Wall clock time and date at job start Tue Mar 31 2020 17:13:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35679 * 117.00162 * 2 1 4 4 C 1.38894 * 119.62617 * 180.02562 * 3 2 1 5 5 C 1.39566 * 118.94838 * 180.02562 * 4 3 2 6 6 C 1.48158 * 120.89673 * 180.02562 * 5 4 3 7 7 O 1.21518 * 119.99503 * 328.46048 * 6 5 4 8 8 N 1.34769 * 120.00616 * 148.45938 * 6 5 4 9 9 C 1.46930 * 120.63156 * 353.54123 * 8 6 5 10 10 C 1.53184 * 108.77617 * 126.36739 * 9 8 6 11 11 C 1.53049 * 109.31529 * 54.63954 * 10 9 8 12 12 H 1.08993 * 109.45703 * 58.63855 * 11 10 9 13 13 C 1.52992 * 109.46173 * 178.61403 * 11 10 9 14 14 C 1.53042 * 109.52151 * 298.62666 * 11 10 9 15 15 C 1.46931 * 120.63538 * 173.51654 * 8 6 5 16 16 H 1.09002 * 109.58503 * 113.84134 * 15 8 6 17 17 C 1.53000 * 109.58337 * 353.56449 * 15 8 6 18 18 N 1.46501 * 109.47547 * 78.42880 * 17 15 8 19 19 C 1.36938 * 120.00094 * 174.70647 * 18 17 15 20 20 H 1.08001 * 119.99930 * 0.02562 * 19 18 17 21 21 C 1.38807 * 119.99776 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00184 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99968 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.46909 * 359.97438 * 23 21 19 25 25 H 1.48504 * 109.47313 * 119.99770 * 23 21 19 26 26 H 1.48496 * 109.46857 * 239.99793 * 23 21 19 27 27 C 1.39974 * 118.21823 * 0.26681 * 5 4 3 28 28 C 1.37983 * 119.13199 * 359.48234 * 27 5 4 29 29 N 1.31913 * 120.97094 * 0.53558 * 28 27 5 30 30 H 1.09003 * 109.46848 * 299.99402 * 1 2 3 31 31 H 1.08994 * 109.47435 * 59.99779 * 1 2 3 32 32 H 1.09004 * 109.46965 * 180.02562 * 1 2 3 33 33 H 1.08002 * 120.52490 * 0.02562 * 4 3 2 34 34 H 1.08998 * 109.58037 * 6.58065 * 9 8 6 35 35 H 1.09001 * 109.58689 * 246.15655 * 9 8 6 36 36 H 1.09002 * 109.50424 * 294.68536 * 10 9 8 37 37 H 1.09004 * 109.52628 * 174.60223 * 10 9 8 38 38 H 1.09002 * 109.47708 * 60.02274 * 13 11 10 39 39 H 1.09005 * 109.47397 * 300.02221 * 13 11 10 40 40 H 1.09002 * 109.47409 * 180.02562 * 13 11 10 41 41 H 1.08997 * 109.49186 * 181.32178 * 14 11 10 42 42 H 1.08998 * 109.49811 * 301.41861 * 14 11 10 43 43 H 1.09000 * 109.47042 * 198.42824 * 17 15 8 44 44 H 1.09006 * 109.46991 * 318.42782 * 17 15 8 45 45 H 0.97005 * 119.99554 * 354.70448 * 18 17 15 46 46 H 0.96996 * 119.99741 * 179.97438 * 22 21 19 47 47 H 1.08001 * 120.43554 * 179.73167 * 27 5 4 48 48 H 1.07999 * 119.50990 * 180.27558 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2089 0.0000 4 6 3.4325 1.2725 -0.0005 5 6 4.0514 2.5234 0.0000 6 6 5.5283 2.6415 -0.0011 7 8 6.2058 1.7954 0.5481 8 7 6.1203 3.6873 -0.6112 9 6 5.3276 4.6414 -1.3987 10 6 5.6099 6.0574 -0.8871 11 6 7.1181 6.3160 -0.9193 12 1 7.4855 6.1948 -1.9383 13 6 7.4011 7.7417 -0.4417 14 6 7.8275 5.3198 0.0006 15 6 7.5706 3.8953 -0.5011 16 1 8.0340 3.7629 -1.4788 17 6 8.1599 2.8864 0.4867 18 7 8.2980 1.5839 -0.1696 19 6 8.9065 0.5475 0.4869 20 1 9.2842 0.6903 1.4886 21 6 9.0378 -0.6864 -0.1352 22 7 8.5770 -0.8605 -1.3558 23 14 9.8672 -2.1004 0.7605 24 1 10.2935 -1.6495 2.1097 25 1 8.9123 -3.2298 0.8943 26 1 11.0556 -2.5456 -0.0106 27 6 3.2394 3.6636 0.0068 28 6 1.8680 3.5116 0.0018 29 7 1.3179 2.3126 0.0013 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 4.0231 0.3682 -0.0014 34 1 4.2671 4.4165 -1.2853 35 1 5.6081 4.5698 -2.4496 36 1 5.2460 6.1541 0.1358 37 1 5.1029 6.7826 -1.5237 38 1 7.0336 7.8632 0.5773 39 1 6.8962 8.4515 -1.0970 40 1 8.4751 7.9262 -0.4649 41 1 8.8990 5.5194 -0.0045 42 1 7.4425 5.4234 1.0150 43 1 9.1392 3.2319 0.8181 44 1 7.4977 2.7913 1.3473 45 1 7.9584 1.4556 -1.0691 46 1 8.6691 -1.7226 -1.7905 47 1 3.6805 4.6494 0.0118 48 1 1.2357 4.3871 0.0025 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691824008.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:34 Heat of formation + Delta-G solvation = 3.604837 kcal Electronic energy + Delta-G solvation = -30012.066341 eV Core-core repulsion = 26068.913497 eV Total energy + Delta-G solvation = -3943.152844 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.21784 -41.13053 -38.97305 -38.54246 -36.48706 -35.02671 -34.21446 -33.06293 -31.99912 -31.30266 -29.39985 -28.23305 -27.17028 -25.70873 -24.72413 -24.47320 -23.84276 -22.78855 -21.25481 -20.54995 -19.39169 -18.77057 -18.22051 -17.47580 -17.18517 -17.10057 -16.86560 -16.72525 -16.05064 -15.59028 -15.40868 -15.23098 -15.10266 -14.92273 -14.77168 -14.55885 -14.39598 -14.18722 -13.95308 -13.85311 -13.24734 -13.07837 -12.86742 -12.80775 -12.65668 -12.57727 -12.52487 -12.23485 -12.11084 -12.01322 -11.86489 -11.65740 -11.31283 -11.25563 -11.04334 -10.97213 -10.74877 -10.07680 -9.55126 -9.48437 -8.73810 -7.87346 -5.07698 -0.28966 0.05162 1.40799 1.43971 1.53020 1.73175 1.96509 2.20577 2.58916 2.72570 3.23093 3.41632 3.46278 3.75767 3.82599 3.85735 3.92389 3.95928 4.08404 4.13561 4.31642 4.33294 4.40998 4.43422 4.45240 4.56469 4.60641 4.67376 4.70992 4.73608 4.80562 4.87273 4.94109 4.98297 5.04147 5.05883 5.14512 5.17193 5.23848 5.30042 5.35786 5.46771 5.50793 5.60551 5.79004 6.16674 6.34379 6.49389 6.70708 7.31906 7.40930 8.20746 8.43152 9.37906 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007185 B = 0.005390 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3895.979555 B = 5193.649947 C = 8730.852539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.329 6.329 3 C 0.314 3.686 4 C -0.170 4.170 5 C -0.047 4.047 6 C 0.516 3.484 7 O -0.503 6.503 8 N -0.597 5.597 9 C 0.069 3.931 10 C -0.122 4.122 11 C -0.089 4.089 12 H 0.070 0.930 13 C -0.139 4.139 14 C -0.111 4.111 15 C 0.149 3.851 16 H 0.058 0.942 17 C 0.158 3.842 18 N -0.709 5.709 19 C -0.211 4.211 20 H 0.063 0.937 21 C -0.086 4.086 22 N -0.975 5.975 23 Si 0.967 3.033 24 H -0.270 1.270 25 H -0.300 1.300 26 H -0.290 1.290 27 C -0.183 4.183 28 C 0.148 3.852 29 N -0.532 5.532 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.122 0.878 35 H 0.067 0.933 36 H 0.076 0.924 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.052 0.948 41 H 0.077 0.923 42 H 0.067 0.933 43 H 0.017 0.983 44 H 0.024 0.976 45 H 0.365 0.635 46 H 0.245 0.755 47 H 0.188 0.812 48 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.928 21.195 -0.115 27.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.236 6.236 3 C 0.136 3.864 4 C -0.192 4.192 5 C -0.058 4.058 6 C 0.303 3.697 7 O -0.377 6.377 8 N -0.332 5.332 9 C -0.051 4.051 10 C -0.159 4.159 11 C -0.108 4.108 12 H 0.089 0.911 13 C -0.197 4.197 14 C -0.150 4.150 15 C 0.046 3.954 16 H 0.076 0.924 17 C 0.032 3.968 18 N -0.349 5.349 19 C -0.344 4.344 20 H 0.081 0.919 21 C -0.276 4.276 22 N -0.629 5.629 23 Si 0.797 3.203 24 H -0.194 1.194 25 H -0.228 1.228 26 H -0.217 1.217 27 C -0.202 4.202 28 C -0.007 4.007 29 N -0.257 5.257 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.135 0.865 33 H 0.130 0.870 34 H 0.140 0.860 35 H 0.085 0.915 36 H 0.095 0.905 37 H 0.127 0.873 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.071 0.929 41 H 0.096 0.904 42 H 0.086 0.914 43 H 0.034 0.966 44 H 0.042 0.958 45 H 0.197 0.803 46 H 0.054 0.946 47 H 0.205 0.795 48 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -17.243 20.303 0.362 26.640 hybrid contribution 1.394 -1.762 0.020 2.247 sum -15.849 18.541 0.382 24.394 Atomic orbital electron populations 1.23125 0.75119 1.04704 1.02831 1.86268 1.25103 1.24604 1.87648 1.19579 0.88347 0.85593 0.92908 1.21004 0.92848 0.98778 1.06550 1.20278 0.93678 0.93999 0.97802 1.18746 0.87402 0.82179 0.81394 1.91214 1.63275 1.39503 1.43676 1.47866 1.07756 1.26503 1.51067 1.22801 0.98237 0.89059 0.95047 1.22006 0.96022 0.94798 1.03116 1.21110 0.95578 0.95049 0.99050 0.91148 1.21758 1.01710 0.94554 1.01641 1.21928 1.01659 0.91308 1.00063 1.21394 0.79549 0.95954 0.98540 0.92394 1.21006 0.95732 0.84797 0.95293 1.42277 1.68852 1.07706 1.16064 1.19538 1.26128 0.91268 0.97467 0.91912 1.25402 1.04397 1.00053 0.97793 1.69836 1.54814 1.23515 1.14695 0.85132 0.77402 0.79679 0.78042 1.19427 1.22751 1.21680 1.22758 0.94806 0.99279 1.03395 1.23244 0.92675 0.94108 0.90709 1.67304 1.40764 0.99116 1.18521 0.91776 0.91631 0.86458 0.87050 0.86024 0.91454 0.90538 0.87286 0.92392 0.91028 0.92907 0.90404 0.91437 0.96580 0.95811 0.80329 0.94632 0.79485 0.76616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.71 10.38 113.37 1.18 1.89 16 2 O -0.33 -9.89 10.47 -89.97 -0.94 -10.83 16 3 C 0.31 9.63 7.49 84.80 0.63 10.26 16 4 C -0.17 -6.14 9.64 22.75 0.22 -5.92 16 5 C -0.05 -1.48 5.50 -19.90 -0.11 -1.59 16 6 C 0.52 19.99 7.20 86.88 0.63 20.61 16 7 O -0.50 -25.88 10.99 -3.77 -0.04 -25.92 16 8 N -0.60 -18.31 2.97 -798.07 -2.37 -20.68 16 9 C 0.07 1.32 5.56 86.36 0.48 1.80 16 10 C -0.12 -1.51 5.01 30.67 0.15 -1.36 16 11 C -0.09 -1.41 2.68 -10.77 -0.03 -1.44 16 12 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 13 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 14 C -0.11 -2.58 4.58 30.67 0.14 -2.44 16 15 C 0.15 4.99 2.90 44.97 0.13 5.12 16 16 H 0.06 2.11 8.12 -2.39 -0.02 2.09 16 17 C 0.16 7.15 4.94 86.38 0.43 7.58 16 18 N -0.71 -40.42 3.42 -343.44 -1.17 -41.59 16 19 C -0.21 -13.24 9.86 84.03 0.83 -12.41 16 20 H 0.06 3.86 7.83 -2.91 -0.02 3.84 16 21 C -0.09 -5.46 5.50 84.86 0.47 -5.00 16 22 N -0.98 -65.60 13.06 21.65 0.28 -65.32 16 23 Si 0.97 51.26 29.55 68.60 2.03 53.29 16 24 H -0.27 -13.52 7.11 99.48 0.71 -12.81 16 25 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 26 H -0.29 -14.95 7.11 99.48 0.71 -14.25 16 27 C -0.18 -3.59 7.55 22.63 0.17 -3.41 16 28 C 0.15 2.49 11.17 84.62 0.94 3.43 16 29 N -0.53 -12.72 9.18 -309.14 -2.84 -15.56 16 30 H 0.06 1.15 8.10 -2.39 -0.02 1.13 16 31 H 0.06 1.17 8.10 -2.39 -0.02 1.15 16 32 H 0.12 1.69 8.14 -2.38 -0.02 1.68 16 33 H 0.11 4.89 8.01 -2.91 -0.02 4.87 16 34 H 0.12 1.93 3.42 -2.42 -0.01 1.93 16 35 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.08 0.88 7.69 -2.39 -0.02 0.86 16 37 H 0.11 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.07 0.62 8.14 -2.38 -0.02 0.61 16 40 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 41 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 43 H 0.02 0.73 8.02 -2.39 -0.02 0.71 16 44 H 0.02 1.19 5.96 -2.42 -0.01 1.18 16 45 H 0.37 22.42 7.55 -92.70 -0.70 21.72 16 46 H 0.24 15.93 8.31 -92.71 -0.77 15.16 16 47 H 0.19 2.36 4.98 -2.91 -0.01 2.34 16 48 H 0.22 1.31 8.06 -2.91 -0.02 1.29 16 Total: -1.00 -86.71 377.56 2.14 -84.57 By element: Atomic # 1 Polarization: 25.63 SS G_CDS: 0.27 Total: 25.90 kcal Atomic # 6 Polarization: 9.21 SS G_CDS: 6.92 Total: 16.14 kcal Atomic # 7 Polarization: -137.05 SS G_CDS: -6.10 Total: -143.15 kcal Atomic # 8 Polarization: -35.76 SS G_CDS: -0.98 Total: -36.75 kcal Atomic # 14 Polarization: 51.26 SS G_CDS: 2.03 Total: 53.29 kcal Total: -86.71 2.14 -84.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691824008.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.177 kcal (2) G-P(sol) polarization free energy of solvation -86.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.572 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds