Wall clock time and date at job start Tue Mar 31 2020 17:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.64158 * 2 1 4 4 C 1.54316 * 110.87319 * 236.74680 * 2 1 3 5 5 N 1.47020 * 107.27568 * 219.37341 * 4 2 1 6 6 C 1.34776 * 125.65281 * 178.97789 * 5 4 2 7 7 O 1.21285 * 119.99841 * 359.97438 * 6 5 4 8 8 C 1.50699 * 120.00365 * 179.97438 * 6 5 4 9 9 C 1.52995 * 109.47186 * 180.02562 * 8 6 5 10 10 C 1.53011 * 109.47076 * 179.97438 * 9 8 6 11 11 O 1.42897 * 109.46812 * 179.97438 * 10 9 8 12 12 C 1.35915 * 116.99431 * 179.97438 * 11 10 9 13 13 C 1.39141 * 120.46878 * 180.02562 * 12 11 10 14 14 C 1.38535 * 118.37058 * 179.97438 * 13 12 11 15 15 C 1.38253 * 119.22462 * 0.02562 * 14 13 12 16 16 N 1.31850 * 120.88349 * 359.97438 * 15 14 13 17 17 C 1.31844 * 121.78179 * 359.70760 * 16 15 14 18 18 C 1.47422 * 108.70191 * 358.94070 * 5 4 2 19 19 C 1.54917 * 104.83074 * 24.12901 * 18 5 4 20 20 H 1.08996 * 111.00376 * 204.87436 * 19 18 5 21 21 N 1.46501 * 111.00397 * 81.06403 * 19 18 5 22 22 C 1.36932 * 120.00032 * 86.45261 * 21 19 18 23 23 H 1.08003 * 120.00163 * 0.02562 * 22 21 19 24 24 C 1.38820 * 120.00065 * 179.97438 * 22 21 19 25 25 N 1.31612 * 119.99791 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 120.00026 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47393 * 89.99775 * 26 24 22 28 28 H 1.48501 * 109.47208 * 210.00181 * 26 24 22 29 29 H 1.48504 * 109.47104 * 330.00146 * 26 24 22 30 30 H 1.09004 * 109.47379 * 296.86359 * 1 2 3 31 31 H 1.08996 * 109.47147 * 56.85706 * 1 2 3 32 32 H 1.09001 * 109.47442 * 176.86442 * 1 2 3 33 33 H 1.09000 * 109.88340 * 338.79687 * 4 2 1 34 34 H 1.09005 * 109.88355 * 99.80448 * 4 2 1 35 35 H 1.09004 * 109.47135 * 299.99842 * 8 6 5 36 36 H 1.08993 * 109.47035 * 59.99497 * 8 6 5 37 37 H 1.08995 * 109.47224 * 299.99440 * 9 8 6 38 38 H 1.08993 * 109.47602 * 59.99773 * 9 8 6 39 39 H 1.08995 * 109.46730 * 299.99856 * 10 9 8 40 40 H 1.08993 * 109.46997 * 59.99517 * 10 9 8 41 41 H 1.08001 * 120.81536 * 0.02831 * 13 12 11 42 42 H 1.08004 * 120.38860 * 179.97438 * 14 13 12 43 43 H 1.08002 * 119.55865 * 180.02562 * 15 14 13 44 44 H 1.08001 * 119.66014 * 180.28979 * 17 16 15 45 45 H 1.08998 * 110.36873 * 265.28987 * 18 5 4 46 46 H 1.09005 * 110.36491 * 142.96394 * 18 5 4 47 47 H 0.96995 * 119.99785 * 266.45481 * 21 19 18 48 48 H 0.97003 * 119.99930 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0798 -0.7906 -1.2058 5 7 3.2494 -1.5471 -0.7352 6 6 4.0004 -2.3786 -1.4842 7 8 3.7295 -2.5529 -2.6535 8 6 5.1767 -3.0918 -0.8689 9 6 5.8532 -3.9662 -1.9265 10 6 7.0479 -4.6899 -1.3019 11 8 7.6793 -5.5069 -2.2896 12 6 8.7660 -6.2220 -1.8959 13 6 9.4368 -7.0410 -2.7989 14 6 10.5395 -7.7500 -2.3512 15 6 10.9341 -7.6223 -1.0323 16 7 10.2762 -6.8373 -0.2020 17 6 9.2259 -6.1410 -0.5898 18 6 3.4652 -1.2447 0.6914 19 6 2.0789 -0.7933 1.2152 20 1 2.1819 -0.1495 2.0886 21 7 1.2294 -1.9486 1.5153 22 6 1.3000 -2.5498 2.7435 23 1 1.9817 -2.1721 3.4912 24 6 0.4947 -3.6441 3.0280 25 7 -0.3364 -4.1040 2.1170 26 14 0.5905 -4.4638 4.7038 27 1 -0.3819 -3.8226 5.6249 28 1 0.2668 -5.9067 4.5683 29 1 1.9631 -4.3137 5.2505 30 1 -0.3634 0.4644 0.9168 31 1 -0.3633 0.5618 -0.8604 32 1 -0.3634 -1.0261 -0.0562 33 1 1.3190 -1.4773 -1.5769 34 1 2.3750 -0.1018 -1.9973 35 1 5.8905 -2.3585 -0.4935 36 1 4.8321 -3.7177 -0.0458 37 1 5.1397 -4.6995 -2.3022 38 1 6.1979 -3.3400 -2.7494 39 1 7.7612 -3.9562 -0.9265 40 1 6.7036 -5.3160 -0.4788 41 1 9.1063 -7.1213 -3.8240 42 1 11.0841 -8.3956 -3.0243 43 1 11.7933 -8.1722 -0.6776 44 1 8.7153 -5.5050 0.1181 45 1 4.1929 -0.4409 0.8030 46 1 3.7992 -2.1364 1.2219 47 1 0.6169 -2.2875 0.8439 48 1 -0.8989 -4.8689 2.3157 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673930099.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:51 Heat of formation + Delta-G solvation = -49.919232 kcal Electronic energy + Delta-G solvation = -27984.246266 eV Core-core repulsion = 24038.772444 eV Total energy + Delta-G solvation = -3945.473821 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.59732 -41.13961 -39.35896 -38.95511 -35.64074 -35.01880 -33.86252 -33.23962 -32.23653 -31.23647 -29.34501 -28.94121 -26.90385 -25.78072 -24.86509 -24.08290 -23.36452 -22.45500 -20.64276 -20.23696 -19.39001 -19.12948 -18.12165 -17.63722 -17.59871 -17.42070 -17.22122 -16.64554 -16.17092 -15.93006 -15.50690 -15.34354 -15.08132 -14.71630 -14.62068 -14.42902 -14.21283 -14.01539 -13.76463 -13.55129 -13.45212 -13.25184 -13.04668 -12.98632 -12.84023 -12.80559 -12.58217 -12.35923 -12.26115 -12.11595 -11.94991 -11.75425 -11.47042 -11.33554 -11.03432 -10.85607 -10.69689 -10.45732 -9.63344 -9.48542 -8.93113 -7.90900 -5.18491 0.12575 0.27859 1.50380 1.50534 1.58634 1.62943 1.85744 2.27954 2.58516 2.80564 3.39939 3.43860 3.54187 3.65291 3.75744 3.83787 3.91098 3.91263 3.96711 4.01741 4.07430 4.13608 4.23188 4.31875 4.36078 4.44634 4.52203 4.56666 4.63424 4.65836 4.70269 4.81562 4.87552 4.97751 4.98798 5.00395 5.02817 5.13036 5.14794 5.22492 5.28048 5.43897 5.54191 5.57477 5.60932 6.21181 6.30342 6.60998 6.95297 7.16917 7.37751 8.14274 8.35748 9.32655 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.002530 C = 0.002154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.308549 B =11065.865532 C =12996.144789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.098 4.098 3 H 0.119 0.881 4 C 0.114 3.886 5 N -0.607 5.607 6 C 0.518 3.482 7 O -0.596 6.596 8 C -0.123 4.123 9 C -0.093 4.093 10 C 0.060 3.940 11 O -0.324 6.324 12 C 0.066 3.934 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.047 3.953 16 N -0.480 5.480 17 C 0.002 3.998 18 C 0.076 3.924 19 C 0.156 3.844 20 H 0.086 0.914 21 N -0.723 5.723 22 C -0.229 4.229 23 H 0.086 0.914 24 C -0.077 4.077 25 N -0.972 5.972 26 Si 0.966 3.034 27 H -0.291 1.291 28 H -0.306 1.306 29 H -0.264 1.264 30 H 0.058 0.942 31 H 0.069 0.931 32 H 0.030 0.970 33 H 0.034 0.966 34 H 0.073 0.927 35 H 0.128 0.872 36 H 0.101 0.899 37 H 0.056 0.944 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.155 0.845 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.167 0.833 45 H 0.099 0.901 46 H 0.070 0.930 47 H 0.372 0.628 48 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.557 2.423 -6.899 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.118 4.118 3 H 0.137 0.863 4 C -0.009 4.009 5 N -0.338 5.338 6 C 0.308 3.692 7 O -0.478 6.478 8 C -0.162 4.162 9 C -0.131 4.131 10 C -0.015 4.015 11 O -0.237 6.237 12 C 0.018 3.982 13 C -0.149 4.149 14 C -0.142 4.142 15 C -0.111 4.111 16 N -0.189 5.189 17 C -0.156 4.156 18 C -0.049 4.049 19 C 0.046 3.954 20 H 0.104 0.896 21 N -0.363 5.363 22 C -0.361 4.361 23 H 0.104 0.896 24 C -0.269 4.269 25 N -0.623 5.623 26 Si 0.796 3.204 27 H -0.218 1.218 28 H -0.234 1.234 29 H -0.189 1.189 30 H 0.077 0.923 31 H 0.088 0.912 32 H 0.049 0.951 33 H 0.053 0.947 34 H 0.091 0.909 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.108 0.892 40 H 0.092 0.908 41 H 0.172 0.828 42 H 0.194 0.806 43 H 0.200 0.800 44 H 0.184 0.816 45 H 0.117 0.883 46 H 0.089 0.911 47 H 0.205 0.795 48 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 20.665 2.355 -6.675 21.843 hybrid contribution -1.259 -1.031 -0.168 1.636 sum 19.406 1.324 -6.842 20.619 Atomic orbital electron populations 1.21533 0.94158 1.00896 1.01938 1.22479 0.96442 0.99810 0.93032 0.86290 1.21955 0.87276 0.94112 0.97517 1.48489 1.29136 1.43839 1.12372 1.20823 0.84420 0.78347 0.85569 1.90652 1.73107 1.65432 1.18614 1.21459 0.95307 1.00171 0.99275 1.21080 0.95469 0.98381 0.98204 1.22941 0.94588 0.93568 0.90400 1.86051 1.40358 1.57254 1.40000 1.20320 0.88815 0.94121 0.94924 1.21352 0.96201 0.96539 1.00795 1.22404 0.95600 0.98629 0.97518 1.23235 1.00151 0.96968 0.90700 1.67550 1.06595 1.06108 1.38677 1.23138 0.96530 1.01890 0.93998 1.23362 1.00571 1.01597 0.79335 1.21713 0.88989 0.88693 0.95989 0.89648 1.42583 1.46163 1.33620 1.13896 1.19656 1.16811 1.07873 0.91751 0.89608 1.25488 0.99867 1.00533 1.00967 1.69829 1.29128 1.27965 1.35383 0.85243 0.78126 0.76780 0.80234 1.21839 1.23368 1.18854 0.92271 0.91225 0.95061 0.94699 0.90873 0.85370 0.88036 0.92525 0.90755 0.89217 0.90759 0.82777 0.80561 0.79964 0.81578 0.88293 0.91137 0.79470 0.94461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.81 8.72 71.98 0.63 -3.19 16 2 C -0.10 -2.69 3.41 -9.61 -0.03 -2.72 16 3 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 4 C 0.11 3.57 6.46 86.73 0.56 4.13 16 5 N -0.61 -19.22 3.33 -811.79 -2.70 -21.92 16 6 C 0.52 17.21 7.85 87.66 0.69 17.90 16 7 O -0.60 -24.34 16.31 -3.05 -0.05 -24.39 16 8 C -0.12 -2.91 4.71 29.85 0.14 -2.77 16 9 C -0.09 -2.23 4.87 30.60 0.15 -2.08 16 10 C 0.06 1.15 4.75 71.99 0.34 1.49 16 11 O -0.32 -7.49 10.15 -92.59 -0.94 -8.43 16 12 C 0.07 1.40 6.71 22.60 0.15 1.55 16 13 C -0.12 -2.10 10.13 22.56 0.23 -1.87 16 14 C -0.12 -1.58 10.11 22.34 0.23 -1.35 16 15 C 0.05 0.74 11.18 84.69 0.95 1.69 16 16 N -0.48 -10.42 10.36 -195.44 -2.02 -12.44 16 17 C 0.00 0.03 10.22 84.80 0.87 0.90 16 18 C 0.08 2.13 6.38 86.86 0.55 2.69 16 19 C 0.16 5.08 3.44 46.39 0.16 5.24 16 20 H 0.09 2.57 8.13 -2.39 -0.02 2.55 16 21 N -0.72 -32.56 4.74 -316.36 -1.50 -34.06 16 22 C -0.23 -11.49 9.98 84.04 0.84 -10.65 16 23 H 0.09 3.99 7.83 -2.91 -0.02 3.97 16 24 C -0.08 -4.18 5.50 84.86 0.47 -3.71 16 25 N -0.97 -58.28 13.06 21.65 0.28 -57.99 16 26 Si 0.97 44.30 29.55 68.60 2.03 46.33 16 27 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 28 H -0.31 -14.64 7.11 99.48 0.71 -13.94 16 29 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 30 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.03 1.17 6.37 -2.39 -0.02 1.15 16 33 H 0.03 1.30 7.78 -2.39 -0.02 1.28 16 34 H 0.07 2.06 8.14 -2.38 -0.02 2.04 16 35 H 0.13 2.13 8.14 -2.38 -0.02 2.11 16 36 H 0.10 2.45 7.85 -2.39 -0.02 2.43 16 37 H 0.06 1.64 8.10 -2.39 -0.02 1.62 16 38 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 39 H 0.09 1.30 7.67 -2.39 -0.02 1.29 16 40 H 0.07 1.34 7.69 -2.39 -0.02 1.32 16 41 H 0.15 2.15 8.06 -2.91 -0.02 2.13 16 42 H 0.18 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 44 H 0.17 2.96 6.32 -2.91 -0.02 2.94 16 45 H 0.10 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.07 2.15 7.48 -2.38 -0.02 2.13 16 47 H 0.37 19.05 6.09 -92.71 -0.56 18.49 16 48 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 Total: -1.00 -73.50 393.96 2.40 -71.10 By element: Atomic # 1 Polarization: 34.18 SS G_CDS: 0.39 Total: 34.57 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.91 Total: 7.23 kcal Atomic # 7 Polarization: -120.47 SS G_CDS: -5.94 Total: -126.41 kcal Atomic # 8 Polarization: -31.83 SS G_CDS: -0.99 Total: -32.82 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -73.50 2.40 -71.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673930099.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.179 kcal (2) G-P(sol) polarization free energy of solvation -73.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.098 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds