Wall clock time and date at job start Tue Mar 31 2020 18:06:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08995 * 109.47280 * 2 1 4 4 C 1.50699 * 109.47230 * 240.00259 * 2 1 3 5 5 O 1.21283 * 120.00178 * 240.00339 * 4 2 1 6 6 N 1.34774 * 120.00067 * 59.99612 * 4 2 1 7 7 C 1.46498 * 120.00047 * 180.02562 * 6 4 2 8 8 C 1.52996 * 109.47139 * 180.02562 * 7 6 4 9 9 N 1.46904 * 109.47300 * 179.97438 * 8 7 6 10 10 C 1.46901 * 110.99869 * 66.04576 * 9 8 7 11 11 C 1.46901 * 110.99966 * 189.99578 * 9 8 7 12 12 C 1.50707 * 109.46854 * 170.00176 * 11 9 8 13 13 O 1.21290 * 119.99557 * 359.97438 * 12 11 9 14 14 N 1.34772 * 119.99874 * 180.02562 * 12 11 9 15 15 C 1.37101 * 120.00171 * 179.97438 * 14 12 11 16 16 H 1.08003 * 119.99216 * 0.02562 * 15 14 12 17 17 C 1.38944 * 120.00001 * 179.97438 * 15 14 12 18 18 N 1.31410 * 120.00450 * 0.02562 * 17 15 14 19 19 Si 1.86807 * 119.99790 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.46813 * 90.00083 * 19 17 15 21 21 H 1.48500 * 109.46938 * 209.99960 * 19 17 15 22 22 H 1.48500 * 109.47184 * 330.00044 * 19 17 15 23 23 C 1.50706 * 109.47362 * 120.00113 * 2 1 3 24 24 C 1.38234 * 120.00196 * 240.00342 * 23 2 1 25 25 C 1.38235 * 119.99814 * 179.97438 * 24 23 2 26 26 C 1.38230 * 120.00326 * 359.97438 * 25 24 23 27 27 C 1.38243 * 120.00092 * 359.97438 * 26 25 24 28 28 C 1.38234 * 119.99618 * 359.97438 * 27 26 25 29 29 H 1.09004 * 109.47360 * 179.97438 * 1 2 3 30 30 H 1.08994 * 109.47197 * 299.99426 * 1 2 3 31 31 H 1.08991 * 109.46972 * 59.99823 * 1 2 3 32 32 H 0.96996 * 120.00198 * 0.02562 * 6 4 2 33 33 H 1.09007 * 109.47336 * 300.00177 * 7 6 4 34 34 H 1.08995 * 109.47357 * 60.00066 * 7 6 4 35 35 H 1.08998 * 109.46895 * 299.99764 * 8 7 6 36 36 H 1.08998 * 109.47853 * 60.00115 * 8 7 6 37 37 H 1.08998 * 109.47253 * 60.00072 * 10 9 8 38 38 H 1.09000 * 109.47460 * 180.02562 * 10 9 8 39 39 H 1.09008 * 109.46800 * 299.99749 * 10 9 8 40 40 H 1.08997 * 109.47572 * 289.99700 * 11 9 8 41 41 H 1.08996 * 109.47274 * 50.00230 * 11 9 8 42 42 H 0.97001 * 120.00125 * 0.02562 * 14 12 11 43 43 H 0.97001 * 120.00312 * 180.02562 * 18 17 15 44 44 H 1.08000 * 119.99516 * 0.24808 * 24 23 2 45 45 H 1.08000 * 119.99297 * 179.97438 * 25 24 23 46 46 H 1.08001 * 120.00350 * 179.97438 * 26 25 24 47 47 H 1.07999 * 120.00235 * 179.97438 * 27 26 25 48 48 H 1.08005 * 119.99804 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7296 -1.6965 -1.1193 6 7 1.7067 -0.2499 -2.4545 7 6 2.1946 -0.9408 -3.6507 8 6 1.6852 -0.2191 -4.8999 9 7 2.1749 -0.9115 -6.0994 10 6 1.5891 -2.2543 -6.2082 11 6 1.9086 -0.1214 -7.3089 12 6 2.6332 -0.7350 -8.4793 13 8 3.3056 -1.7320 -8.3212 14 7 2.5348 -0.1753 -9.7013 15 6 3.1944 -0.7331 -10.7660 16 1 3.7924 -1.6213 -10.6253 17 6 3.0925 -0.1563 -12.0259 18 7 2.3644 0.9242 -12.1971 19 14 3.9906 -0.9168 -13.4767 20 1 3.1106 -1.9152 -14.1354 21 1 4.3484 0.1463 -14.4498 22 1 5.2268 -1.5861 -12.9980 23 6 2.0324 -0.7104 1.2305 24 6 2.8271 -0.0387 2.1404 25 6 3.2874 -0.6903 3.2693 26 6 2.9527 -2.0134 3.4886 27 6 2.1571 -2.6849 2.5791 28 6 1.6959 -2.0330 1.4507 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.1493 0.5389 -2.5436 33 1 3.2847 -0.9412 -3.6509 34 1 1.8309 -1.9683 -3.6506 35 1 0.5952 -0.2184 -4.8999 36 1 2.0492 0.8083 -4.9000 37 1 0.5039 -2.1733 -6.2700 38 1 1.9688 -2.7449 -7.1045 39 1 1.8604 -2.8412 -5.3306 40 1 0.8372 -0.1130 -7.5089 41 1 2.2585 0.9001 -7.1600 42 1 1.9979 0.6227 -9.8275 43 1 2.2929 1.3266 -13.0768 44 1 3.0846 0.9965 1.9716 45 1 3.9086 -0.1654 3.9800 46 1 3.3127 -2.5226 4.3703 47 1 1.8959 -3.7188 2.7501 48 1 1.0746 -2.5578 0.7400 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690988451.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:20 Heat of formation + Delta-G solvation = -67.874949 kcal Electronic energy + Delta-G solvation = -27264.148983 eV Core-core repulsion = 23317.896543 eV Total energy + Delta-G solvation = -3946.252440 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.94 seconds Orbital eigenvalues (eV) -41.33378 -40.38883 -39.63497 -38.15659 -36.01157 -35.53708 -35.08178 -33.26856 -31.76635 -31.02175 -29.94339 -29.01537 -27.05266 -25.94743 -25.00347 -23.47650 -22.78286 -22.29943 -21.02448 -20.79112 -19.84699 -18.19146 -17.88531 -17.64745 -17.22622 -16.88311 -16.56572 -16.40082 -16.19060 -15.93367 -15.69970 -15.36855 -15.12194 -15.02867 -14.62779 -14.44580 -14.31011 -14.15027 -13.78201 -13.67967 -13.44820 -13.18804 -13.03903 -13.00044 -12.92603 -12.59602 -12.55707 -12.48326 -12.39628 -12.15445 -12.09127 -11.84928 -11.78043 -11.45292 -10.83436 -10.28352 -10.10565 -9.98417 -9.75958 -9.61095 -9.23590 -8.45537 -5.93735 0.44407 0.55290 1.38221 1.42155 1.54533 1.63557 2.02804 2.07581 2.31115 2.85538 3.01232 3.21593 3.43379 3.57509 3.77705 3.88292 4.04043 4.10410 4.14982 4.24645 4.26262 4.29595 4.36440 4.37430 4.47075 4.53687 4.63275 4.63738 4.64452 4.70013 4.84729 4.86066 4.93941 4.96799 5.14107 5.18518 5.20681 5.26649 5.38798 5.42496 5.59168 5.65428 5.70751 5.85805 6.05280 6.14708 6.17500 6.56063 6.62810 7.15003 7.26705 7.58675 8.15278 8.71738 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.034871 B = 0.001600 C = 0.001577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.760402 B =17498.579211 C =17751.386531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.064 4.064 3 H 0.132 0.868 4 C 0.513 3.487 5 O -0.579 6.579 6 N -0.712 5.712 7 C 0.131 3.869 8 C 0.053 3.947 9 N -0.541 5.541 10 C 0.025 3.975 11 C 0.061 3.939 12 C 0.439 3.561 13 O -0.617 6.617 14 N -0.574 5.574 15 C -0.333 4.333 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.919 5.919 19 Si 0.991 3.009 20 H -0.271 1.271 21 H -0.270 1.270 22 H -0.275 1.275 23 C -0.083 4.083 24 C -0.122 4.122 25 C -0.131 4.131 26 C -0.130 4.130 27 C -0.138 4.138 28 C -0.105 4.105 29 H 0.050 0.950 30 H 0.083 0.917 31 H 0.086 0.914 32 H 0.418 0.582 33 H 0.051 0.949 34 H 0.055 0.945 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.397 0.603 43 H 0.277 0.723 44 H 0.142 0.858 45 H 0.143 0.857 46 H 0.139 0.861 47 H 0.130 0.870 48 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.296 4.763 29.357 30.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.085 4.085 3 H 0.150 0.850 4 C 0.300 3.700 5 O -0.458 6.458 6 N -0.365 5.365 7 C 0.006 3.994 8 C -0.075 4.075 9 N -0.265 5.265 10 C -0.123 4.123 11 C -0.070 4.070 12 C 0.226 3.774 13 O -0.503 6.503 14 N -0.212 5.212 15 C -0.463 4.463 16 H 0.095 0.905 17 C -0.211 4.211 18 N -0.560 5.560 19 Si 0.815 3.185 20 H -0.197 1.197 21 H -0.195 1.195 22 H -0.200 1.200 23 C -0.083 4.083 24 C -0.140 4.140 25 C -0.149 4.149 26 C -0.147 4.147 27 C -0.156 4.156 28 C -0.123 4.123 29 H 0.069 0.931 30 H 0.102 0.898 31 H 0.105 0.895 32 H 0.256 0.744 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.118 0.882 37 H 0.054 0.946 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.091 0.909 41 H 0.133 0.867 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.160 0.840 45 H 0.161 0.839 46 H 0.157 0.843 47 H 0.147 0.853 48 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -6.894 3.468 29.388 30.384 hybrid contribution -0.684 0.051 -1.294 1.464 sum -7.578 3.519 28.094 29.310 Atomic orbital electron populations 1.21814 0.90141 1.02885 1.04618 1.20354 0.99058 1.00734 0.88339 0.85044 1.21081 0.79399 0.84168 0.85361 1.90737 1.39434 1.28335 1.87278 1.45734 1.53715 1.32513 1.04582 1.21059 0.98878 0.95946 0.83535 1.22252 0.98919 0.98651 0.87639 1.61328 1.60452 1.03157 1.01605 1.22455 0.96541 0.90414 1.02888 1.21736 0.98956 0.98208 0.88106 1.20852 0.85556 0.86304 0.84652 1.90478 1.45885 1.28980 1.84937 1.41916 1.44979 1.27458 1.06805 1.19640 1.27626 1.11211 0.87774 0.90509 1.25981 0.97932 0.96431 1.00771 1.69660 1.40232 1.20732 1.25404 0.84961 0.78298 0.77951 0.77324 1.19679 1.19498 1.20027 1.19561 0.98684 0.94461 0.95597 1.21340 0.97207 1.00960 0.94482 1.21439 1.00236 0.95141 0.98059 1.21455 0.98105 0.95302 0.99883 1.21373 0.98829 1.00575 0.94851 1.21006 0.99856 0.94619 0.96850 0.93083 0.89818 0.89540 0.74449 0.93024 0.92678 0.91899 0.88238 0.94560 0.92597 0.91042 0.90863 0.86664 0.76926 0.91330 0.83988 0.83911 0.84318 0.85252 0.87458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.19 8.90 71.98 0.64 -0.55 16 2 C -0.06 -0.85 2.90 -12.29 -0.04 -0.89 16 3 H 0.13 1.04 7.88 -2.39 -0.02 1.02 16 4 C 0.51 10.63 7.02 87.66 0.62 11.25 16 5 O -0.58 -18.16 15.12 -3.04 -0.05 -18.21 16 6 N -0.71 -11.58 5.45 -463.07 -2.52 -14.11 16 7 C 0.13 2.94 5.60 86.38 0.48 3.42 16 8 C 0.05 1.08 5.07 86.30 0.44 1.52 16 9 N -0.54 -16.77 4.50 -927.03 -4.17 -20.94 16 10 C 0.02 0.80 8.96 127.69 1.14 1.94 16 11 C 0.06 1.99 5.45 85.56 0.47 2.46 16 12 C 0.44 20.66 7.47 87.66 0.66 21.31 16 13 O -0.62 -34.20 13.91 -3.06 -0.04 -34.24 16 14 N -0.57 -29.12 5.29 -306.98 -1.62 -30.74 16 15 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 16 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 17 C -0.01 -0.60 5.50 84.93 0.47 -0.14 16 18 N -0.92 -49.12 13.05 21.66 0.28 -48.84 16 19 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 20 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 21 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 22 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 23 C -0.08 -1.48 4.39 -19.86 -0.09 -1.57 16 24 C -0.12 -1.88 9.67 22.27 0.22 -1.67 16 25 C -0.13 -1.93 10.05 22.27 0.22 -1.71 16 26 C -0.13 -2.05 10.05 22.27 0.22 -1.82 16 27 C -0.14 -2.55 10.05 22.27 0.22 -2.33 16 28 C -0.11 -2.16 7.94 22.27 0.18 -1.98 16 29 H 0.05 0.59 7.38 -2.38 -0.02 0.57 16 30 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 0.38 7.56 -2.39 -0.02 0.36 16 32 H 0.42 3.51 7.89 -92.71 -0.73 2.78 16 33 H 0.05 1.46 8.14 -2.38 -0.02 1.44 16 34 H 0.05 1.42 6.55 -2.39 -0.02 1.40 16 35 H 0.06 1.01 8.12 -2.39 -0.02 0.99 16 36 H 0.10 1.66 7.93 -2.39 -0.02 1.65 16 37 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.06 2.28 5.83 -2.39 -0.01 2.26 16 39 H 0.07 2.11 6.47 -2.38 -0.02 2.10 16 40 H 0.07 2.07 8.12 -2.39 -0.02 2.05 16 41 H 0.12 3.18 7.93 -2.39 -0.02 3.17 16 42 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 43 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 44 H 0.14 1.45 7.95 -2.91 -0.02 1.43 16 45 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 46 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 47 H 0.13 1.96 8.06 -2.91 -0.02 1.94 16 48 H 0.11 2.31 7.52 -2.91 -0.02 2.29 16 Total: -1.00 -77.73 395.99 0.08 -77.65 By element: Atomic # 1 Polarization: 33.69 SS G_CDS: -0.48 Total: 33.21 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: 6.66 Total: 11.18 kcal Atomic # 7 Polarization: -106.60 SS G_CDS: -8.03 Total: -114.63 kcal Atomic # 8 Polarization: -52.36 SS G_CDS: -0.09 Total: -52.45 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -77.73 0.08 -77.65 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690988451.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.775 kcal (2) G-P(sol) polarization free energy of solvation -77.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.94 seconds