Wall clock time and date at job start Tue Mar 31 2020 18:09:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09010 * 109.46992 * 2 1 4 4 C 1.50705 * 109.47466 * 240.00235 * 2 1 3 5 5 O 1.21274 * 119.99721 * 261.56036 * 4 2 1 6 6 N 1.34773 * 119.99996 * 81.55574 * 4 2 1 7 7 C 1.46929 * 120.63249 * 3.90462 * 6 4 2 8 8 C 1.53623 * 108.54584 * 126.36392 * 7 6 4 9 9 C 1.53037 * 109.23640 * 54.85760 * 8 7 6 10 10 O 1.42894 * 109.46362 * 58.53201 * 9 8 7 11 11 C 1.53006 * 109.45920 * 178.49095 * 9 8 7 12 12 N 1.46503 * 109.46710 * 305.06952 * 11 9 8 13 13 C 1.36938 * 119.99743 * 180.02562 * 12 11 9 14 14 H 1.08009 * 119.99987 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00300 * 179.97438 * 13 12 11 16 16 N 1.31617 * 120.00442 * 179.97438 * 15 13 12 17 17 Si 1.86805 * 119.99769 * 0.02562 * 15 13 12 18 18 H 1.48499 * 109.47128 * 89.99268 * 17 15 13 19 19 H 1.48498 * 109.47315 * 209.99842 * 17 15 13 20 20 H 1.48502 * 109.46980 * 329.99763 * 17 15 13 21 21 C 1.53046 * 109.54256 * 298.50644 * 9 8 7 22 22 C 1.46926 * 120.62757 * 184.18077 * 6 4 2 23 23 C 1.50696 * 109.47485 * 119.99852 * 2 1 3 24 24 C 1.38674 * 120.41984 * 239.72566 * 23 2 1 25 25 C 1.38627 * 118.42115 * 179.78194 * 24 23 2 26 26 C 1.38230 * 119.15892 * 0.50857 * 25 24 23 27 27 N 1.31851 * 120.76471 * 359.73145 * 26 25 24 28 28 C 1.31889 * 121.72353 * 359.97438 * 27 26 25 29 29 H 1.08996 * 109.47388 * 62.43310 * 1 2 3 30 30 H 1.09005 * 109.46707 * 182.42979 * 1 2 3 31 31 H 1.08998 * 109.47636 * 302.42836 * 1 2 3 32 32 H 1.08999 * 109.58449 * 246.20235 * 7 6 4 33 33 H 1.09005 * 109.58573 * 6.62269 * 7 6 4 34 34 H 1.08999 * 109.63726 * 294.86735 * 8 7 6 35 35 H 1.09004 * 109.43059 * 174.72235 * 8 7 6 36 36 H 0.96703 * 114.00392 * 59.92871 * 10 9 8 37 37 H 1.09002 * 109.47103 * 65.06660 * 11 9 8 38 38 H 1.08993 * 109.47549 * 185.06568 * 11 9 8 39 39 H 0.96996 * 120.00200 * 359.97438 * 12 11 9 40 40 H 0.96998 * 120.00297 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.49428 * 301.42334 * 21 9 8 42 42 H 1.08999 * 109.49945 * 181.32206 * 21 9 8 43 43 H 1.08990 * 109.58855 * 353.37044 * 22 6 4 44 44 H 1.09001 * 109.58548 * 113.80188 * 22 6 4 45 45 H 1.08003 * 120.79198 * 0.02562 * 24 23 2 46 46 H 1.08004 * 120.41924 * 180.22196 * 25 24 23 47 47 H 1.08001 * 119.61467 * 179.74565 * 26 25 24 48 48 H 1.08007 * 119.61533 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.3799 -1.8702 -1.1616 6 7 2.0955 -0.0567 -2.4074 7 6 1.7593 1.3713 -2.4897 8 6 2.9313 2.1118 -3.1515 9 6 3.2413 1.4607 -4.5014 10 8 2.0786 1.5074 -5.3307 11 6 4.3834 2.2178 -5.1821 12 7 4.0363 3.6376 -5.2827 13 6 4.9121 4.5172 -5.8611 14 1 5.8589 4.1643 -6.2427 15 6 4.5832 5.8624 -5.9569 16 7 5.4252 6.7079 -6.5123 17 14 2.9460 6.4729 -5.2961 18 1 3.1027 6.8677 -3.8732 19 1 2.4986 7.6460 -6.0891 20 1 1.9352 5.3900 -5.4008 21 6 3.6543 0.0032 -4.2839 22 6 2.4959 -0.7600 -3.6337 23 6 2.0324 -0.7103 1.2304 24 6 2.8348 -0.0464 2.1460 25 6 3.2700 -0.7383 3.2657 26 6 2.9009 -2.0608 3.4257 27 7 2.1405 -2.6617 2.5318 28 6 1.7036 -2.0330 1.4579 29 1 -0.3634 0.4756 -0.9109 30 1 -0.3633 -1.0268 0.0436 31 1 -0.3634 0.5511 0.8674 32 1 0.8572 1.5004 -3.0878 33 1 1.5951 1.7663 -1.4871 34 1 3.8102 2.0545 -2.5095 35 1 2.6598 3.1563 -3.3052 36 1 1.7597 2.4023 -5.5111 37 1 5.2942 2.1072 -4.5937 38 1 4.5444 1.8115 -6.1806 39 1 3.1859 3.9545 -4.9403 40 1 5.1954 7.6479 -6.5789 41 1 4.5264 -0.0343 -3.6311 42 1 3.8975 -0.4531 -5.2434 43 1 2.8179 -1.7714 -3.3863 44 1 1.6527 -0.8010 -4.3233 45 1 3.1110 0.9864 1.9925 46 1 3.8933 -0.2516 4.0013 47 1 3.2392 -2.6081 4.2932 48 1 1.0821 -2.5583 0.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001674106984.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:33 Heat of formation + Delta-G solvation = -56.896190 kcal Electronic energy + Delta-G solvation = -29401.672806 eV Core-core repulsion = 25455.896441 eV Total energy + Delta-G solvation = -3945.776365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.90843 -40.90838 -39.72221 -36.89055 -35.90749 -35.67806 -33.65391 -33.11246 -32.63505 -31.91821 -30.60347 -28.57821 -26.23244 -25.21677 -24.57372 -24.44657 -23.76965 -22.59058 -21.32963 -20.00697 -19.96731 -18.50349 -17.99946 -17.32308 -17.25348 -16.93421 -16.71691 -16.24366 -16.09574 -15.82464 -15.65889 -15.10392 -14.90445 -14.75277 -14.72533 -14.59505 -14.40620 -14.20660 -13.95662 -13.63684 -13.58623 -13.49339 -13.18805 -13.05746 -12.84269 -12.76557 -12.44652 -12.35357 -12.26864 -12.18664 -12.08083 -11.87167 -11.38787 -11.00771 -10.96636 -10.79382 -10.55156 -10.36079 -9.90636 -9.65863 -9.34638 -8.02659 -5.38988 0.15848 0.37019 1.36983 1.44918 1.52230 1.56119 1.95606 2.49484 2.88295 3.19888 3.32347 3.40141 3.44848 3.47224 3.67310 3.72073 3.82040 3.91066 3.97798 4.04896 4.09372 4.10671 4.20559 4.33856 4.37512 4.42557 4.56024 4.64070 4.67711 4.72906 4.79982 4.82187 4.83623 4.86833 4.92482 4.97925 5.04191 5.12086 5.18140 5.20262 5.29892 5.34954 5.50047 5.73672 5.79633 6.18631 6.38525 6.73179 7.04984 7.06030 7.11807 7.77037 7.99181 9.18817 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.017302 B = 0.002799 C = 0.002649 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.915373 B =10002.080010 C =10566.163123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.062 4.062 3 H 0.129 0.871 4 C 0.517 3.483 5 O -0.577 6.577 6 N -0.602 5.602 7 C 0.111 3.889 8 C -0.158 4.158 9 C 0.137 3.863 10 O -0.559 6.559 11 C 0.131 3.869 12 N -0.748 5.748 13 C -0.240 4.240 14 H 0.048 0.952 15 C -0.066 4.066 16 N -0.986 5.986 17 Si 0.959 3.041 18 H -0.272 1.272 19 H -0.301 1.301 20 H -0.237 1.237 21 C -0.112 4.112 22 C 0.123 3.877 23 C -0.134 4.134 24 C -0.073 4.073 25 C -0.173 4.173 26 C 0.081 3.919 27 N -0.522 5.522 28 C 0.117 3.883 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.382 0.618 37 H 0.029 0.971 38 H 0.023 0.977 39 H 0.369 0.631 40 H 0.258 0.742 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.161 0.839 46 H 0.165 0.835 47 H 0.176 0.824 48 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.531 -13.192 19.200 26.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.083 4.083 3 H 0.146 0.854 4 C 0.306 3.694 5 O -0.457 6.457 6 N -0.334 5.334 7 C -0.011 4.011 8 C -0.197 4.197 9 C 0.096 3.904 10 O -0.366 6.366 11 C 0.004 3.996 12 N -0.395 5.395 13 C -0.371 4.371 14 H 0.066 0.934 15 C -0.258 4.258 16 N -0.636 5.636 17 Si 0.784 3.216 18 H -0.198 1.198 19 H -0.228 1.228 20 H -0.160 1.160 21 C -0.151 4.151 22 C 0.001 3.999 23 C -0.136 4.136 24 C -0.099 4.099 25 C -0.192 4.192 26 C -0.075 4.075 27 N -0.231 5.231 28 C -0.040 4.040 29 H 0.099 0.901 30 H 0.072 0.928 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.132 0.868 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.231 0.769 37 H 0.047 0.953 38 H 0.041 0.959 39 H 0.204 0.796 40 H 0.067 0.933 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.098 0.902 44 H 0.097 0.903 45 H 0.179 0.821 46 H 0.183 0.817 47 H 0.193 0.807 48 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -12.315 -15.291 19.264 27.506 hybrid contribution 0.135 2.135 -0.559 2.211 sum -12.180 -13.156 18.705 25.909 Atomic orbital electron populations 1.21786 0.89909 1.03160 1.04541 1.20298 0.99201 1.00572 0.88262 0.85354 1.20920 0.76972 0.86638 0.84853 1.90688 1.50431 1.19021 1.85518 1.48148 1.66564 1.11213 1.07491 1.22050 0.97485 0.78282 1.03265 1.22609 1.00170 1.00246 0.96636 1.21232 0.84723 0.95218 0.89245 1.86428 1.44798 1.34027 1.71332 1.21436 0.96823 0.83432 0.97924 1.42523 1.19777 1.04103 1.73126 1.18956 0.98381 0.89306 1.30448 0.93388 1.25641 1.02563 0.95978 1.01576 1.69908 1.38792 1.03372 1.51546 0.85373 0.79912 0.78258 0.78016 1.19825 1.22802 1.16040 1.21801 0.98428 0.92855 1.01991 1.21415 0.97360 0.95930 0.85199 1.20522 1.00341 0.95666 0.97081 1.21900 0.93675 1.01479 0.92847 1.22464 1.01623 0.95773 0.99372 1.23279 0.93244 0.93377 0.97618 1.67695 1.11919 1.39817 1.03669 1.22555 0.96505 0.91807 0.93112 0.90111 0.92767 0.89355 0.89299 0.86791 0.90518 0.90049 0.76894 0.95274 0.95942 0.79623 0.93293 0.90360 0.89697 0.90152 0.90327 0.82140 0.81700 0.80725 0.84148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 8.95 71.98 0.64 -0.91 16 2 C -0.06 -0.92 2.08 -12.29 -0.03 -0.95 16 3 H 0.13 1.27 6.06 -2.38 -0.01 1.26 16 4 C 0.52 11.31 6.81 87.66 0.60 11.91 16 5 O -0.58 -17.26 14.02 -3.01 -0.04 -17.30 16 6 N -0.60 -11.97 2.97 -818.06 -2.43 -14.40 16 7 C 0.11 1.75 5.63 86.51 0.49 2.23 16 8 C -0.16 -3.39 4.89 30.82 0.15 -3.24 16 9 C 0.14 3.53 0.71 -10.76 -0.01 3.53 16 10 O -0.56 -14.34 11.70 -148.98 -1.74 -16.08 16 11 C 0.13 4.60 5.43 86.38 0.47 5.07 16 12 N -0.75 -31.40 4.87 -343.43 -1.67 -33.07 16 13 C -0.24 -13.12 10.47 84.03 0.88 -12.24 16 14 H 0.05 2.96 8.06 -2.91 -0.02 2.94 16 15 C -0.07 -3.73 5.50 84.86 0.47 -3.26 16 16 N -0.99 -61.66 13.97 21.65 0.30 -61.36 16 17 Si 0.96 41.27 27.74 68.60 1.90 43.18 16 18 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 19 H -0.30 -13.54 7.11 99.48 0.71 -12.83 16 20 H -0.24 -8.44 6.52 99.48 0.65 -7.79 16 21 C -0.11 -2.64 5.11 30.68 0.16 -2.48 16 22 C 0.12 2.75 6.20 86.36 0.54 3.28 16 23 C -0.13 -2.48 4.62 -19.78 -0.09 -2.57 16 24 C -0.07 -1.08 9.81 22.47 0.22 -0.86 16 25 C -0.17 -2.39 10.11 22.36 0.23 -2.17 16 26 C 0.08 1.44 11.18 84.69 0.95 2.38 16 27 N -0.52 -12.64 10.36 -195.84 -2.03 -14.67 16 28 C 0.12 2.73 9.03 84.67 0.76 3.50 16 29 H 0.08 0.74 7.69 -2.39 -0.02 0.73 16 30 H 0.05 0.76 7.33 -2.38 -0.02 0.74 16 31 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 32 H 0.09 1.28 7.81 -2.39 -0.02 1.27 16 33 H 0.11 1.14 5.41 -2.38 -0.01 1.12 16 34 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 1.82 6.53 -2.38 -0.02 1.81 16 36 H 0.38 9.13 8.19 -74.05 -0.61 8.53 16 37 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.37 13.78 3.41 -92.71 -0.32 13.47 16 40 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 41 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 43 H 0.08 1.97 7.00 -2.39 -0.02 1.96 16 44 H 0.08 1.73 7.81 -2.39 -0.02 1.71 16 45 H 0.16 1.42 8.00 -2.91 -0.02 1.40 16 46 H 0.17 1.19 8.06 -2.91 -0.02 1.17 16 47 H 0.18 2.05 8.06 -2.91 -0.02 2.03 16 48 H 0.14 3.49 6.97 -2.91 -0.02 3.47 16 Total: -1.00 -76.08 376.42 0.72 -75.37 By element: Atomic # 1 Polarization: 35.12 SS G_CDS: 0.01 Total: 35.13 kcal Atomic # 6 Polarization: -3.21 SS G_CDS: 6.42 Total: 3.21 kcal Atomic # 7 Polarization: -117.67 SS G_CDS: -5.83 Total: -123.50 kcal Atomic # 8 Polarization: -31.60 SS G_CDS: -1.79 Total: -33.39 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 1.90 Total: 43.18 kcal Total: -76.08 0.72 -75.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001674106984.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.471 kcal (2) G-P(sol) polarization free energy of solvation -76.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds