Wall clock time and date at job start Tue Mar 31 2020 17:46:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.89030 * 2 1 4 4 C 1.55127 * 110.90659 * 124.10112 * 2 1 3 5 5 N 1.47421 * 104.72333 * 155.27376 * 4 2 1 6 6 C 1.34775 * 125.64797 * 155.81779 * 5 4 2 7 7 O 1.21280 * 119.99930 * 179.69412 * 6 5 4 8 8 C 1.50697 * 119.99971 * 359.68940 * 6 5 4 9 9 O 1.42902 * 109.47205 * 180.02562 * 8 6 5 10 10 C 1.42898 * 114.00186 * 179.97438 * 9 8 6 11 11 C 1.50703 * 109.47171 * 180.02562 * 10 9 8 12 12 C 1.38650 * 120.78792 * 269.71759 * 11 10 9 13 13 C 1.38207 * 119.16129 * 179.79528 * 12 11 10 14 14 N 1.31868 * 120.76474 * 0.49389 * 13 12 11 15 15 C 1.31874 * 121.72157 * 359.73831 * 14 13 12 16 16 C 1.38199 * 120.77057 * 0.02562 * 15 14 13 17 17 C 1.47024 * 108.70497 * 335.55055 * 5 4 2 18 18 C 1.54323 * 107.26928 * 1.28769 * 17 5 4 19 19 H 1.08999 * 110.72343 * 263.65149 * 18 17 5 20 20 C 1.53003 * 110.71980 * 140.55377 * 18 17 5 21 21 N 1.46499 * 109.47128 * 66.45483 * 20 18 17 22 22 C 1.36928 * 120.00186 * 179.97438 * 21 20 18 23 23 H 1.08004 * 120.00299 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00531 * 179.97438 * 22 21 20 25 25 N 1.31617 * 120.00551 * 180.02562 * 24 22 21 26 26 Si 1.86801 * 119.99407 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47462 * 89.99943 * 26 24 22 28 28 H 1.48501 * 109.46934 * 209.99861 * 26 24 22 29 29 H 1.48503 * 109.47325 * 329.99750 * 26 24 22 30 30 H 1.09002 * 109.47064 * 183.87622 * 1 2 3 31 31 H 1.08993 * 109.47053 * 303.87972 * 1 2 3 32 32 H 1.09003 * 109.46902 * 63.87818 * 1 2 3 33 33 H 1.09002 * 110.49517 * 36.42906 * 4 2 1 34 34 H 1.08998 * 110.34042 * 274.03510 * 4 2 1 35 35 H 1.09001 * 109.47017 * 60.00358 * 8 6 5 36 36 H 1.08999 * 109.47472 * 300.00035 * 8 6 5 37 37 H 1.09002 * 109.47259 * 300.00293 * 10 9 8 38 38 H 1.09001 * 109.47074 * 60.00315 * 10 9 8 39 39 H 1.07998 * 120.42060 * 0.02562 * 12 11 10 40 40 H 1.07997 * 119.61581 * 180.20726 * 13 12 11 41 41 H 1.07998 * 119.61429 * 180.02562 * 15 14 13 42 42 H 1.07991 * 120.42226 * 179.97438 * 16 15 14 43 43 H 1.08994 * 109.88294 * 120.70356 * 17 5 4 44 44 H 1.08992 * 109.88423 * 241.71357 * 17 5 4 45 45 H 1.08999 * 109.47059 * 186.45478 * 20 18 17 46 46 H 1.08996 * 109.47244 * 306.44946 * 20 18 17 47 47 H 0.97005 * 119.99688 * 359.97438 * 21 20 18 48 48 H 0.96997 * 119.99626 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9187 1.0183 0.0000 4 6 2.0836 -0.8125 1.2000 5 7 3.4271 -1.2434 0.7727 6 6 4.4476 -1.5624 1.5933 7 8 5.5126 -1.9108 1.1293 8 6 4.2654 -1.4859 3.0872 9 8 5.4800 -1.8688 3.7355 10 6 5.4144 -1.8301 5.1625 11 6 6.7426 -2.2497 5.7379 12 6 7.0016 -3.5805 6.0284 13 6 8.2327 -3.9284 6.5512 14 7 9.1509 -3.0107 6.7829 15 6 8.9376 -1.7354 6.5233 16 6 7.7324 -1.3134 5.9950 17 6 3.4674 -1.2739 -0.6966 18 6 2.0862 -0.8075 -1.2026 19 1 1.4478 -1.6626 -1.4247 20 6 2.2350 0.0886 -2.4338 21 7 2.7615 -0.6997 -3.5508 22 6 2.9788 -0.1060 -4.7654 23 1 2.7624 0.9436 -4.8999 24 6 3.4781 -0.8528 -5.8237 25 7 3.6874 -0.2820 -6.9910 26 14 3.8531 -2.6679 -5.5908 27 1 2.6466 -3.4688 -5.9196 28 1 4.9686 -3.0620 -6.4884 29 1 4.2423 -2.9159 -4.1793 30 1 -0.3633 -1.0253 0.0695 31 1 -0.3633 0.5728 0.8531 32 1 -0.3633 0.4525 -0.9227 33 1 1.4523 -1.6788 1.3980 34 1 2.1516 -0.1811 2.0859 35 1 3.4635 -2.1592 3.3904 36 1 4.0091 -0.4650 3.3703 37 1 5.1818 -0.8162 5.4881 38 1 4.6366 -2.5105 5.5091 39 1 6.2521 -4.3361 5.8448 40 1 8.4435 -4.9632 6.7770 41 1 9.7139 -1.0125 6.7260 42 1 7.5636 -0.2676 5.7849 43 1 4.2426 -0.5994 -1.0603 44 1 3.6678 -2.2884 -1.0410 45 1 1.2619 0.4981 -2.7050 46 1 2.9223 0.9041 -2.2088 47 1 2.9562 -1.6423 -3.4299 48 1 4.0361 -0.8040 -7.7305 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699972755.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:45 Heat of formation + Delta-G solvation = -51.951360 kcal Electronic energy + Delta-G solvation = -27645.857227 eV Core-core repulsion = 23700.295286 eV Total energy + Delta-G solvation = -3945.561941 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.36652 -41.08785 -39.47810 -38.37944 -36.62918 -34.36912 -34.18163 -33.30292 -32.16907 -31.35417 -29.62122 -27.69210 -27.23350 -26.45916 -24.52643 -24.44535 -23.00927 -22.46867 -21.29829 -20.53190 -19.68366 -18.49936 -17.93568 -17.72556 -17.42397 -17.16115 -16.76210 -16.63698 -16.53974 -16.09213 -15.75523 -15.37364 -15.24316 -14.78053 -14.77256 -14.59700 -14.40989 -14.27889 -14.09206 -13.68469 -13.50550 -13.32783 -13.24417 -13.04167 -12.84293 -12.72296 -12.53771 -12.46998 -12.14323 -11.91504 -11.87561 -11.57220 -11.42183 -11.04153 -10.98987 -10.78746 -10.71862 -10.48942 -10.11256 -9.76738 -9.32863 -8.06251 -5.39139 0.11387 0.17569 1.33591 1.37215 1.43405 1.49026 1.63527 2.44173 2.65748 3.06824 3.24107 3.31124 3.45529 3.56464 3.61048 3.71892 3.77350 3.82141 3.98168 4.10439 4.13608 4.18297 4.21249 4.24532 4.38967 4.41733 4.44243 4.46756 4.55584 4.66796 4.68577 4.77027 4.83190 4.86340 4.92117 4.96746 5.01386 5.11997 5.18243 5.24260 5.31721 5.39225 5.55859 5.72754 5.73457 5.97533 6.17902 6.45595 6.98037 7.04489 7.06320 7.81088 7.98234 9.15206 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014503 B = 0.002152 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.203054 B =13008.655810 C =14321.856081 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.089 4.089 3 H 0.088 0.912 4 C 0.100 3.900 5 N -0.615 5.615 6 C 0.513 3.487 7 O -0.586 6.586 8 C 0.059 3.941 9 O -0.396 6.396 10 C 0.099 3.901 11 C -0.062 4.062 12 C -0.157 4.157 13 C 0.081 3.919 14 N -0.513 5.513 15 C 0.081 3.919 16 C -0.157 4.157 17 C 0.116 3.884 18 C -0.095 4.095 19 H 0.096 0.904 20 C 0.165 3.835 21 N -0.760 5.760 22 C -0.232 4.232 23 H 0.060 0.940 24 C -0.063 4.063 25 N -0.982 5.982 26 Si 0.951 3.049 27 H -0.271 1.271 28 H -0.297 1.297 29 H -0.261 1.261 30 H 0.067 0.933 31 H 0.083 0.917 32 H 0.052 0.948 33 H 0.098 0.902 34 H 0.115 0.885 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.155 0.845 40 H 0.176 0.824 41 H 0.176 0.824 42 H 0.154 0.846 43 H 0.042 0.958 44 H 0.045 0.955 45 H 0.041 0.959 46 H 0.019 0.981 47 H 0.364 0.636 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 -2.854 35.587 36.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.108 4.108 3 H 0.106 0.894 4 C -0.021 4.021 5 N -0.349 5.349 6 C 0.303 3.697 7 O -0.466 6.466 8 C -0.020 4.020 9 O -0.315 6.315 10 C 0.024 3.976 11 C -0.071 4.071 12 C -0.176 4.176 13 C -0.075 4.075 14 N -0.223 5.223 15 C -0.075 4.075 16 C -0.177 4.177 17 C -0.008 4.008 18 C -0.114 4.114 19 H 0.114 0.886 20 C 0.039 3.961 21 N -0.406 5.406 22 C -0.363 4.363 23 H 0.078 0.922 24 C -0.255 4.255 25 N -0.632 5.632 26 Si 0.778 3.222 27 H -0.197 1.197 28 H -0.224 1.224 29 H -0.186 1.186 30 H 0.086 0.914 31 H 0.102 0.898 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.133 0.867 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.173 0.827 40 H 0.193 0.807 41 H 0.193 0.807 42 H 0.172 0.828 43 H 0.061 0.939 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.037 0.963 47 H 0.197 0.803 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.041 -3.182 35.531 35.902 hybrid contribution -0.024 -0.648 -1.357 1.504 sum -4.065 -3.830 34.174 34.628 Atomic orbital electron populations 1.21689 0.91508 1.03148 1.02971 1.22412 0.97805 0.98988 0.91642 0.89380 1.22890 0.80857 0.99806 0.98527 1.48556 1.13659 1.66577 1.06124 1.20897 0.82290 0.76567 0.89940 1.90742 1.28395 1.48859 1.78612 1.22302 0.88601 1.04207 0.86864 1.88051 1.34516 1.89602 1.19376 1.21572 0.93703 1.03033 0.79326 1.20329 0.96423 0.94097 0.96225 1.22376 0.99315 0.96725 0.99219 1.23194 0.89358 1.00042 0.94921 1.67683 1.34456 1.03070 1.17052 1.23184 0.96783 0.92759 0.94794 1.22374 0.94037 1.02003 0.99288 1.21838 0.98578 1.00105 0.80231 1.22462 0.94404 0.99515 0.95005 0.88602 1.20796 0.96735 0.93012 0.85512 1.42773 1.79551 1.09269 1.08987 1.19044 1.34598 0.94907 0.87784 0.92211 1.25474 1.02093 1.02472 0.95446 1.69870 1.53237 1.37352 1.02779 0.85473 0.77784 0.81148 0.77774 1.19663 1.22421 1.18603 0.91436 0.89797 0.92878 0.88416 0.86694 0.86357 0.86483 0.89204 0.89102 0.82692 0.80675 0.80734 0.82796 0.93927 0.93602 0.94066 0.96280 0.80326 0.93328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.31 71.98 0.67 -0.91 16 2 C -0.09 -1.43 3.10 -9.32 -0.03 -1.46 16 3 H 0.09 1.49 8.05 -2.39 -0.02 1.47 16 4 C 0.10 1.21 6.16 86.93 0.54 1.74 16 5 N -0.61 -14.33 3.32 -811.39 -2.70 -17.03 16 6 C 0.51 13.73 7.93 87.66 0.69 14.42 16 7 O -0.59 -23.48 16.83 16.01 0.27 -23.21 16 8 C 0.06 0.85 5.42 71.24 0.39 1.23 16 9 O -0.40 -8.03 9.86 -129.94 -1.28 -9.31 16 10 C 0.10 1.10 6.11 71.24 0.44 1.53 16 11 C -0.06 -0.96 5.55 -19.67 -0.11 -1.07 16 12 C -0.16 -2.33 9.82 22.36 0.22 -2.11 16 13 C 0.08 1.34 11.18 84.68 0.95 2.29 16 14 N -0.51 -10.35 10.36 -195.85 -2.03 -12.38 16 15 C 0.08 1.36 11.18 84.68 0.95 2.31 16 16 C -0.16 -2.38 9.82 22.36 0.22 -2.16 16 17 C 0.12 3.58 6.15 86.73 0.53 4.11 16 18 C -0.09 -2.46 2.48 -9.60 -0.02 -2.48 16 19 H 0.10 2.36 8.04 -2.39 -0.02 2.34 16 20 C 0.17 5.95 5.58 86.38 0.48 6.43 16 21 N -0.76 -35.73 5.25 -343.45 -1.80 -37.53 16 22 C -0.23 -13.46 10.47 84.04 0.88 -12.58 16 23 H 0.06 3.76 8.06 -2.91 -0.02 3.73 16 24 C -0.06 -3.82 5.50 84.86 0.47 -3.35 16 25 N -0.98 -64.09 13.97 21.65 0.30 -63.78 16 26 Si 0.95 47.19 27.74 68.60 1.90 49.10 16 27 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 28 H -0.30 -15.04 7.11 99.48 0.71 -14.34 16 29 H -0.26 -12.13 6.52 99.48 0.65 -11.48 16 30 H 0.07 0.69 8.07 -2.39 -0.02 0.67 16 31 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.05 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.10 0.79 7.99 -2.39 -0.02 0.77 16 34 H 0.11 0.56 7.48 -2.39 -0.02 0.54 16 35 H 0.12 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.12 0.84 7.85 -2.39 -0.02 0.82 16 37 H 0.09 0.54 8.10 -2.39 -0.02 0.52 16 38 H 0.09 0.52 8.10 -2.39 -0.02 0.50 16 39 H 0.16 1.56 8.06 -2.91 -0.02 1.53 16 40 H 0.18 1.95 8.06 -2.91 -0.02 1.93 16 41 H 0.18 2.00 8.06 -2.91 -0.02 1.98 16 42 H 0.15 1.63 8.06 -2.91 -0.02 1.61 16 43 H 0.04 1.60 7.76 -2.39 -0.02 1.59 16 44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.02 0.73 8.06 -2.39 -0.02 0.71 16 47 H 0.36 16.62 5.38 -92.70 -0.50 16.12 16 48 H 0.26 16.05 8.31 -92.71 -0.77 15.28 16 Total: -1.00 -89.18 398.02 2.31 -86.87 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: 0.39 Total: 19.34 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 7.26 Total: 7.95 kcal Atomic # 7 Polarization: -124.50 SS G_CDS: -6.23 Total: -130.73 kcal Atomic # 8 Polarization: -31.51 SS G_CDS: -1.01 Total: -32.53 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 1.90 Total: 49.10 kcal Total: -89.18 2.31 -86.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699972755.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.917 kcal (2) G-P(sol) polarization free energy of solvation -89.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds