Wall clock time and date at job start Tue Mar 31 2020 17:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 109.87080 * 2 1 4 4 C 1.54315 * 109.88213 * 238.98483 * 2 1 3 5 5 H 1.09006 * 110.87609 * 336.67059 * 4 2 1 6 6 N 1.46497 * 110.72358 * 99.87222 * 4 2 1 7 7 C 1.34776 * 120.00425 * 199.97490 * 6 4 2 8 8 O 1.21282 * 120.00025 * 0.02562 * 7 6 4 9 9 C 1.50705 * 120.00154 * 179.97438 * 7 6 4 10 10 C 1.53000 * 109.47102 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47031 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.47234 * 179.97438 * 11 10 9 13 13 C 1.35758 * 119.62815 * 89.99763 * 12 11 10 14 14 C 1.35349 * 120.70753 * 180.02562 * 13 12 11 15 15 C 1.40196 * 119.94456 * 359.97388 * 14 13 12 16 16 C 1.36400 * 119.26589 * 0.02562 * 15 14 13 17 17 C 1.34662 * 119.62270 * 269.72545 * 12 11 10 18 18 O 1.22062 * 119.98738 * 359.97438 * 17 12 11 19 19 C 1.55156 * 102.94436 * 218.23501 * 4 2 1 20 20 C 1.54906 * 101.61451 * 35.48113 * 19 4 2 21 21 N 1.47017 * 110.01051 * 121.09571 * 2 1 3 22 22 C 1.36941 * 125.65253 * 298.46865 * 21 2 1 23 23 H 1.07992 * 119.99933 * 0.02562 * 22 21 2 24 24 C 1.38807 * 120.00015 * 179.97438 * 22 21 2 25 25 N 1.31625 * 120.00003 * 359.97438 * 24 22 21 26 26 Si 1.86806 * 120.00086 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.47045 * 89.99955 * 26 24 22 28 28 H 1.48492 * 109.47219 * 209.99857 * 26 24 22 29 29 H 1.48496 * 109.46868 * 330.00237 * 26 24 22 30 30 H 1.09000 * 109.47479 * 181.01617 * 1 2 3 31 31 H 1.09003 * 109.47170 * 301.01498 * 1 2 3 32 32 H 1.09002 * 109.47458 * 61.01333 * 1 2 3 33 33 H 0.97005 * 119.99905 * 19.97312 * 6 4 2 34 34 H 1.09003 * 109.47361 * 300.00351 * 9 7 6 35 35 H 1.08996 * 109.46781 * 60.00141 * 9 7 6 36 36 H 1.09003 * 109.46974 * 300.00190 * 10 9 7 37 37 H 1.08993 * 109.47282 * 59.99715 * 10 9 7 38 38 H 1.09003 * 109.47060 * 299.99726 * 11 10 9 39 39 H 1.09005 * 109.47303 * 59.99701 * 11 10 9 40 40 H 1.08004 * 119.64958 * 0.02562 * 13 12 11 41 41 H 1.07994 * 120.02704 * 179.97438 * 14 13 12 42 42 H 1.08000 * 120.36804 * 179.97438 * 15 14 13 43 43 H 1.08003 * 120.34614 * 180.02562 * 16 15 14 44 44 H 1.09002 * 111.00677 * 153.57697 * 19 4 2 45 45 H 1.09002 * 111.00564 * 277.38955 * 19 4 2 46 46 H 1.09008 * 110.36753 * 81.85112 * 20 19 4 47 47 H 1.09001 * 110.37094 * 204.16995 * 20 19 4 48 48 H 0.97004 * 119.99336 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0251 0.0000 4 6 2.0548 -0.7477 -1.2437 5 1 1.3074 -1.4455 -1.6215 6 7 2.4520 0.1991 -2.2886 7 6 2.5517 -0.2120 -3.5682 8 8 2.3121 -1.3659 -3.8548 9 6 2.9598 0.7623 -4.6431 10 6 2.9949 0.0455 -5.9944 11 6 3.4098 1.0345 -7.0856 12 7 3.4441 0.3481 -8.3794 13 6 2.3270 0.3125 -9.1500 14 6 2.3340 -0.3160 -10.3488 15 6 3.5042 -0.9384 -10.8057 16 6 4.6256 -0.9016 -10.0301 17 6 4.5849 -0.2356 -8.7932 18 8 5.5827 -0.1905 -8.0915 19 6 3.2900 -1.5101 -0.6954 20 6 2.8206 -1.8769 0.7345 21 7 2.0331 -0.7135 1.1829 22 6 1.8078 -0.3569 2.4858 23 1 1.2144 0.5166 2.7117 24 6 2.3413 -1.1190 3.5160 25 7 3.0633 -2.1846 3.2407 26 14 2.0346 -0.6322 5.2933 27 1 0.7963 -1.2914 5.7804 28 1 3.1848 -1.0602 6.1293 29 1 1.8788 0.8418 5.3829 30 1 -0.3634 -1.0275 0.0182 31 1 -0.3634 0.5295 0.8808 32 1 -0.3634 0.4980 -0.8989 33 1 2.6433 1.1221 -2.0595 34 1 2.2402 1.5800 -4.6846 35 1 3.9490 1.1599 -4.4165 36 1 3.7143 -0.7724 -5.9532 37 1 2.0056 -0.3519 -6.2208 38 1 2.6908 1.8527 -7.1269 39 1 4.3994 1.4315 -6.8590 40 1 1.4230 0.7908 -8.8029 41 1 1.4390 -0.3379 -10.9527 42 1 3.5174 -1.4421 -11.7610 43 1 5.5367 -1.3749 -10.3653 44 1 3.4887 -2.4061 -1.2833 45 1 4.1666 -0.8630 -0.6649 46 1 2.1969 -2.7706 0.7115 47 1 3.6793 -2.0294 1.3883 48 1 3.4363 -2.7168 3.9608 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001692383234.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:21:42 Heat of formation + Delta-G solvation = -17.107882 kcal Electronic energy + Delta-G solvation = -27967.998399 eV Core-core repulsion = 24023.947385 eV Total energy + Delta-G solvation = -3944.051014 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.63900 -39.74846 -37.66393 -37.17215 -35.81647 -34.01717 -33.05043 -31.97465 -30.39318 -30.19642 -28.87422 -27.62458 -24.94364 -24.18039 -24.00312 -23.32905 -21.95583 -20.52178 -20.12279 -19.54244 -17.99664 -17.63034 -16.91508 -16.75992 -16.54889 -15.95222 -15.87789 -15.68935 -14.96473 -14.71640 -14.49353 -14.14874 -13.95170 -13.78121 -13.46507 -13.08068 -12.79048 -12.67309 -12.49124 -12.21473 -12.19131 -12.11962 -11.90662 -11.87094 -11.58773 -11.15321 -11.09038 -10.88024 -10.84488 -10.53217 -10.45374 -10.41717 -10.20245 -10.10460 -9.78862 -9.67218 -9.53287 -8.69527 -8.61016 -8.30900 -6.89099 -5.66720 -3.09874 0.48765 1.54879 2.28106 2.78232 3.28406 3.38218 3.39842 3.44130 3.45617 4.16636 4.24302 4.45422 4.50515 4.54676 4.65527 4.74179 4.87895 4.90170 5.01457 5.10985 5.16974 5.27781 5.38014 5.40791 5.53571 5.62532 5.62918 5.71404 5.74966 5.81296 5.92340 5.97004 6.10327 6.17898 6.24321 6.28837 6.34660 6.53598 6.59329 6.72391 6.75358 6.84939 7.09819 7.51168 7.61010 7.72546 7.75400 7.84503 8.33181 8.41466 9.19012 9.80032 10.43908 11.36534 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.032923 B = 0.001854 C = 0.001814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.263420 B =15098.704833 C =15429.247679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.156 3.844 3 H 0.035 0.965 4 C 0.135 3.865 5 H 0.090 0.910 6 N -0.716 5.716 7 C 0.511 3.489 8 O -0.543 6.543 9 C -0.137 4.137 10 C -0.117 4.117 11 C 0.088 3.912 12 N -0.494 5.494 13 C 0.136 3.864 14 C -0.237 4.237 15 C -0.018 4.018 16 C -0.245 4.245 17 C 0.511 3.489 18 O -0.549 6.549 19 C -0.153 4.153 20 C 0.153 3.847 21 N -0.595 5.595 22 C -0.221 4.221 23 H 0.078 0.922 24 C -0.011 4.011 25 N -0.920 5.920 26 Si 0.915 3.085 27 H -0.289 1.289 28 H -0.290 1.290 29 H -0.282 1.282 30 H 0.051 0.949 31 H 0.054 0.946 32 H 0.037 0.963 33 H 0.398 0.602 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.092 0.908 39 H 0.102 0.898 40 H 0.162 0.838 41 H 0.144 0.856 42 H 0.133 0.867 43 H 0.147 0.853 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.014 0.986 47 H 0.109 0.891 48 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.878 8.746 -27.260 28.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.048 3.952 3 H 0.053 0.947 4 C 0.031 3.969 5 H 0.108 0.892 6 N -0.367 5.367 7 C 0.297 3.703 8 O -0.421 6.421 9 C -0.178 4.178 10 C -0.156 4.156 11 C -0.033 4.033 12 N -0.204 5.204 13 C 0.009 3.991 14 C -0.261 4.261 15 C -0.039 4.039 16 C -0.267 4.267 17 C 0.313 3.687 18 O -0.431 6.431 19 C -0.193 4.193 20 C 0.028 3.972 21 N -0.320 5.320 22 C -0.349 4.349 23 H 0.095 0.905 24 C -0.207 4.207 25 N -0.568 5.568 26 Si 0.745 3.255 27 H -0.216 1.216 28 H -0.217 1.217 29 H -0.207 1.207 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.232 0.768 34 H 0.113 0.887 35 H 0.115 0.885 36 H 0.099 0.901 37 H 0.094 0.906 38 H 0.111 0.889 39 H 0.121 0.879 40 H 0.179 0.821 41 H 0.162 0.838 42 H 0.151 0.849 43 H 0.165 0.835 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.032 0.968 47 H 0.127 0.873 48 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.330 7.886 -26.723 27.960 hybrid contribution -0.305 0.598 0.980 1.188 sum -2.634 8.484 -25.743 27.233 Atomic orbital electron populations 1.22244 0.97948 1.01423 0.99859 1.20974 0.92528 0.94766 0.86976 0.94716 1.22134 0.97597 0.90800 0.86402 0.89187 1.46099 1.69407 1.13965 1.07199 1.20469 0.77380 0.89046 0.83441 1.90709 1.49788 1.19329 1.82232 1.21552 1.04008 0.98679 0.93569 1.21629 1.03636 0.98430 0.91882 1.22095 1.05062 0.95181 0.80965 1.45572 1.10869 1.45705 1.18265 1.21998 0.90264 0.95677 0.91175 1.20661 1.00472 1.07076 0.97853 1.21447 0.91815 0.92272 0.98416 1.22158 1.01274 1.07602 0.95648 1.17200 0.82374 0.80847 0.88306 1.90984 1.32859 1.61737 1.57543 1.23390 0.96737 0.99404 0.99722 1.21962 0.97352 0.88376 0.89546 1.44501 1.59007 1.28462 1.00059 1.19012 1.27065 1.08333 0.80505 0.90466 1.24805 1.00345 0.97416 0.98093 1.69807 1.38883 1.17949 1.30207 0.86075 0.77247 0.77695 0.84472 1.21650 1.21661 1.20727 0.92948 0.92718 0.94379 0.76806 0.88718 0.88465 0.90064 0.90600 0.88923 0.87925 0.82096 0.83805 0.84877 0.83535 0.92021 0.92034 0.96776 0.87334 0.93672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.82 9.14 37.16 0.34 -2.48 16 2 C 0.16 3.08 3.47 -66.96 -0.23 2.85 16 3 H 0.04 0.66 7.69 -51.93 -0.40 0.27 16 4 C 0.14 2.44 2.76 -66.10 -0.18 2.26 16 5 H 0.09 1.76 7.41 -51.93 -0.38 1.37 16 6 N -0.72 -10.04 5.20 -52.03 -0.27 -10.31 16 7 C 0.51 7.10 7.83 -10.98 -0.09 7.01 16 8 O -0.54 -9.92 15.71 5.56 0.09 -9.83 16 9 C -0.14 -1.20 5.70 -27.88 -0.16 -1.36 16 10 C -0.12 -1.11 4.83 -26.73 -0.13 -1.24 16 11 C 0.09 0.64 5.34 -4.04 -0.02 0.62 16 12 N -0.49 -4.19 2.58 -119.77 -0.31 -4.50 16 13 C 0.14 0.74 10.28 -16.84 -0.17 0.57 16 14 C -0.24 -1.19 10.01 -39.88 -0.40 -1.59 16 15 C -0.02 -0.11 10.10 -39.51 -0.40 -0.51 16 16 C -0.25 -2.22 9.99 -39.38 -0.39 -2.62 16 17 C 0.51 5.97 7.41 -15.44 -0.11 5.85 16 18 O -0.55 -8.64 16.63 4.86 0.08 -8.56 16 19 C -0.15 -3.09 6.76 -24.58 -0.17 -3.26 16 20 C 0.15 3.75 5.89 -2.50 -0.01 3.74 16 21 N -0.60 -14.77 3.13 -162.55 -0.51 -15.28 16 22 C -0.22 -5.98 9.89 -15.06 -0.15 -6.13 16 23 H 0.08 2.01 7.83 -52.49 -0.41 1.60 16 24 C -0.01 -0.30 5.49 -17.43 -0.10 -0.40 16 25 N -0.92 -26.70 10.09 55.49 0.56 -26.14 16 26 Si 0.91 21.85 29.55 -169.99 -5.02 16.83 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 1.02 8.05 -51.93 -0.42 0.61 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.40 4.47 8.31 -40.82 -0.34 4.14 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.08 1.06 8.10 -51.93 -0.42 0.64 16 37 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 38 H 0.09 0.35 8.01 -51.93 -0.42 -0.07 16 39 H 0.10 0.86 7.38 -51.93 -0.38 0.48 16 40 H 0.16 0.33 8.04 -52.48 -0.42 -0.10 16 41 H 0.14 0.35 8.06 -52.49 -0.42 -0.08 16 42 H 0.13 0.45 8.06 -52.49 -0.42 0.03 16 43 H 0.15 1.22 8.06 -52.48 -0.42 0.79 16 44 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 46 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 47 H 0.11 2.99 5.88 -51.93 -0.31 2.68 16 48 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 393.37 15.07 5.93 5.93 Total: -1.00 -36.10 393.37 -9.51 -45.61 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: -7.68 Total: 2.94 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -2.38 Total: 3.32 kcal Atomic # 7 Polarization: -55.71 SS G_CDS: -0.53 Total: -56.24 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.17 Total: -18.38 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.10 -9.51 -45.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001692383234.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.504 kcal (2) G-P(sol) polarization free energy of solvation -36.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds