Wall clock time and date at job start Tue Mar 31 2020 17:46:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.89030 * 2 1 4 4 C 1.55127 * 110.90659 * 124.10112 * 2 1 3 5 5 N 1.47421 * 104.72333 * 155.27376 * 4 2 1 6 6 C 1.34775 * 125.64797 * 155.81779 * 5 4 2 7 7 O 1.21280 * 119.99930 * 179.69412 * 6 5 4 8 8 C 1.50697 * 119.99971 * 359.68940 * 6 5 4 9 9 O 1.42902 * 109.47205 * 180.02562 * 8 6 5 10 10 C 1.42898 * 114.00186 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47171 * 180.02562 * 10 9 8 12 12 C 1.38650 * 120.78792 * 269.71759 * 11 10 9 13 13 C 1.38207 * 119.16129 * 179.79528 * 12 11 10 14 14 N 1.31868 * 120.76474 * 0.49389 * 13 12 11 15 15 C 1.31874 * 121.72157 * 359.73831 * 14 13 12 16 16 C 1.38199 * 120.77057 * 0.02562 * 15 14 13 17 17 C 1.47024 * 108.70497 * 335.55055 * 5 4 2 18 18 C 1.54323 * 107.26928 * 1.28769 * 17 5 4 19 19 H 1.08999 * 110.72343 * 263.65149 * 18 17 5 20 20 C 1.53003 * 110.71980 * 140.55377 * 18 17 5 21 21 N 1.46499 * 109.47128 * 66.45483 * 20 18 17 22 22 C 1.36928 * 120.00186 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00531 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00551 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99407 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47462 * 89.99943 * 26 24 22 28 28 H 1.48501 * 109.46934 * 209.99861 * 26 24 22 29 29 H 1.48503 * 109.47325 * 329.99750 * 26 24 22 30 30 H 1.09002 * 109.47064 * 183.87622 * 1 2 3 31 31 H 1.08993 * 109.47053 * 303.87972 * 1 2 3 32 32 H 1.09003 * 109.46902 * 63.87818 * 1 2 3 33 33 H 1.09002 * 110.49517 * 36.42906 * 4 2 1 34 34 H 1.08998 * 110.34042 * 274.03510 * 4 2 1 35 35 H 1.09001 * 109.47017 * 60.00358 * 8 6 5 36 36 H 1.08999 * 109.47472 * 300.00035 * 8 6 5 37 37 H 1.09002 * 109.47259 * 300.00293 * 10 9 8 38 38 H 1.09001 * 109.47074 * 60.00315 * 10 9 8 39 39 H 1.07998 * 120.42060 * 0.02562 * 12 11 10 40 40 H 1.07997 * 119.61581 * 180.20726 * 13 12 11 41 41 H 1.07998 * 119.61429 * 180.02562 * 15 14 13 42 42 H 1.07991 * 120.42226 * 179.97438 * 16 15 14 43 43 H 1.08994 * 109.88294 * 120.70356 * 17 5 4 44 44 H 1.08992 * 109.88423 * 241.71357 * 17 5 4 45 45 H 1.08999 * 109.47059 * 186.45478 * 20 18 17 46 46 H 1.08996 * 109.47244 * 306.44946 * 20 18 17 47 47 H 0.97005 * 119.99688 * 359.97438 * 21 20 18 48 48 H 0.96997 * 119.99626 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0836 -0.8125 1.2000 5 7 3.4271 -1.2434 0.7727 6 6 4.4476 -1.5624 1.5933 7 8 5.5126 -1.9108 1.1293 8 6 4.2654 -1.4859 3.0872 9 8 5.4800 -1.8688 3.7355 10 6 5.4144 -1.8301 5.1625 11 6 6.7426 -2.2497 5.7379 12 6 7.0016 -3.5805 6.0284 13 6 8.2327 -3.9284 6.5512 14 7 9.1509 -3.0107 6.7829 15 6 8.9376 -1.7354 6.5233 16 6 7.7324 -1.3134 5.9950 17 6 3.4674 -1.2739 -0.6966 18 6 2.0862 -0.8075 -1.2026 19 1 1.4478 -1.6626 -1.4247 20 6 2.2350 0.0886 -2.4338 21 7 2.7615 -0.6997 -3.5508 22 6 2.9788 -0.1060 -4.7654 23 1 2.7624 0.9436 -4.8999 24 6 3.4781 -0.8528 -5.8237 25 7 3.6874 -0.2820 -6.9910 26 14 3.8531 -2.6679 -5.5908 27 1 2.6466 -3.4688 -5.9196 28 1 4.9686 -3.0620 -6.4884 29 1 4.2423 -2.9159 -4.1793 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5728 0.8531 32 1 -0.3633 0.4525 -0.9227 33 1 1.4523 -1.6788 1.3980 34 1 2.1516 -0.1811 2.0859 35 1 3.4635 -2.1592 3.3904 36 1 4.0091 -0.4650 3.3703 37 1 5.1818 -0.8162 5.4881 38 1 4.6366 -2.5105 5.5091 39 1 6.2521 -4.3361 5.8448 40 1 8.4435 -4.9632 6.7770 41 1 9.7139 -1.0125 6.7260 42 1 7.5636 -0.2676 5.7849 43 1 4.2426 -0.5994 -1.0603 44 1 3.6678 -2.2884 -1.0410 45 1 1.2619 0.4981 -2.7050 46 1 2.9223 0.9041 -2.2088 47 1 2.9562 -1.6423 -3.4299 48 1 4.0361 -0.8040 -7.7305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699972755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:46 Heat of formation + Delta-G solvation = -25.384313 kcal Electronic energy + Delta-G solvation = -27644.705194 eV Core-core repulsion = 23700.295286 eV Total energy + Delta-G solvation = -3944.409907 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.60163 -40.26916 -38.58171 -37.45936 -34.89416 -33.63294 -33.02886 -31.60076 -31.58832 -30.08507 -28.63752 -26.89335 -26.45569 -25.17717 -23.86668 -22.85945 -22.44386 -21.14756 -20.24183 -19.54268 -17.88569 -17.52660 -17.18727 -17.08932 -16.65491 -16.33128 -15.98194 -15.87964 -15.16472 -14.69091 -14.52783 -14.17636 -14.12592 -14.02997 -13.97179 -13.65710 -13.21623 -13.16591 -12.79948 -12.62583 -12.56552 -12.29469 -12.15548 -12.05552 -11.93683 -11.56423 -11.51522 -10.99680 -10.73524 -10.59543 -10.37221 -10.22046 -10.21240 -10.12561 -9.87927 -9.81872 -9.59117 -9.53062 -8.91063 -8.71457 -7.25229 -5.77164 -3.13310 0.71453 0.75691 2.49353 2.49568 3.31333 3.38893 3.42583 3.47328 3.67773 4.08494 4.14315 4.24555 4.32079 4.38227 4.58851 4.59560 4.60226 4.66986 4.70486 4.75250 4.80152 4.86108 4.91002 5.13087 5.18777 5.21545 5.30906 5.34875 5.38605 5.52528 5.53828 5.56648 5.61543 5.74020 5.81498 5.87619 5.96202 6.06359 6.08994 6.18042 6.24748 6.28819 6.55472 6.56974 6.68213 7.39023 7.57980 7.97516 8.07170 8.41448 9.19900 9.92379 10.11156 11.41055 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.002152 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.203054 B =13008.655810 C =14321.856081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.097 4.097 3 H 0.090 0.910 4 C 0.100 3.900 5 N -0.618 5.618 6 C 0.525 3.475 7 O -0.515 6.515 8 C 0.050 3.950 9 O -0.355 6.355 10 C 0.100 3.900 11 C -0.045 4.045 12 C -0.151 4.151 13 C 0.096 3.904 14 N -0.482 5.482 15 C 0.096 3.904 16 C -0.150 4.150 17 C 0.115 3.885 18 C -0.105 4.105 19 H 0.086 0.914 20 C 0.169 3.831 21 N -0.756 5.756 22 C -0.246 4.246 23 H 0.090 0.910 24 C 0.005 3.995 25 N -0.933 5.933 26 Si 0.883 3.117 27 H -0.284 1.284 28 H -0.290 1.290 29 H -0.276 1.276 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.067 0.933 33 H 0.072 0.928 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.081 0.919 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.137 0.863 40 H 0.158 0.842 41 H 0.158 0.842 42 H 0.137 0.863 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.034 0.966 46 H 0.029 0.971 47 H 0.361 0.639 48 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.071 -2.201 32.042 32.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.117 4.117 3 H 0.108 0.892 4 C -0.023 4.023 5 N -0.354 5.354 6 C 0.311 3.689 7 O -0.390 6.390 8 C -0.029 4.029 9 O -0.273 6.273 10 C 0.023 3.977 11 C -0.054 4.054 12 C -0.170 4.170 13 C -0.061 4.061 14 N -0.191 5.191 15 C -0.060 4.060 16 C -0.170 4.170 17 C -0.007 4.007 18 C -0.124 4.124 19 H 0.105 0.895 20 C 0.041 3.959 21 N -0.402 5.402 22 C -0.375 4.375 23 H 0.108 0.892 24 C -0.191 4.191 25 N -0.581 5.581 26 Si 0.713 3.287 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.202 1.202 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.086 0.914 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.098 0.902 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.084 0.916 39 H 0.154 0.846 40 H 0.175 0.825 41 H 0.176 0.824 42 H 0.155 0.845 43 H 0.097 0.903 44 H 0.085 0.915 45 H 0.052 0.948 46 H 0.047 0.953 47 H 0.194 0.806 48 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.414 -2.550 31.908 32.041 hybrid contribution -0.804 -0.974 -0.277 1.293 sum -2.218 -3.524 31.630 31.903 Atomic orbital electron populations 1.21706 0.93478 1.02114 1.02486 1.22397 0.96352 0.99564 0.93359 0.89169 1.22544 0.83297 0.98360 0.98068 1.48467 1.11985 1.67360 1.07614 1.19773 0.83326 0.78177 0.87584 1.90779 1.25562 1.45569 1.77067 1.22197 0.88366 1.01179 0.91199 1.88105 1.33015 1.89045 1.17144 1.21368 0.93984 1.00931 0.81401 1.19948 0.95397 0.93816 0.96208 1.22100 0.99093 0.96152 0.99696 1.22795 0.89132 0.99281 0.94855 1.67680 1.33407 1.02163 1.15900 1.22801 0.95823 0.92725 0.94690 1.22105 0.94227 1.00990 0.99661 1.22088 0.98638 1.02300 0.77639 1.22592 0.94972 0.99404 0.95458 0.89529 1.20614 0.97300 0.92749 0.85188 1.42712 1.79463 1.08781 1.09228 1.19026 1.36467 0.96075 0.85965 0.89191 1.24673 1.01133 0.97618 0.95629 1.69698 1.51186 1.35487 1.01710 0.86570 0.77952 0.86816 0.77362 1.21075 1.21656 1.20211 0.92410 0.92515 0.91383 0.91019 0.90788 0.90163 0.90102 0.91589 0.91622 0.84551 0.82479 0.82449 0.84501 0.90272 0.91454 0.94845 0.95299 0.80641 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.31 37.16 0.35 -0.78 16 2 C -0.10 -0.96 3.10 -88.35 -0.27 -1.23 16 3 H 0.09 0.90 8.05 -51.93 -0.42 0.49 16 4 C 0.10 0.86 6.16 -2.41 -0.01 0.84 16 5 N -0.62 -7.90 3.32 -170.39 -0.57 -8.46 16 6 C 0.52 7.45 7.93 -10.99 -0.09 7.36 16 7 O -0.52 -10.09 16.83 -14.35 -0.24 -10.34 16 8 C 0.05 0.47 5.42 36.00 0.20 0.66 16 9 O -0.36 -4.07 9.86 -55.14 -0.54 -4.61 16 10 C 0.10 0.73 6.11 36.01 0.22 0.95 16 11 C -0.05 -0.39 5.55 -104.32 -0.58 -0.97 16 12 C -0.15 -1.22 9.82 -39.44 -0.39 -1.60 16 13 C 0.10 0.82 11.18 -17.55 -0.20 0.62 16 14 N -0.48 -4.89 10.36 -13.25 -0.14 -5.02 16 15 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 16 C -0.15 -1.22 9.82 -39.44 -0.39 -1.61 16 17 C 0.11 1.79 6.15 -3.06 -0.02 1.77 16 18 C -0.10 -1.45 2.48 -88.78 -0.22 -1.67 16 19 H 0.09 1.17 8.04 -51.93 -0.42 0.76 16 20 C 0.17 3.05 5.58 -4.04 -0.02 3.03 16 21 N -0.76 -17.64 5.25 -59.91 -0.31 -17.96 16 22 C -0.25 -6.94 10.47 -15.06 -0.16 -7.10 16 23 H 0.09 2.71 8.06 -52.48 -0.42 2.29 16 24 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 25 N -0.93 -29.52 13.97 55.49 0.78 -28.74 16 26 Si 0.88 22.47 27.74 -169.99 -4.71 17.76 16 27 H -0.28 -7.11 7.11 56.52 0.40 -6.70 16 28 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 29 H -0.28 -6.69 6.52 56.52 0.37 -6.32 16 30 H 0.06 0.44 8.07 -51.93 -0.42 0.02 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.52 7.99 -51.93 -0.41 0.10 16 34 H 0.07 0.44 7.48 -51.93 -0.39 0.05 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.53 7.85 -51.93 -0.41 0.12 16 37 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 38 H 0.07 0.34 8.10 -51.93 -0.42 -0.08 16 39 H 0.14 0.82 8.06 -52.49 -0.42 0.40 16 40 H 0.16 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.08 1.42 7.76 -51.93 -0.40 1.02 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.03 0.54 8.06 -51.93 -0.42 0.13 16 47 H 0.36 8.31 5.38 -40.82 -0.22 8.09 16 48 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 398.02 15.07 6.00 6.00 Total: -1.00 -37.88 398.02 -9.37 -47.24 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: -7.75 Total: 3.17 kcal Atomic # 6 Polarization: 2.84 SS G_CDS: -1.88 Total: 0.97 kcal Atomic # 7 Polarization: -59.95 SS G_CDS: -0.24 Total: -60.19 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: -0.79 Total: -14.95 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.71 Total: 17.76 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.88 -9.37 -47.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699972755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.860 kcal (2) G-P(sol) polarization free energy of solvation -37.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds