Wall clock time and date at job start Tue Mar 31 2020 18:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47054 * 2 1 4 4 C 1.50694 * 109.47331 * 119.99838 * 2 1 3 5 5 O 1.21279 * 120.00123 * 113.68434 * 4 2 1 6 6 N 1.34780 * 120.00245 * 293.68877 * 4 2 1 7 7 C 1.46926 * 120.62652 * 356.38174 * 6 4 2 8 8 C 1.53189 * 108.77422 * 233.58570 * 7 6 4 9 9 C 1.53036 * 109.31752 * 305.36620 * 8 7 6 10 10 O 1.42903 * 109.46029 * 301.36166 * 9 8 7 11 11 C 1.53000 * 109.46739 * 181.38434 * 9 8 7 12 12 N 1.46495 * 109.47471 * 184.99803 * 11 9 8 13 13 C 1.36939 * 119.99912 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00045 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99693 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99908 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99673 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47239 * 90.00586 * 17 15 13 19 19 H 1.48503 * 109.47286 * 210.00385 * 17 15 13 20 20 H 1.48498 * 109.47533 * 330.00254 * 17 15 13 21 21 C 1.53045 * 109.53744 * 61.36198 * 9 8 7 22 22 C 1.46924 * 120.63581 * 176.35793 * 6 4 2 23 23 C 1.50705 * 109.47161 * 239.99965 * 2 1 3 24 24 C 1.38666 * 120.41860 * 119.99628 * 23 2 1 25 25 C 1.38633 * 118.41980 * 179.97438 * 24 23 2 26 26 C 1.38221 * 119.16088 * 0.02562 * 25 24 23 27 27 N 1.31861 * 120.76364 * 359.97438 * 26 25 24 28 28 C 1.31882 * 121.72321 * 359.69746 * 27 26 25 29 29 H 1.08998 * 109.47223 * 67.02604 * 1 2 3 30 30 H 1.09004 * 109.47052 * 187.02311 * 1 2 3 31 31 H 1.09002 * 109.47285 * 307.02321 * 1 2 3 32 32 H 1.09003 * 109.58574 * 113.80461 * 7 6 4 33 33 H 1.09000 * 109.58948 * 353.37373 * 7 6 4 34 34 H 1.09004 * 109.50170 * 185.41159 * 8 7 6 35 35 H 1.09004 * 109.49736 * 65.31958 * 8 7 6 36 36 H 0.96700 * 114.00097 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.46720 * 305.00177 * 11 9 8 38 38 H 1.09004 * 109.46598 * 64.99599 * 11 9 8 39 39 H 0.97001 * 119.99848 * 0.02562 * 12 11 9 40 40 H 0.97005 * 119.99570 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.49405 * 58.58929 * 21 9 8 42 42 H 1.09000 * 109.50014 * 178.69031 * 21 9 8 43 43 H 1.08994 * 109.59081 * 246.20564 * 22 6 4 44 44 H 1.09005 * 109.58669 * 6.62742 * 22 6 4 45 45 H 1.08002 * 120.78977 * 359.97438 * 24 23 2 46 46 H 1.07998 * 120.41992 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.61848 * 179.97438 * 26 25 24 48 48 H 1.08005 * 119.61565 * 180.30690 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.6323 -1.7589 1.1229 6 7 1.8149 -0.1805 2.4505 7 6 1.1597 1.1269 2.5928 8 6 2.0467 2.0316 3.4539 9 6 2.3470 1.3313 4.7811 10 8 1.1204 1.0397 5.4538 11 6 3.2042 2.2463 5.6579 12 7 3.5914 1.5321 6.8769 13 6 4.3667 2.1548 7.8184 14 1 4.6924 3.1726 7.6623 15 6 4.7331 1.4781 8.9737 16 7 4.3358 0.2379 9.1640 17 14 5.7901 2.3279 10.2582 18 1 4.9163 3.0209 11.2387 19 1 6.6208 1.3182 10.9624 20 1 6.6737 3.3200 9.5948 21 6 3.1030 0.0280 4.5124 22 6 2.2279 -0.8995 3.6634 23 6 2.0323 -0.7104 -1.2305 24 6 2.8300 -0.0449 -2.1490 25 6 3.2695 -0.7385 -3.2660 26 6 2.9001 -2.0608 -3.4261 27 7 2.1401 -2.6618 -2.5319 28 6 1.7091 -2.0351 -1.4545 29 1 -0.3633 0.4011 -0.9461 30 1 -0.3633 -1.0200 0.1257 31 1 -0.3634 0.6188 0.8205 32 1 0.1906 0.9993 3.0752 33 1 1.0244 1.5769 1.6093 34 1 1.5290 2.9712 3.6474 35 1 2.9806 2.2319 2.9287 36 1 1.2346 0.5948 6.3047 37 1 4.0990 2.5409 5.1096 38 1 2.6319 3.1351 5.9238 39 1 3.2992 0.6178 7.0169 40 1 4.5922 -0.2350 9.9712 41 1 4.0270 0.2471 3.9773 42 1 3.3370 -0.4587 5.4593 43 1 1.3459 -1.1923 4.2329 44 1 2.7975 -1.7866 3.3862 45 1 3.1024 0.9892 -1.9977 46 1 3.8925 -0.2518 -4.0017 47 1 3.2380 -2.6080 -4.2938 48 1 1.0922 -2.5619 -0.7415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001674106983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:31 Heat of formation + Delta-G solvation = -36.557776 kcal Electronic energy + Delta-G solvation = -29197.362278 eV Core-core repulsion = 25252.467853 eV Total energy + Delta-G solvation = -3944.894425 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.02486 -39.97388 -38.51142 -35.61951 -34.93728 -34.06160 -32.39860 -31.92808 -31.20855 -30.59831 -29.63011 -26.84709 -25.28008 -23.97358 -23.74384 -23.62231 -22.34343 -21.62020 -20.15239 -19.03300 -17.62163 -17.43676 -17.27530 -16.37137 -16.15566 -15.84833 -15.30451 -15.03234 -14.98044 -14.42647 -14.35795 -14.02020 -13.91149 -13.81495 -13.62748 -13.33161 -13.28771 -13.13275 -12.83450 -12.62820 -12.43268 -12.15604 -12.01871 -11.78086 -11.68359 -11.49924 -11.16942 -11.05831 -10.97390 -10.86275 -10.39279 -10.16095 -10.10432 -9.78830 -9.63943 -9.60478 -9.44249 -9.16908 -8.97614 -8.59065 -7.04227 -5.86295 -3.15642 0.89237 1.08000 2.52572 2.90873 3.38628 3.44102 3.45595 3.63464 4.09814 4.25900 4.42141 4.48006 4.49976 4.56586 4.67638 4.69508 4.82840 4.84556 4.90835 4.98371 5.11427 5.20203 5.26391 5.33124 5.36285 5.38662 5.48238 5.48994 5.58202 5.59925 5.71918 5.78532 5.85618 5.87103 5.98508 5.99349 6.03513 6.06585 6.29429 6.38325 6.48481 6.53873 6.63685 6.69127 7.35943 7.62161 7.80153 8.02559 8.09040 8.32363 9.43327 9.96930 10.30893 11.36428 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.002348 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.382857 B =11919.889856 C =12193.554703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.067 4.067 3 H 0.105 0.895 4 C 0.517 3.483 5 O -0.537 6.537 6 N -0.603 5.603 7 C 0.110 3.890 8 C -0.119 4.119 9 C 0.130 3.870 10 O -0.562 6.562 11 C 0.128 3.872 12 N -0.730 5.730 13 C -0.242 4.242 14 H 0.070 0.930 15 C -0.012 4.012 16 N -0.933 5.933 17 Si 0.909 3.091 18 H -0.289 1.289 19 H -0.291 1.291 20 H -0.282 1.282 21 C -0.156 4.156 22 C 0.117 3.883 23 C -0.119 4.119 24 C -0.069 4.069 25 C -0.177 4.177 26 C 0.095 3.905 27 N -0.487 5.487 28 C 0.138 3.862 29 H 0.069 0.931 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.384 0.616 37 H 0.025 0.975 38 H 0.029 0.971 39 H 0.381 0.619 40 H 0.256 0.744 41 H 0.072 0.928 42 H 0.091 0.909 43 H 0.073 0.927 44 H 0.089 0.911 45 H 0.133 0.867 46 H 0.134 0.866 47 H 0.153 0.847 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.562 1.301 -23.560 25.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.089 4.089 3 H 0.123 0.877 4 C 0.305 3.695 5 O -0.414 6.414 6 N -0.336 5.336 7 C -0.013 4.013 8 C -0.158 4.158 9 C 0.089 3.911 10 O -0.369 6.369 11 C 0.001 3.999 12 N -0.376 5.376 13 C -0.373 4.373 14 H 0.088 0.912 15 C -0.208 4.208 16 N -0.582 5.582 17 Si 0.740 3.260 18 H -0.216 1.216 19 H -0.217 1.217 20 H -0.208 1.208 21 C -0.194 4.194 22 C -0.005 4.005 23 C -0.122 4.122 24 C -0.095 4.095 25 C -0.197 4.197 26 C -0.062 4.062 27 N -0.196 5.196 28 C -0.020 4.020 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.233 0.767 37 H 0.042 0.958 38 H 0.047 0.953 39 H 0.216 0.784 40 H 0.066 0.934 41 H 0.090 0.910 42 H 0.110 0.890 43 H 0.091 0.909 44 H 0.107 0.893 45 H 0.151 0.849 46 H 0.152 0.848 47 H 0.171 0.829 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -8.619 0.254 -24.178 25.670 hybrid contribution 1.231 0.964 1.612 2.246 sum -7.388 1.218 -22.567 23.776 Atomic orbital electron populations 1.21916 0.91539 1.03514 1.03364 1.20209 0.98029 1.00160 0.90494 0.87725 1.20367 0.79396 0.85576 0.84204 1.90723 1.41066 1.23532 1.86049 1.48086 1.59295 1.20460 1.05726 1.21829 0.96748 0.82581 1.00141 1.21867 1.00691 0.98785 0.94410 1.21271 0.84555 0.93674 0.91581 1.86337 1.30356 1.82103 1.38153 1.21319 0.95580 0.94448 0.88598 1.42332 1.62237 1.14820 1.18209 1.19192 1.23675 0.96980 0.97446 0.91166 1.24740 1.01222 0.96316 0.98507 1.69632 1.50126 1.10376 1.28032 0.86168 0.79925 0.78265 0.81683 1.21642 1.21715 1.20773 1.22528 0.98782 0.96735 1.01362 1.21603 0.99143 0.95408 0.84342 1.20345 0.99717 0.96039 0.96079 1.21467 0.94591 1.00188 0.93256 1.22080 1.02202 0.96339 0.99082 1.22783 0.93657 0.92296 0.97439 1.67735 1.10580 1.38531 1.02720 1.22534 0.95557 0.90811 0.93061 0.91159 0.91659 0.90724 0.90087 0.89942 0.89840 0.90437 0.76703 0.95772 0.95343 0.78402 0.93374 0.90967 0.89026 0.90893 0.89287 0.84897 0.84814 0.82926 0.83113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.56 37.16 0.32 -0.69 16 2 C -0.07 -0.60 2.07 -92.93 -0.19 -0.79 16 3 H 0.10 0.73 6.98 -51.93 -0.36 0.37 16 4 C 0.52 6.49 6.91 -10.99 -0.08 6.41 16 5 O -0.54 -8.78 14.29 5.56 0.08 -8.70 16 6 N -0.60 -7.23 2.97 -172.77 -0.51 -7.74 16 7 C 0.11 1.08 4.84 -3.71 -0.02 1.06 16 8 C -0.12 -1.38 5.11 -26.62 -0.14 -1.51 16 9 C 0.13 1.95 0.71 -90.58 -0.06 1.88 16 10 O -0.56 -8.62 11.70 -35.23 -0.41 -9.04 16 11 C 0.13 2.43 5.43 -4.04 -0.02 2.41 16 12 N -0.73 -17.25 5.07 -59.91 -0.30 -17.56 16 13 C -0.24 -6.54 9.99 -15.06 -0.15 -6.69 16 14 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 15 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 16 N -0.93 -27.21 13.06 55.49 0.72 -26.49 16 17 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 18 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 21 C -0.16 -2.38 4.88 -26.61 -0.13 -2.51 16 22 C 0.12 1.61 6.20 -3.71 -0.02 1.59 16 23 C -0.12 -1.22 4.46 -104.48 -0.47 -1.69 16 24 C -0.07 -0.60 9.81 -39.28 -0.39 -0.99 16 25 C -0.18 -1.46 10.11 -39.44 -0.40 -1.86 16 26 C 0.09 0.92 11.18 -17.55 -0.20 0.72 16 27 N -0.49 -6.03 10.36 -13.25 -0.14 -6.17 16 28 C 0.14 1.64 9.12 -17.55 -0.16 1.48 16 29 H 0.07 0.40 8.13 -51.93 -0.42 -0.02 16 30 H 0.06 0.50 7.68 -51.93 -0.40 0.10 16 31 H 0.07 0.45 5.88 -51.93 -0.31 0.14 16 32 H 0.08 0.82 7.81 -51.93 -0.41 0.42 16 33 H 0.08 0.57 4.83 -51.93 -0.25 0.32 16 34 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.38 6.03 8.19 45.56 0.37 6.40 16 37 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.38 9.21 5.55 -40.82 -0.23 8.99 16 40 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.09 1.60 6.53 -51.93 -0.34 1.26 16 43 H 0.07 0.98 7.81 -51.93 -0.41 0.58 16 44 H 0.09 1.34 7.00 -51.93 -0.36 0.98 16 45 H 0.13 0.83 8.00 -52.49 -0.42 0.41 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.15 1.04 8.06 -52.48 -0.42 0.62 16 48 H 0.15 1.79 7.48 -52.48 -0.39 1.40 16 LS Contribution 378.04 15.07 5.70 5.70 Total: -1.00 -33.18 378.04 -8.51 -41.69 By element: Atomic # 1 Polarization: 19.37 SS G_CDS: -6.42 Total: 12.94 kcal Atomic # 6 Polarization: 0.59 SS G_CDS: -2.20 Total: -1.60 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.23 Total: -57.95 kcal Atomic # 8 Polarization: -17.41 SS G_CDS: -0.33 Total: -17.74 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.18 -8.51 -41.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674106983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.133 kcal (2) G-P(sol) polarization free energy of solvation -33.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds