Wall clock time and date at job start Tue Mar 31 2020 18:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47280 * 2 1 4 4 C 1.50699 * 109.47230 * 240.00259 * 2 1 3 5 5 O 1.21283 * 120.00178 * 240.00339 * 4 2 1 6 6 N 1.34774 * 120.00067 * 59.99612 * 4 2 1 7 7 C 1.46498 * 120.00047 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47139 * 180.02562 * 7 6 4 9 9 N 1.46904 * 109.47300 * 179.97438 * 8 7 6 10 10 C 1.46901 * 110.99869 * 66.04576 * 9 8 7 11 11 C 1.46901 * 110.99966 * 189.99578 * 9 8 7 12 12 C 1.50707 * 109.46854 * 170.00176 * 11 9 8 13 13 O 1.21290 * 119.99557 * 359.97438 * 12 11 9 14 14 N 1.34772 * 119.99874 * 180.02562 * 12 11 9 15 15 C 1.37101 * 120.00171 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99216 * 0.02562 * 15 14 12 17 17 C 1.38944 * 120.00001 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00450 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99790 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46813 * 90.00083 * 19 17 15 21 21 H 1.48500 * 109.46938 * 209.99960 * 19 17 15 22 22 H 1.48500 * 109.47184 * 330.00044 * 19 17 15 23 23 C 1.50706 * 109.47362 * 120.00113 * 2 1 3 24 24 C 1.38234 * 120.00196 * 240.00342 * 23 2 1 25 25 C 1.38235 * 119.99814 * 179.97438 * 24 23 2 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38243 * 120.00092 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99618 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47197 * 299.99426 * 1 2 3 31 31 H 1.08991 * 109.46972 * 59.99823 * 1 2 3 32 32 H 0.96996 * 120.00198 * 0.02562 * 6 4 2 33 33 H 1.09007 * 109.47336 * 300.00177 * 7 6 4 34 34 H 1.08995 * 109.47357 * 60.00066 * 7 6 4 35 35 H 1.08998 * 109.46895 * 299.99764 * 8 7 6 36 36 H 1.08998 * 109.47853 * 60.00115 * 8 7 6 37 37 H 1.08998 * 109.47253 * 60.00072 * 10 9 8 38 38 H 1.09000 * 109.47460 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.46800 * 299.99749 * 10 9 8 40 40 H 1.08997 * 109.47572 * 289.99700 * 11 9 8 41 41 H 1.08996 * 109.47274 * 50.00230 * 11 9 8 42 42 H 0.97001 * 120.00125 * 0.02562 * 14 12 11 43 43 H 0.97001 * 120.00312 * 180.02562 * 18 17 15 44 44 H 1.08000 * 119.99516 * 0.24808 * 24 23 2 45 45 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.00235 * 179.97438 * 27 26 25 48 48 H 1.08005 * 119.99804 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4545 7 6 2.1946 -0.9408 -3.6507 8 6 1.6852 -0.2191 -4.8999 9 7 2.1749 -0.9115 -6.0994 10 6 1.5891 -2.2543 -6.2082 11 6 1.9086 -0.1214 -7.3089 12 6 2.6332 -0.7350 -8.4793 13 8 3.3056 -1.7320 -8.3212 14 7 2.5348 -0.1753 -9.7013 15 6 3.1944 -0.7331 -10.7660 16 1 3.7924 -1.6213 -10.6253 17 6 3.0925 -0.1563 -12.0259 18 7 2.3644 0.9242 -12.1971 19 14 3.9906 -0.9168 -13.4767 20 1 3.1106 -1.9152 -14.1354 21 1 4.3484 0.1463 -14.4498 22 1 5.2268 -1.5861 -12.9980 23 6 2.0324 -0.7104 1.2305 24 6 2.8271 -0.0387 2.1404 25 6 3.2874 -0.6903 3.2693 26 6 2.9527 -2.0134 3.4886 27 6 2.1571 -2.6849 2.5791 28 6 1.6959 -2.0330 1.4507 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.1493 0.5389 -2.5436 33 1 3.2847 -0.9412 -3.6509 34 1 1.8309 -1.9683 -3.6506 35 1 0.5952 -0.2184 -4.8999 36 1 2.0492 0.8083 -4.9000 37 1 0.5039 -2.1733 -6.2700 38 1 1.9688 -2.7449 -7.1045 39 1 1.8604 -2.8412 -5.3306 40 1 0.8372 -0.1130 -7.5089 41 1 2.2585 0.9001 -7.1600 42 1 1.9979 0.6227 -9.8275 43 1 2.2929 1.3266 -13.0768 44 1 3.0846 0.9965 1.9716 45 1 3.9086 -0.1654 3.9800 46 1 3.3127 -2.5226 4.3703 47 1 1.8959 -3.7188 2.7501 48 1 1.0746 -2.5578 0.7400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690988451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:22 Heat of formation + Delta-G solvation = -43.207266 kcal Electronic energy + Delta-G solvation = -27263.079312 eV Core-core repulsion = 23317.896543 eV Total energy + Delta-G solvation = -3945.182769 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -40.55999 -39.02360 -38.58554 -36.80369 -34.71646 -34.46316 -33.79680 -31.26005 -31.14362 -30.14733 -29.05678 -27.68983 -25.60684 -24.90724 -23.80062 -22.83504 -21.97277 -21.25113 -20.06122 -19.17629 -17.86246 -17.38603 -17.15115 -16.36411 -16.08793 -15.82857 -15.54130 -15.23841 -14.86724 -14.62675 -14.55376 -14.14365 -13.93259 -13.89418 -13.55708 -13.47476 -13.32491 -13.23518 -12.88909 -12.63297 -12.42432 -12.13911 -12.00758 -11.83789 -11.52515 -11.41551 -11.28685 -11.26919 -11.19273 -11.04334 -10.94819 -10.39080 -10.22320 -9.96334 -9.48388 -9.20869 -9.10605 -8.97398 -8.48850 -7.99602 -7.89868 -6.42286 -3.83025 1.08406 1.20179 2.45811 2.87970 3.17669 3.26502 3.32724 3.58633 3.89426 4.04587 4.17780 4.26046 4.40436 4.64578 4.70096 4.79084 4.82873 4.88312 4.90255 4.99048 5.11391 5.16873 5.23776 5.24346 5.31731 5.37952 5.43880 5.62328 5.65599 5.67684 5.73055 5.80734 5.83603 5.89159 5.92012 6.00171 6.20553 6.23583 6.27393 6.28938 6.35324 6.54791 6.75834 7.17803 7.28112 7.32553 7.54967 8.04030 8.05908 8.61258 9.17804 9.53695 10.05614 10.75436 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034871 B = 0.001600 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.760402 B =17498.579211 C =17751.386531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.072 4.072 3 H 0.105 0.895 4 C 0.516 3.484 5 O -0.527 6.527 6 N -0.729 5.729 7 C 0.122 3.878 8 C 0.045 3.955 9 N -0.515 5.515 10 C 0.018 3.982 11 C 0.047 3.953 12 C 0.443 3.557 13 O -0.576 6.576 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.284 1.284 22 H -0.269 1.269 23 C -0.068 4.068 24 C -0.112 4.112 25 C -0.124 4.124 26 C -0.121 4.121 27 C -0.122 4.122 28 C -0.084 4.084 29 H 0.063 0.937 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.398 0.602 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.036 0.964 36 H 0.079 0.921 37 H 0.015 0.985 38 H 0.098 0.902 39 H 0.063 0.937 40 H 0.048 0.952 41 H 0.089 0.911 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.120 0.880 45 H 0.121 0.879 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.219 2.559 28.359 29.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 H 0.123 0.877 4 C 0.301 3.699 5 O -0.402 6.402 6 N -0.381 5.381 7 C -0.002 4.002 8 C -0.084 4.084 9 N -0.239 5.239 10 C -0.130 4.130 11 C -0.084 4.084 12 C 0.229 3.771 13 O -0.460 6.460 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.179 4.179 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.209 1.209 22 H -0.194 1.194 23 C -0.068 4.068 24 C -0.130 4.130 25 C -0.142 4.142 26 C -0.139 4.139 27 C -0.140 4.140 28 C -0.102 4.102 29 H 0.082 0.918 30 H 0.089 0.911 31 H 0.084 0.916 32 H 0.232 0.768 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.034 0.966 38 H 0.116 0.884 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.107 0.893 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.138 0.862 47 H 0.139 0.861 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.767 1.208 28.380 28.985 hybrid contribution -1.032 0.768 -1.075 1.676 sum -6.799 1.976 27.305 28.208 Atomic orbital electron populations 1.21802 0.91900 1.03189 1.02957 1.20305 0.97758 1.00298 0.90951 0.87713 1.20434 0.80393 0.84813 0.84255 1.90755 1.36989 1.25924 1.86538 1.45934 1.54094 1.32294 1.05794 1.21339 1.00511 0.96137 0.82206 1.22252 0.97419 0.98476 0.90272 1.61445 1.58979 1.02947 1.00555 1.22627 0.95554 0.90174 1.04599 1.21868 0.98534 0.97721 0.90288 1.19706 0.86508 0.87182 0.83736 1.90495 1.44231 1.27157 1.84116 1.41859 1.44629 1.27094 1.06510 1.19707 1.26167 1.10955 0.86000 0.87884 1.25252 0.97543 0.96146 0.98973 1.69609 1.39943 1.20296 1.24525 0.85858 0.79704 0.78393 0.80344 1.20441 1.20936 1.19396 1.19289 0.98360 0.94501 0.94676 1.21002 0.97650 0.99826 0.94565 1.21074 1.00368 0.95065 0.97698 1.21150 0.98428 0.94862 0.99415 1.21131 0.98375 0.99853 0.94659 1.20913 0.99027 0.93789 0.96463 0.91756 0.91094 0.91621 0.76760 0.90276 0.91185 0.94586 0.90303 0.96631 0.88368 0.91868 0.93358 0.89326 0.77511 0.91895 0.86162 0.86127 0.86245 0.86135 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.77 8.90 37.16 0.33 -0.44 16 2 C -0.07 -0.55 2.90 -92.92 -0.27 -0.82 16 3 H 0.10 0.59 7.88 -51.93 -0.41 0.18 16 4 C 0.52 5.59 7.02 -10.99 -0.08 5.51 16 5 O -0.53 -8.07 15.12 5.55 0.08 -7.99 16 6 N -0.73 -6.67 5.45 -60.30 -0.33 -7.00 16 7 C 0.12 1.44 5.60 -4.04 -0.02 1.42 16 8 C 0.04 0.52 5.07 -3.82 -0.02 0.50 16 9 N -0.52 -8.37 4.50 -244.36 -1.10 -9.46 16 10 C 0.02 0.29 8.96 60.07 0.54 0.83 16 11 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 12 C 0.44 10.35 7.47 -10.98 -0.08 10.27 16 13 O -0.58 -15.44 13.91 5.55 0.08 -15.37 16 14 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 15 C -0.30 -8.28 9.68 -14.93 -0.14 -8.43 16 16 H 0.10 3.00 7.16 -52.48 -0.38 2.63 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.36 13.05 55.50 0.72 -23.63 16 19 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 C -0.07 -0.63 4.39 -104.62 -0.46 -1.09 16 24 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16 25 C -0.12 -1.01 10.05 -39.59 -0.40 -1.40 16 26 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 27 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 28 C -0.08 -0.84 7.94 -39.58 -0.31 -1.15 16 29 H 0.06 0.40 7.38 -51.93 -0.38 0.02 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.26 7.56 -51.93 -0.39 -0.13 16 32 H 0.40 2.39 7.89 -40.82 -0.32 2.07 16 33 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 34 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 35 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 36 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 37 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 38 H 0.10 1.94 5.83 -51.93 -0.30 1.64 16 39 H 0.06 0.93 6.47 -51.92 -0.34 0.59 16 40 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 41 H 0.09 1.37 7.93 -51.93 -0.41 0.95 16 42 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 43 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 44 H 0.12 0.77 7.95 -52.49 -0.42 0.36 16 45 H 0.12 0.71 8.06 -52.49 -0.42 0.29 16 46 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 47 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 48 H 0.12 1.18 7.52 -52.48 -0.39 0.78 16 LS Contribution 395.99 15.07 5.97 5.97 Total: -1.00 -34.22 395.99 -9.21 -43.43 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.33 Total: 10.04 kcal Atomic # 6 Polarization: 4.46 SS G_CDS: -2.22 Total: 2.24 kcal Atomic # 7 Polarization: -53.54 SS G_CDS: -0.76 Total: -54.31 kcal Atomic # 8 Polarization: -23.52 SS G_CDS: 0.16 Total: -23.35 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -34.22 -9.21 -43.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690988451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.226 kcal (2) G-P(sol) polarization free energy of solvation -34.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds