Wall clock time and date at job start Tue Mar 31 2020 17:44:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.63892 * 2 1 4 4 C 1.54322 * 110.72230 * 236.85683 * 2 1 3 5 5 N 1.47020 * 107.27436 * 263.83008 * 4 2 1 6 6 C 1.34772 * 125.64838 * 181.02343 * 5 4 2 7 7 O 1.21618 * 119.99565 * 180.02562 * 6 5 4 8 8 C 1.47416 * 120.00415 * 0.02562 * 6 5 4 9 9 C 1.36091 * 126.45460 * 179.97438 * 8 6 5 10 10 O 1.34247 * 106.95153 * 180.02562 * 9 8 6 11 11 C 1.34053 * 108.22943 * 0.02562 * 10 9 8 12 12 C 1.50698 * 125.37883 * 180.02562 * 11 10 9 13 13 C 1.53778 * 113.61632 * 39.09522 * 12 11 10 14 14 C 1.53955 * 87.02337 * 220.04959 * 13 12 11 15 15 C 1.53782 * 113.61604 * 301.48663 * 12 11 10 16 16 N 1.29933 * 109.24350 * 359.97438 * 11 10 9 17 17 C 1.47429 * 108.70031 * 1.28708 * 5 4 2 18 18 C 1.55129 * 104.72390 * 335.55275 * 17 5 4 19 19 H 1.08999 * 111.19188 * 279.19141 * 18 17 5 20 20 C 1.52993 * 110.90610 * 155.27538 * 18 17 5 21 21 N 1.46495 * 109.47578 * 72.97477 * 20 18 17 22 22 C 1.36930 * 120.00636 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99823 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00519 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99621 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00224 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47235 * 60.00439 * 26 24 22 28 28 H 1.48500 * 109.47113 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47418 * 300.00366 * 26 24 22 30 30 H 1.08999 * 109.46888 * 181.68402 * 1 2 3 31 31 H 1.08997 * 109.47607 * 301.68663 * 1 2 3 32 32 H 1.09004 * 109.46950 * 61.69012 * 1 2 3 33 33 H 1.08999 * 109.87893 * 144.41470 * 4 2 1 34 34 H 1.09002 * 110.01183 * 23.31987 * 4 2 1 35 35 H 1.08006 * 126.52112 * 0.04428 * 9 8 6 36 36 H 1.08998 * 112.85221 * 170.29208 * 12 11 10 37 37 H 1.09003 * 113.61716 * 334.56790 * 13 12 11 38 38 H 1.09004 * 113.61964 * 105.46974 * 13 12 11 39 39 H 1.09003 * 113.53314 * 270.81557 * 14 13 12 40 40 H 1.08997 * 113.66937 * 139.93094 * 14 13 12 41 41 H 1.09002 * 113.61560 * 254.53407 * 15 12 11 42 42 H 1.09003 * 113.61212 * 25.43282 * 15 12 11 43 43 H 1.09006 * 110.36318 * 94.48434 * 17 5 4 44 44 H 1.08997 * 110.36411 * 216.80376 * 17 5 4 45 45 H 1.09002 * 109.47279 * 192.98044 * 20 18 17 46 46 H 1.09001 * 109.47468 * 312.97366 * 20 18 17 47 47 H 0.97008 * 119.99721 * 0.02562 * 21 20 18 48 48 H 0.97001 * 120.00081 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 2.3717 -2.1519 -0.7426 6 6 2.8851 -3.1452 -1.4951 7 8 3.0891 -4.2381 -1.0021 8 6 3.1993 -2.9070 -2.9155 9 6 3.7189 -3.8099 -3.7912 10 8 3.8471 -3.1820 -4.9708 11 6 3.4165 -1.9211 -4.8237 12 6 3.3891 -0.8762 -5.9093 13 6 2.9734 -1.4265 -7.2837 14 6 4.0583 -0.5158 -7.8870 15 6 4.7691 -0.5917 -6.5254 16 7 3.0253 -1.7425 -3.5976 17 6 2.0075 -2.2536 0.6823 18 6 2.0789 -0.7975 1.2125 19 1 3.1061 -0.5098 1.4367 20 6 1.1815 -0.6183 2.4385 21 7 1.7912 -1.2848 3.5918 22 6 1.1641 -1.2578 4.8088 23 1 0.2197 -0.7454 4.9184 24 6 1.7416 -1.8899 5.9014 25 7 2.8922 -2.5148 5.7678 26 14 0.8857 -1.8536 7.5614 27 1 -0.4505 -2.4906 7.4435 28 1 1.7022 -2.5953 8.5556 29 1 0.7253 -0.4455 8.0050 30 1 -0.3633 -1.0272 0.0302 31 1 -0.3634 0.5398 0.8744 32 1 -0.3633 0.4874 -0.9048 33 1 2.9869 -0.3180 -1.5780 34 1 1.3284 -0.8224 -2.0010 35 1 3.9785 -4.8363 -3.5777 36 1 2.8476 0.0235 -5.6172 37 1 3.1774 -2.4900 -7.4082 38 1 1.9597 -1.1519 -7.5757 39 1 3.6990 0.4825 -8.1369 40 1 4.6183 -0.9807 -8.6984 41 1 5.2031 0.3558 -6.2059 42 1 5.4650 -1.4266 -6.4421 43 1 0.9973 -2.6494 0.7884 44 1 2.7207 -2.8852 1.2119 45 1 1.0661 0.4444 2.6521 46 1 0.2036 -1.0571 2.2403 47 1 2.6396 -1.7448 3.4935 48 1 3.2960 -2.9562 6.5313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699973562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:54 Heat of formation + Delta-G solvation = 20.975253 kcal Electronic energy + Delta-G solvation = -28540.436667 eV Core-core repulsion = 24598.037061 eV Total energy + Delta-G solvation = -3942.399606 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.70399 -40.00807 -39.10406 -37.89201 -35.15039 -34.54911 -32.71689 -31.11072 -30.96344 -28.97922 -26.75302 -26.43899 -26.21194 -25.78554 -23.97880 -22.76281 -21.95135 -21.59851 -20.44424 -19.23595 -19.07640 -17.87277 -17.10992 -17.05841 -16.70508 -16.14880 -15.85779 -15.76599 -15.21061 -14.80348 -14.52020 -13.93301 -13.78325 -13.46497 -13.34687 -13.18528 -13.09260 -12.94100 -12.85179 -12.55573 -12.35556 -12.20142 -11.68713 -11.57861 -11.52791 -11.47528 -11.07893 -11.03725 -11.00191 -10.89866 -10.79130 -10.42474 -10.34212 -10.26362 -10.07062 -9.95126 -9.63051 -9.23871 -8.82808 -8.45656 -6.88092 -5.71600 -3.00718 0.90522 1.78887 2.27215 2.97285 3.26838 3.47366 3.51363 3.52792 3.53434 3.97031 4.06233 4.28199 4.28978 4.51307 4.61856 4.63356 4.70660 4.91483 5.05238 5.06402 5.14351 5.18031 5.30971 5.36661 5.39418 5.40529 5.40945 5.51751 5.55449 5.61064 5.65121 5.71664 5.78854 5.85981 5.97139 6.01198 6.05215 6.12876 6.22894 6.26839 6.41185 6.46038 6.52796 6.74774 6.88906 7.25367 7.59946 7.73177 8.15830 8.46758 9.57688 10.15487 10.49767 11.51075 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.002228 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.559595 B =12561.891408 C =13237.356204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.088 0.912 4 C 0.119 3.881 5 N -0.599 5.599 6 C 0.609 3.391 7 O -0.537 6.537 8 C -0.061 4.061 9 C 0.008 3.992 10 O -0.195 6.195 11 C 0.203 3.797 12 C -0.019 4.019 13 C -0.133 4.133 14 C -0.139 4.139 15 C -0.131 4.131 16 N -0.453 5.453 17 C 0.117 3.883 18 C -0.101 4.101 19 H 0.085 0.915 20 C 0.166 3.834 21 N -0.733 5.733 22 C -0.240 4.240 23 H 0.070 0.930 24 C -0.014 4.014 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.286 1.286 28 H -0.291 1.291 29 H -0.286 1.286 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.231 0.769 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.075 0.925 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.073 0.927 44 H 0.084 0.916 45 H 0.024 0.976 46 H 0.025 0.975 47 H 0.384 0.616 48 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.342 5.126 -30.699 31.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.120 4.120 3 H 0.106 0.894 4 C -0.003 4.003 5 N -0.331 5.331 6 C 0.396 3.604 7 O -0.415 6.415 8 C -0.181 4.181 9 C -0.066 4.066 10 O -0.081 6.081 11 C -0.006 4.006 12 C -0.038 4.038 13 C -0.171 4.171 14 C -0.177 4.177 15 C -0.169 4.169 16 N -0.182 5.182 17 C -0.005 4.005 18 C -0.121 4.121 19 H 0.104 0.896 20 C 0.038 3.962 21 N -0.378 5.378 22 C -0.371 4.371 23 H 0.088 0.912 24 C -0.210 4.210 25 N -0.581 5.581 26 Si 0.738 3.262 27 H -0.213 1.213 28 H -0.217 1.217 29 H -0.213 1.213 30 H 0.075 0.925 31 H 0.085 0.915 32 H 0.071 0.929 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.247 0.753 36 H 0.151 0.849 37 H 0.108 0.892 38 H 0.098 0.902 39 H 0.106 0.894 40 H 0.094 0.906 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.091 0.909 44 H 0.103 0.897 45 H 0.042 0.958 46 H 0.043 0.957 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 1.119 5.075 -30.097 30.542 hybrid contribution 0.130 -0.869 0.836 1.213 sum 1.249 4.206 -29.261 29.588 Atomic orbital electron populations 1.21830 0.94194 1.02254 1.01717 1.22260 0.96569 0.99245 0.93956 0.89375 1.22139 1.00659 0.81232 0.96301 1.48287 1.61079 1.11718 1.11974 1.16348 0.77777 0.83516 0.82776 1.90855 1.54723 1.23462 1.72449 1.21794 1.08613 0.90869 0.96859 1.25277 1.00235 0.99692 0.81357 1.84325 1.64662 1.24344 1.34790 1.26111 0.96976 0.83361 0.94134 1.21306 1.00453 0.93744 0.88326 1.23058 1.00147 1.00688 0.93214 1.22852 0.97455 1.00469 0.96897 1.23024 0.94990 1.03162 0.95729 1.70913 1.19120 1.24919 1.03285 1.22443 1.01336 0.98117 0.78557 1.22654 1.01180 0.93344 0.94881 0.89646 1.20633 0.94155 0.95935 0.85478 1.42388 1.25637 1.64460 1.05288 1.19160 1.03006 1.28329 0.86627 0.91240 1.24754 0.97339 1.00789 0.98136 1.69654 1.18125 1.39949 1.30348 0.86264 0.78526 0.77375 0.83984 1.21288 1.21729 1.21320 0.92476 0.91540 0.92944 0.91052 0.90989 0.75277 0.84910 0.89249 0.90224 0.89419 0.90592 0.90123 0.89418 0.90866 0.89738 0.95848 0.95688 0.78268 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 7.91 37.16 0.29 -1.43 16 2 C -0.10 -1.30 3.47 -88.78 -0.31 -1.61 16 3 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 4 C 0.12 1.57 5.10 -3.07 -0.02 1.55 16 5 N -0.60 -9.54 3.32 -171.65 -0.57 -10.11 16 6 C 0.61 10.16 7.85 -12.53 -0.10 10.06 16 7 O -0.54 -10.51 17.14 5.26 0.09 -10.42 16 8 C -0.06 -0.84 6.83 -83.02 -0.57 -1.40 16 9 C 0.01 0.09 11.95 29.96 0.36 0.45 16 10 O -0.20 -1.94 10.43 6.53 0.07 -1.87 16 11 C 0.20 2.00 7.32 -13.08 -0.10 1.90 16 12 C -0.02 -0.12 4.28 -90.96 -0.39 -0.51 16 13 C -0.13 -0.64 7.64 -25.83 -0.20 -0.83 16 14 C -0.14 -0.51 8.09 -25.83 -0.21 -0.72 16 15 C -0.13 -0.66 7.63 -25.92 -0.20 -0.85 16 16 N -0.45 -5.55 8.83 -7.65 -0.07 -5.62 16 17 C 0.12 2.05 6.01 -2.41 -0.01 2.04 16 18 C -0.10 -1.67 2.93 -88.35 -0.26 -1.93 16 19 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 20 C 0.17 3.28 4.54 -4.05 -0.02 3.27 16 21 N -0.73 -18.74 5.55 -59.91 -0.33 -19.07 16 22 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 23 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 24 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 25 N -0.93 -28.79 13.06 55.49 0.72 -28.07 16 26 Si 0.91 22.78 29.55 -169.99 -5.02 17.75 16 27 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 28 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 29 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 30 H 0.06 0.75 7.32 -51.93 -0.38 0.37 16 31 H 0.07 0.82 7.12 -51.93 -0.37 0.45 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.93 7.63 -51.93 -0.40 0.53 16 34 H 0.07 0.91 7.45 -51.93 -0.39 0.52 16 35 H 0.23 1.87 8.06 -52.48 -0.42 1.45 16 36 H 0.13 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.09 0.48 7.85 -51.93 -0.41 0.07 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.09 0.24 8.14 -51.93 -0.42 -0.18 16 40 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 41 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 42 H 0.09 0.49 8.09 -51.93 -0.42 0.07 16 43 H 0.07 1.32 7.46 -51.93 -0.39 0.93 16 44 H 0.08 1.69 8.03 -51.93 -0.42 1.27 16 45 H 0.02 0.47 8.05 -51.93 -0.42 0.05 16 46 H 0.03 0.50 6.94 -51.93 -0.36 0.14 16 47 H 0.38 10.41 7.67 -40.82 -0.31 10.10 16 48 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 389.20 15.07 5.87 5.87 Total: -1.00 -34.19 389.20 -8.82 -43.01 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -7.61 Total: 6.02 kcal Atomic # 6 Polarization: 4.48 SS G_CDS: -1.96 Total: 2.52 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: -0.25 Total: -62.88 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: 0.16 Total: -12.29 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.75 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -34.19 -8.82 -43.01 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699973562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.986 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds