 44 H 0.168 0.832 45 H 0.096 0.904 46 H 0.059 0.941 47 H 0.374 0.626 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.563 6.553 7.480 24.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.118 4.118 3 H 0.129 0.871 4 C -0.010 4.010 5 N -0.342 5.342 6 C 0.309 3.691 7 O -0.475 6.475 8 C -0.163 4.163 9 C -0.132 4.132 10 C -0.016 4.016 11 O -0.237 6.237 12 C 0.019 3.981 13 C -0.149 4.149 14 C -0.142 4.142 15 C -0.111 4.111 16 N -0.190 5.190 17 C -0.155 4.155 18 C -0.045 4.045 19 C 0.049 3.951 20 H 0.101 0.899 21 N -0.364 5.364 22 C -0.361 4.361 23 H 0.103 0.897 24 C -0.268 4.268 25 N -0.621 5.621 26 Si 0.797 3.203 27 H -0.185 1.185 28 H -0.229 1.229 29 H -0.228 1.228 30 H 0.055 0.945 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.060 0.940 34 H 0.093 0.907 35 H 0.126 0.874 36 H 0.145 0.855 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.096 0.904 40 H 0.105 0.895 41 H 0.172 0.828 42 H 0.193 0.807 43 H 0.199 0.801 44 H 0.185 0.815 45 H 0.114 0.886 46 H 0.077 0.923 47 H 0.207 0.793 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 22.687 6.507 7.248 24.690 hybrid contribution -1.133 -1.044 0.184 1.552 sum 21.554 5.463 7.432 23.445 Atomic orbital electron populations 1.21476 0.93767 1.01232 1.01935 1.22615 0.96569 0.99328 0.93293 0.87088 1.22251 0.82989 0.97581 0.98155 1.48588 1.11854 1.65596 1.08183 1.20878 0.86150 0.76305 0.85721 1.90663 1.84340 1.56021 1.16434 1.21486 0.90476 1.05080 0.99271 1.21089 0.91886 1.02630 0.97580 1.22957 0.88036 1.01840 0.88786 1.86049 1.19709 1.81307 1.36590 1.20298 0.86004 0.96821 0.94958 1.21347 0.92509 1.00693 1.00341 1.22399 0.96559 0.97241 0.97999 1.23221 0.99520 0.98645 0.89710 1.67552 1.01645 1.09785 1.39995 1.23154 0.95505 1.02886 0.93989 1.23111 1.01245 1.02016 0.78107 1.21506 0.88607 0.88716 0.96234 0.89905 1.42642 1.46211 1.34060 1.13509 1.19689 1.16788 1.08236 0.91431 0.89678 1.25488 0.99850 1.00509 1.00998 1.69825 1.29069 1.28169 1.35074 0.85170 0.77010 0.77774 0.80385 1.18469 1.22930 1.22772 0.94510 0.91212 0.92341 0.94008 0.90743 0.87409 0.85525 0.90969 0.92110 0.90405 0.89467 0.82779 0.80654 0.80072 0.81471 0.88643 0.92298 0.79258 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.75 8.85 71.98 0.64 -3.11 16 2 C -0.10 -2.76 3.53 -9.32 -0.03 -2.79 16 3 H 0.11 2.49 8.14 -2.39 -0.02 2.47 16 4 C 0.11 3.57 6.36 86.93 0.55 4.12 16 5 N -0.61 -18.62 3.32 -811.35 -2.70 -21.32 16 6 C 0.52 15.80 7.85 87.65 0.69 16.49 16 7 O -0.59 -22.46 16.24 -3.04 -0.05 -22.51 16 8 C -0.12 -2.53 4.89 29.85 0.15 -2.39 16 9 C -0.09 -1.96 4.87 30.59 0.15 -1.81 16 10 C 0.06 0.97 4.75 71.98 0.34 1.31 16 11 O -0.32 -6.75 10.15 -92.56 -0.94 -7.69 16 12 C 0.07 1.29 6.71 22.60 0.15 1.44 16 13 C -0.12 -1.91 10.13 22.56 0.23 -1.68 16 14 C -0.12 -1.43 10.11 22.35 0.23 -1.20 16 15 C 0.05 0.68 11.18 84.69 0.95 1.62 16 16 N -0.48 -9.74 10.36 -195.43 -2.02 -11.77 16 17 C 0.00 0.03 10.22 84.80 0.87 0.90 16 18 C 0.08 2.30 6.22 86.73 0.54 2.84 16 19 C 0.16 5.23 3.36 46.18 0.16 5.39 16 20 H 0.08 2.55 8.12 -2.39 -0.02 2.53 16 21 N -0.72 -32.33 4.62 -317.33 -1.47 -33.79 16 22 C -0.23 -11.48 9.98 84.03 0.84 -10.64 16 23 H 0.09 3.97 7.83 -2.91 -0.02 3.95 16 24 C -0.08 -4.13 5.50 84.86 0.47 -3.67 16 25 N -0.97 -57.33 13.06 21.65 0.28 -57.05 16 26 Si 0.97 44.02 29.55 68.60 2.03 46.05 16 27 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 28 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 29 H -0.30 -13.95 7.11 99.48 0.71 -13.24 16 30 H 0.04 1.33 6.39 -2.39 -0.02 1.32 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.54 7.99 -2.38 -0.02 1.52 16 34 H 0.07 2.26 8.03 -2.39 -0.02 2.24 16 35 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 36 H 0.13 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.07 1.64 8.10 -2.38 -0.02 1.62 16 38 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 39 H 0.08 1.14 7.67 -2.39 -0.02 1.12 16 40 H 0.09 1.09 7.69 -2.39 -0.02 1.07 16 41 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 42 H 0.18 0.73 8.06 -2.91 -0.02 0.71 16 43 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 44 H 0.17 2.63 6.32 -2.91 -0.02 2.62 16 45 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 46 H 0.06 1.95 8.05 -2.38 -0.02 1.93 16 47 H 0.37 18.69 6.11 -92.71 -0.57 18.12 16 48 H 0.25 14.38 8.31 -92.70 -0.77 13.61 16 Total: -1.00 -71.51 394.86 2.42 -69.09 By element: Atomic # 1 Polarization: 31.77 SS G_CDS: 0.39 Total: 32.16 kcal Atomic # 6 Polarization: -0.07 SS G_CDS: 6.90 Total: 6.84 kcal Atomic # 7 Polarization: -118.03 SS G_CDS: -5.90 Total: -123.93 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -0.99 Total: -30.20 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -71.51 2.42 -69.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673930098.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.794 kcal (2) G-P(sol) polarization free energy of solvation -71.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds