Wall clock time and date at job start Tue Mar 31 2020 18:09:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08999 * 109.47054 * 2 1 4 4 C 1.50694 * 109.47331 * 119.99838 * 2 1 3 5 5 O 1.21279 * 120.00123 * 113.68434 * 4 2 1 6 6 N 1.34780 * 120.00245 * 293.68877 * 4 2 1 7 7 C 1.46926 * 120.62652 * 356.38174 * 6 4 2 8 8 C 1.53189 * 108.77422 * 233.58570 * 7 6 4 9 9 C 1.53036 * 109.31752 * 305.36620 * 8 7 6 10 10 O 1.42903 * 109.46029 * 301.36166 * 9 8 7 11 11 C 1.53000 * 109.46739 * 181.38434 * 9 8 7 12 12 N 1.46495 * 109.47471 * 184.99803 * 11 9 8 13 13 C 1.36939 * 119.99912 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00045 * 0.02562 * 13 12 11 15 15 C 1.38814 * 119.99693 * 179.97438 * 13 12 11 16 16 N 1.31618 * 119.99908 * 0.02562 * 15 13 12 17 17 Si 1.86794 * 119.99673 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47239 * 90.00586 * 17 15 13 19 19 H 1.48503 * 109.47286 * 210.00385 * 17 15 13 20 20 H 1.48498 * 109.47533 * 330.00254 * 17 15 13 21 21 C 1.53045 * 109.53744 * 61.36198 * 9 8 7 22 22 C 1.46924 * 120.63581 * 176.35793 * 6 4 2 23 23 C 1.50705 * 109.47161 * 239.99965 * 2 1 3 24 24 C 1.38666 * 120.41860 * 119.99628 * 23 2 1 25 25 C 1.38633 * 118.41980 * 179.97438 * 24 23 2 26 26 C 1.38221 * 119.16088 * 0.02562 * 25 24 23 27 27 N 1.31861 * 120.76364 * 359.97438 * 26 25 24 28 28 C 1.31882 * 121.72321 * 359.69746 * 27 26 25 29 29 H 1.08998 * 109.47223 * 67.02604 * 1 2 3 30 30 H 1.09004 * 109.47052 * 187.02311 * 1 2 3 31 31 H 1.09002 * 109.47285 * 307.02321 * 1 2 3 32 32 H 1.09003 * 109.58574 * 113.80461 * 7 6 4 33 33 H 1.09000 * 109.58948 * 353.37373 * 7 6 4 34 34 H 1.09004 * 109.50170 * 185.41159 * 8 7 6 35 35 H 1.09004 * 109.49736 * 65.31958 * 8 7 6 36 36 H 0.96700 * 114.00097 * 180.02562 * 10 9 8 37 37 H 1.09005 * 109.46720 * 305.00177 * 11 9 8 38 38 H 1.09004 * 109.46598 * 64.99599 * 11 9 8 39 39 H 0.97001 * 119.99848 * 0.02562 * 12 11 9 40 40 H 0.97005 * 119.99570 * 179.97438 * 16 15 13 41 41 H 1.09001 * 109.49405 * 58.58929 * 21 9 8 42 42 H 1.09000 * 109.50014 * 178.69031 * 21 9 8 43 43 H 1.08994 * 109.59081 * 246.20564 * 22 6 4 44 44 H 1.09005 * 109.58669 * 6.62742 * 22 6 4 45 45 H 1.08002 * 120.78977 * 359.97438 * 24 23 2 46 46 H 1.07998 * 120.41992 * 180.02562 * 25 24 23 47 47 H 1.08004 * 119.61848 * 179.97438 * 26 25 24 48 48 H 1.08005 * 119.61565 * 180.30690 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2304 5 8 2.6323 -1.7589 1.1229 6 7 1.8149 -0.1805 2.4505 7 6 1.1597 1.1269 2.5928 8 6 2.0467 2.0316 3.4539 9 6 2.3470 1.3313 4.7811 10 8 1.1204 1.0397 5.4538 11 6 3.2042 2.2463 5.6579 12 7 3.5914 1.5321 6.8769 13 6 4.3667 2.1548 7.8184 14 1 4.6924 3.1726 7.6623 15 6 4.7331 1.4781 8.9737 16 7 4.3358 0.2379 9.1640 17 14 5.7901 2.3279 10.2582 18 1 4.9163 3.0209 11.2387 19 1 6.6208 1.3182 10.9624 20 1 6.6737 3.3200 9.5948 21 6 3.1030 0.0280 4.5124 22 6 2.2279 -0.8995 3.6634 23 6 2.0323 -0.7104 -1.2305 24 6 2.8300 -0.0449 -2.1490 25 6 3.2695 -0.7385 -3.2660 26 6 2.9001 -2.0608 -3.4261 27 7 2.1401 -2.6618 -2.5319 28 6 1.7091 -2.0351 -1.4545 29 1 -0.3633 0.4011 -0.9461 30 1 -0.3633 -1.0200 0.1257 31 1 -0.3634 0.6188 0.8205 32 1 0.1906 0.9993 3.0752 33 1 1.0244 1.5769 1.6093 34 1 1.5290 2.9712 3.6474 35 1 2.9806 2.2319 2.9287 36 1 1.2346 0.5948 6.3047 37 1 4.0990 2.5409 5.1096 38 1 2.6319 3.1351 5.9238 39 1 3.2992 0.6178 7.0169 40 1 4.5922 -0.2350 9.9712 41 1 4.0270 0.2471 3.9773 42 1 3.3370 -0.4587 5.4593 43 1 1.3459 -1.1923 4.2329 44 1 2.7975 -1.7866 3.3862 45 1 3.1024 0.9892 -1.9977 46 1 3.8925 -0.2518 -4.0017 47 1 3.2380 -2.6080 -4.2938 48 1 1.0922 -2.5619 -0.7415 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674106983.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:30 Heat of formation + Delta-G solvation = -60.277077 kcal Electronic energy + Delta-G solvation = -29198.390824 eV Core-core repulsion = 25252.467853 eV Total energy + Delta-G solvation = -3945.922971 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.90145 -40.87635 -39.65138 -36.84259 -35.84579 -35.65080 -33.47735 -33.07247 -32.23052 -32.10938 -30.44040 -28.29283 -26.18006 -25.44788 -24.67303 -24.46394 -23.54547 -22.73062 -21.26464 -20.00357 -19.44722 -18.38467 -18.00021 -17.33057 -17.22345 -16.90191 -16.72776 -16.25987 -15.96967 -15.79958 -15.55337 -15.08420 -14.95497 -14.81261 -14.64413 -14.54587 -14.30139 -14.19676 -13.95249 -13.74524 -13.29540 -13.21119 -13.08279 -12.98096 -12.79960 -12.71185 -12.49321 -12.36561 -12.19366 -12.14931 -12.07225 -11.96180 -11.34184 -10.99312 -10.86624 -10.75373 -10.56846 -10.36233 -9.88906 -9.63980 -9.03529 -7.98353 -5.26744 0.18111 0.39241 1.46716 1.47385 1.55711 1.58448 1.97309 2.53635 2.89652 3.26221 3.39001 3.40865 3.49384 3.68170 3.71194 3.78306 3.90402 3.96107 4.03790 4.06384 4.13088 4.21641 4.24122 4.32037 4.40228 4.46917 4.58960 4.67142 4.70262 4.79050 4.82975 4.84537 4.87207 4.91277 4.95546 4.99126 5.08309 5.15028 5.21448 5.22654 5.34644 5.36861 5.47475 5.53895 5.81220 6.23695 6.42754 6.71870 7.06482 7.13933 7.31241 8.03869 8.27048 9.24524 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.024083 B = 0.002348 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.382857 B =11919.889856 C =12193.554703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.058 4.058 3 H 0.137 0.863 4 C 0.513 3.487 5 O -0.583 6.583 6 N -0.601 5.601 7 C 0.111 3.889 8 C -0.117 4.117 9 C 0.138 3.862 10 O -0.559 6.559 11 C 0.127 3.873 12 N -0.740 5.740 13 C -0.245 4.245 14 H 0.074 0.926 15 C -0.072 4.072 16 N -0.966 5.966 17 Si 0.971 3.029 18 H -0.286 1.286 19 H -0.297 1.297 20 H -0.271 1.271 21 C -0.145 4.145 22 C 0.125 3.875 23 C -0.128 4.128 24 C -0.072 4.072 25 C -0.171 4.171 26 C 0.079 3.921 27 N -0.523 5.523 28 C 0.113 3.887 29 H 0.087 0.913 30 H 0.049 0.951 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.086 0.914 36 H 0.380 0.620 37 H 0.025 0.975 38 H 0.028 0.972 39 H 0.375 0.625 40 H 0.252 0.748 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.075 0.925 44 H 0.070 0.930 45 H 0.165 0.835 46 H 0.167 0.833 47 H 0.175 0.825 48 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.896 4.170 -25.629 27.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.079 4.079 3 H 0.155 0.845 4 C 0.302 3.698 5 O -0.463 6.463 6 N -0.333 5.333 7 C -0.010 4.010 8 C -0.155 4.155 9 C 0.097 3.903 10 O -0.366 6.366 11 C 0.000 4.000 12 N -0.384 5.384 13 C -0.377 4.377 14 H 0.091 0.909 15 C -0.264 4.264 16 N -0.617 5.617 17 Si 0.800 3.200 18 H -0.213 1.213 19 H -0.224 1.224 20 H -0.196 1.196 21 C -0.184 4.184 22 C 0.002 3.998 23 C -0.131 4.131 24 C -0.098 4.098 25 C -0.191 4.191 26 C -0.078 4.078 27 N -0.232 5.232 28 C -0.044 4.044 29 H 0.106 0.894 30 H 0.068 0.932 31 H 0.108 0.892 32 H 0.102 0.898 33 H 0.141 0.859 34 H 0.119 0.881 35 H 0.105 0.895 36 H 0.229 0.771 37 H 0.043 0.957 38 H 0.046 0.954 39 H 0.209 0.791 40 H 0.060 0.940 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.094 0.906 44 H 0.088 0.912 45 H 0.183 0.817 46 H 0.185 0.815 47 H 0.192 0.808 48 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -8.980 3.177 -26.277 27.950 hybrid contribution 1.356 0.074 2.182 2.570 sum -7.624 3.252 -24.095 25.481 Atomic orbital electron populations 1.21932 0.89951 1.03151 1.04939 1.20270 0.99163 1.00784 0.87691 0.84538 1.21100 0.78423 0.85112 0.85131 1.90709 1.43164 1.25707 1.86706 1.48142 1.59063 1.21152 1.04937 1.22034 0.95934 0.81018 1.02036 1.21924 1.01893 0.99383 0.92299 1.21271 0.83743 0.92735 0.92539 1.86344 1.30358 1.81922 1.37983 1.21502 0.96161 0.94866 0.87478 1.42493 1.61854 1.14830 1.19259 1.19572 1.23110 0.97109 0.97930 0.90855 1.25509 1.03136 0.97079 1.00697 1.69779 1.51755 1.11724 1.28395 0.85183 0.78365 0.77226 0.79233 1.21341 1.22355 1.19612 1.22370 0.98799 0.97228 1.00034 1.21339 0.98653 0.94655 0.85154 1.20498 1.00110 0.95477 0.96978 1.21907 0.93494 1.01634 0.92724 1.22472 1.01485 0.95650 0.99465 1.23270 0.93339 0.93529 0.97625 1.67660 1.12024 1.39896 1.03649 1.22454 0.96679 0.91994 0.93272 0.89386 0.93152 0.89197 0.89814 0.85921 0.88112 0.89501 0.77130 0.95691 0.95439 0.79083 0.93965 0.91962 0.91924 0.90646 0.91193 0.81702 0.81514 0.80809 0.84755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 8.56 71.98 0.62 -0.95 16 2 C -0.06 -0.87 2.07 -12.29 -0.03 -0.89 16 3 H 0.14 1.19 6.98 -2.39 -0.02 1.17 16 4 C 0.51 12.31 6.91 87.65 0.61 12.92 16 5 O -0.58 -19.54 14.29 -3.03 -0.04 -19.59 16 6 N -0.60 -13.52 2.97 -818.92 -2.43 -15.96 16 7 C 0.11 1.79 4.84 86.36 0.42 2.21 16 8 C -0.12 -2.33 5.11 30.67 0.16 -2.17 16 9 C 0.14 3.99 0.71 -10.77 -0.01 3.98 16 10 O -0.56 -16.66 11.70 -148.98 -1.74 -18.41 16 11 C 0.13 4.71 5.43 86.38 0.47 5.18 16 12 N -0.74 -35.32 5.07 -343.45 -1.74 -37.07 16 13 C -0.25 -13.29 9.99 84.03 0.84 -12.45 16 14 H 0.07 3.85 7.83 -2.91 -0.02 3.82 16 15 C -0.07 -4.02 5.50 84.86 0.47 -3.55 16 16 N -0.97 -57.49 13.06 21.65 0.28 -57.21 16 17 Si 0.97 45.40 29.55 68.60 2.03 47.43 16 18 H -0.29 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.30 -14.06 7.11 99.48 0.71 -13.36 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 21 C -0.15 -4.52 4.88 30.67 0.15 -4.38 16 22 C 0.12 3.50 6.20 86.36 0.54 4.03 16 23 C -0.13 -2.42 4.46 -19.77 -0.09 -2.51 16 24 C -0.07 -1.03 9.81 22.47 0.22 -0.81 16 25 C -0.17 -2.34 10.11 22.36 0.23 -2.11 16 26 C 0.08 1.43 11.18 84.68 0.95 2.38 16 27 N -0.52 -13.17 10.36 -195.84 -2.03 -15.20 16 28 C 0.11 2.75 9.12 84.67 0.77 3.52 16 29 H 0.09 0.70 8.13 -2.39 -0.02 0.68 16 30 H 0.05 0.72 7.68 -2.39 -0.02 0.70 16 31 H 0.09 0.71 5.88 -2.39 -0.01 0.70 16 32 H 0.08 1.39 7.81 -2.39 -0.02 1.37 16 33 H 0.12 1.04 4.83 -2.39 -0.01 1.03 16 34 H 0.10 1.74 8.14 -2.39 -0.02 1.73 16 35 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 36 H 0.38 12.08 8.19 -74.06 -0.61 11.47 16 37 H 0.03 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.03 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.38 18.69 5.55 -92.71 -0.51 18.18 16 40 H 0.25 14.61 8.31 -92.70 -0.77 13.84 16 41 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 2.31 6.53 -2.39 -0.02 2.29 16 43 H 0.08 2.06 7.81 -2.39 -0.02 2.04 16 44 H 0.07 2.23 7.00 -2.38 -0.02 2.22 16 45 H 0.17 1.23 8.00 -2.91 -0.02 1.20 16 46 H 0.17 1.10 8.06 -2.91 -0.02 1.07 16 47 H 0.17 2.14 8.06 -2.91 -0.02 2.11 16 48 H 0.13 3.49 7.48 -2.91 -0.02 3.47 16 Total: -1.00 -74.57 378.04 0.49 -74.08 By element: Atomic # 1 Polarization: 37.65 SS G_CDS: -0.13 Total: 37.52 kcal Atomic # 6 Polarization: -1.91 SS G_CDS: 6.30 Total: 4.39 kcal Atomic # 7 Polarization: -119.51 SS G_CDS: -5.92 Total: -125.43 kcal Atomic # 8 Polarization: -36.21 SS G_CDS: -1.79 Total: -37.99 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Total: -74.57 0.49 -74.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674106983.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.807 kcal (2) G-P(sol) polarization free energy of solvation -74.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds