Wall clock time and date at job start Tue Mar 31 2020 17:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64158 * 2 1 4 4 C 1.54316 * 110.87319 * 236.74680 * 2 1 3 5 5 N 1.47020 * 107.27568 * 219.37341 * 4 2 1 6 6 C 1.34776 * 125.65281 * 178.97789 * 5 4 2 7 7 O 1.21285 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47186 * 180.02562 * 8 6 5 10 10 C 1.53011 * 109.47076 * 179.97438 * 9 8 6 11 11 O 1.42897 * 109.46812 * 179.97438 * 10 9 8 12 12 C 1.35915 * 116.99431 * 179.97438 * 11 10 9 13 13 C 1.39141 * 120.46878 * 180.02562 * 12 11 10 14 14 C 1.38535 * 118.37058 * 179.97438 * 13 12 11 15 15 C 1.38253 * 119.22462 * 0.02562 * 14 13 12 16 16 N 1.31850 * 120.88349 * 359.97438 * 15 14 13 17 17 C 1.31844 * 121.78179 * 359.70760 * 16 15 14 18 18 C 1.47422 * 108.70191 * 358.94070 * 5 4 2 19 19 C 1.54917 * 104.83074 * 24.12901 * 18 5 4 20 20 H 1.08996 * 111.00376 * 204.87436 * 19 18 5 21 21 N 1.46501 * 111.00397 * 81.06403 * 19 18 5 22 22 C 1.36932 * 120.00032 * 86.45261 * 21 19 18 23 23 H 1.08003 * 120.00163 * 0.02562 * 22 21 19 24 24 C 1.38820 * 120.00065 * 179.97438 * 22 21 19 25 25 N 1.31612 * 119.99791 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00026 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47393 * 89.99775 * 26 24 22 28 28 H 1.48501 * 109.47208 * 210.00181 * 26 24 22 29 29 H 1.48504 * 109.47104 * 330.00146 * 26 24 22 30 30 H 1.09004 * 109.47379 * 296.86359 * 1 2 3 31 31 H 1.08996 * 109.47147 * 56.85706 * 1 2 3 32 32 H 1.09001 * 109.47442 * 176.86442 * 1 2 3 33 33 H 1.09000 * 109.88340 * 338.79687 * 4 2 1 34 34 H 1.09005 * 109.88355 * 99.80448 * 4 2 1 35 35 H 1.09004 * 109.47135 * 299.99842 * 8 6 5 36 36 H 1.08993 * 109.47035 * 59.99497 * 8 6 5 37 37 H 1.08995 * 109.47224 * 299.99440 * 9 8 6 38 38 H 1.08993 * 109.47602 * 59.99773 * 9 8 6 39 39 H 1.08995 * 109.46730 * 299.99856 * 10 9 8 40 40 H 1.08993 * 109.46997 * 59.99517 * 10 9 8 41 41 H 1.08001 * 120.81536 * 0.02831 * 13 12 11 42 42 H 1.08004 * 120.38860 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.55865 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.66014 * 180.28979 * 17 16 15 45 45 H 1.08998 * 110.36873 * 265.28987 * 18 5 4 46 46 H 1.09005 * 110.36491 * 142.96394 * 18 5 4 47 47 H 0.96995 * 119.99785 * 266.45481 * 21 19 18 48 48 H 0.97003 * 119.99930 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7906 -1.2058 5 7 3.2494 -1.5471 -0.7352 6 6 4.0004 -2.3786 -1.4842 7 8 3.7295 -2.5529 -2.6535 8 6 5.1767 -3.0918 -0.8689 9 6 5.8532 -3.9662 -1.9265 10 6 7.0479 -4.6899 -1.3019 11 8 7.6793 -5.5069 -2.2896 12 6 8.7660 -6.2220 -1.8959 13 6 9.4368 -7.0410 -2.7989 14 6 10.5395 -7.7500 -2.3512 15 6 10.9341 -7.6223 -1.0323 16 7 10.2762 -6.8373 -0.2020 17 6 9.2259 -6.1410 -0.5898 18 6 3.4652 -1.2447 0.6914 19 6 2.0789 -0.7933 1.2152 20 1 2.1819 -0.1495 2.0886 21 7 1.2294 -1.9486 1.5153 22 6 1.3000 -2.5498 2.7435 23 1 1.9817 -2.1721 3.4912 24 6 0.4947 -3.6441 3.0280 25 7 -0.3364 -4.1040 2.1170 26 14 0.5905 -4.4638 4.7038 27 1 -0.3819 -3.8226 5.6249 28 1 0.2668 -5.9067 4.5683 29 1 1.9631 -4.3137 5.2505 30 1 -0.3634 0.4644 0.9168 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0562 33 1 1.3190 -1.4773 -1.5769 34 1 2.3750 -0.1018 -1.9973 35 1 5.8905 -2.3585 -0.4935 36 1 4.8321 -3.7177 -0.0458 37 1 5.1397 -4.6995 -2.3022 38 1 6.1979 -3.3400 -2.7494 39 1 7.7612 -3.9562 -0.9265 40 1 6.7036 -5.3160 -0.4788 41 1 9.1063 -7.1213 -3.8240 42 1 11.0841 -8.3956 -3.0243 43 1 11.7933 -8.1722 -0.6776 44 1 8.7153 -5.5050 0.1181 45 1 4.1929 -0.4409 0.8030 46 1 3.7992 -2.1364 1.2219 47 1 0.6169 -2.2875 0.8439 48 1 -0.8989 -4.8689 2.3157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673930099.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:51 Heat of formation + Delta-G solvation = -29.266156 kcal Electronic energy + Delta-G solvation = -27983.350681 eV Core-core repulsion = 24038.772444 eV Total energy + Delta-G solvation = -3944.578237 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.85828 -39.83969 -38.50421 -37.65869 -34.01770 -33.89866 -32.60586 -32.34277 -30.58913 -30.45782 -28.02854 -27.70844 -25.77547 -24.11151 -23.89972 -23.27877 -22.16574 -21.44790 -19.28566 -19.05508 -18.35846 -17.54753 -17.09589 -16.86774 -16.68999 -16.37879 -15.93251 -15.30706 -14.78740 -14.67505 -14.51398 -14.09620 -13.92847 -13.73496 -13.35166 -13.24382 -13.08903 -12.92662 -12.61184 -12.47414 -12.31355 -12.09035 -11.98032 -11.68399 -11.57154 -11.41281 -11.15263 -10.97042 -10.84044 -10.77266 -10.51020 -10.32029 -10.02507 -9.97844 -9.74044 -9.71177 -9.57312 -9.07943 -8.74249 -8.24930 -7.08119 -5.87656 -3.17802 0.80318 0.99023 2.71866 2.94099 3.36216 3.41304 3.41696 3.43985 3.50342 4.19569 4.35990 4.48385 4.51553 4.61343 4.70353 4.72612 4.88308 4.90210 5.02800 5.12040 5.17948 5.21804 5.26294 5.30377 5.32053 5.50849 5.56681 5.58258 5.66869 5.73232 5.77116 5.88363 5.95107 5.96737 6.10823 6.14864 6.17640 6.23747 6.31016 6.33535 6.46275 6.58753 6.73313 6.88145 6.97112 7.59103 7.65259 7.90186 8.30049 8.47724 9.41985 9.97490 10.32022 11.34288 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.002530 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.308549 B =11065.865532 C =12996.144789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.113 4.113 3 H 0.079 0.921 4 C 0.117 3.883 5 N -0.602 5.602 6 C 0.530 3.470 7 O -0.555 6.555 8 C -0.133 4.133 9 C -0.101 4.101 10 C 0.056 3.944 11 O -0.306 6.306 12 C 0.085 3.915 13 C -0.112 4.112 14 C -0.133 4.133 15 C 0.054 3.946 16 N -0.450 5.450 17 C 0.016 3.984 18 C 0.067 3.933 19 C 0.171 3.829 20 H 0.071 0.929 21 N -0.710 5.710 22 C -0.248 4.248 23 H 0.072 0.928 24 C -0.008 4.008 25 N -0.928 5.928 26 Si 0.906 3.094 27 H -0.289 1.289 28 H -0.292 1.292 29 H -0.281 1.281 30 H 0.060 0.940 31 H 0.044 0.956 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.101 0.899 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.066 0.934 40 H 0.069 0.931 41 H 0.143 0.857 42 H 0.141 0.859 43 H 0.157 0.843 44 H 0.160 0.840 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.387 0.613 48 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.691 1.147 -7.632 19.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.133 4.133 3 H 0.097 0.903 4 C -0.006 4.006 5 N -0.335 5.335 6 C 0.319 3.681 7 O -0.434 6.434 8 C -0.173 4.173 9 C -0.139 4.139 10 C -0.019 4.019 11 O -0.218 6.218 12 C 0.037 3.963 13 C -0.139 4.139 14 C -0.152 4.152 15 C -0.104 4.104 16 N -0.159 5.159 17 C -0.142 4.142 18 C -0.059 4.059 19 C 0.058 3.942 20 H 0.088 0.912 21 N -0.351 5.351 22 C -0.379 4.379 23 H 0.090 0.910 24 C -0.205 4.205 25 N -0.575 5.575 26 Si 0.737 3.263 27 H -0.216 1.216 28 H -0.218 1.218 29 H -0.207 1.207 30 H 0.079 0.921 31 H 0.063 0.937 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.076 0.924 35 H 0.111 0.889 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.160 0.840 42 H 0.159 0.841 43 H 0.174 0.826 44 H 0.177 0.823 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.223 0.777 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 17.747 1.017 -7.441 19.271 hybrid contribution -0.431 -0.694 0.140 0.829 sum 17.316 0.323 -7.301 18.795 Atomic orbital electron populations 1.21602 0.93476 1.02984 1.00927 1.22489 0.97098 0.98512 0.95208 0.90260 1.21925 0.87859 0.94383 0.96420 1.48325 1.29301 1.43955 1.11876 1.20029 0.83583 0.78650 0.85882 1.90676 1.71832 1.64227 1.16710 1.21463 0.96312 0.99763 0.99714 1.21211 0.95277 0.99056 0.98325 1.22976 0.94942 0.93143 0.90856 1.86094 1.39751 1.56671 1.39288 1.20114 0.88593 0.93268 0.94301 1.20990 0.95833 0.96779 1.00283 1.22025 0.96445 0.99312 0.97455 1.22670 0.99820 0.97604 0.90278 1.67536 1.05915 1.05003 1.37485 1.23002 0.96183 1.01328 0.93726 1.23428 1.01280 1.00715 0.80470 1.21362 0.88609 0.89929 0.94269 0.91157 1.42388 1.45372 1.32255 1.15050 1.19206 1.18685 1.09144 0.90838 0.91014 1.24757 0.98938 0.98863 0.97913 1.69658 1.27248 1.27187 1.33410 0.86215 0.77592 0.78751 0.83719 1.21646 1.21792 1.20694 0.92106 0.93672 0.91262 0.91512 0.92414 0.88929 0.88095 0.89802 0.90099 0.91549 0.91271 0.83964 0.84113 0.82584 0.82327 0.92605 0.90108 0.77712 0.93345 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.03 8.72 37.16 0.32 -1.70 16 2 C -0.11 -1.68 3.41 -88.79 -0.30 -1.99 16 3 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 4 C 0.12 1.88 6.46 -3.07 -0.02 1.86 16 5 N -0.60 -9.94 3.33 -170.52 -0.57 -10.50 16 6 C 0.53 8.91 7.85 -10.99 -0.09 8.83 16 7 O -0.56 -11.09 16.31 5.55 0.09 -11.00 16 8 C -0.13 -1.66 4.71 -27.89 -0.13 -1.79 16 9 C -0.10 -1.21 4.87 -26.73 -0.13 -1.34 16 10 C 0.06 0.56 4.75 37.16 0.18 0.74 16 11 O -0.31 -3.57 10.15 -19.47 -0.20 -3.77 16 12 C 0.09 0.93 6.71 -39.08 -0.26 0.67 16 13 C -0.11 -1.04 10.13 -39.14 -0.40 -1.43 16 14 C -0.13 -1.01 10.11 -39.47 -0.40 -1.41 16 15 C 0.05 0.48 11.18 -17.54 -0.20 0.28 16 16 N -0.45 -5.14 10.36 -13.13 -0.14 -5.27 16 17 C 0.02 0.17 10.22 -17.38 -0.18 -0.01 16 18 C 0.07 1.04 6.38 -2.53 -0.02 1.02 16 19 C 0.17 2.97 3.44 -65.78 -0.23 2.74 16 20 H 0.07 1.19 8.13 -51.93 -0.42 0.76 16 21 N -0.71 -16.04 4.74 -51.34 -0.24 -16.29 16 22 C -0.25 -6.30 9.98 -15.06 -0.15 -6.45 16 23 H 0.07 1.75 7.83 -52.48 -0.41 1.34 16 24 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 25 N -0.93 -26.86 13.06 55.49 0.72 -26.14 16 26 Si 0.91 21.35 29.55 -169.99 -5.02 16.32 16 27 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.07 1.26 6.37 -51.93 -0.33 0.93 16 33 H 0.07 1.21 7.78 -51.93 -0.40 0.80 16 34 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.10 1.27 7.85 -51.93 -0.41 0.87 16 37 H 0.08 1.16 8.10 -51.93 -0.42 0.74 16 38 H 0.08 1.01 8.10 -51.93 -0.42 0.59 16 39 H 0.07 0.55 7.67 -51.93 -0.40 0.15 16 40 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 41 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.14 0.63 8.06 -52.48 -0.42 0.21 16 43 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.16 1.47 6.32 -52.49 -0.33 1.14 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.08 1.34 7.48 -51.93 -0.39 0.95 16 47 H 0.39 9.62 6.09 -40.82 -0.25 9.37 16 48 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 LS Contribution 393.96 15.07 5.94 5.94 Total: -1.00 -32.37 393.96 -9.03 -41.40 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -7.52 Total: 9.60 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.09 Total: -0.29 kcal Atomic # 7 Polarization: -57.98 SS G_CDS: -0.22 Total: -58.20 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.11 Total: -14.77 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.37 -9.03 -41.40 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673930099.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.131 kcal (2) G-P(sol) polarization free energy of solvation -32.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds