Wall clock time and date at job start Tue Mar 31 2020 17:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 110.63892 * 2 1 4 4 C 1.54322 * 110.72230 * 236.85683 * 2 1 3 5 5 N 1.47020 * 107.27436 * 263.83008 * 4 2 1 6 6 C 1.34772 * 125.64838 * 181.02343 * 5 4 2 7 7 O 1.21618 * 119.99565 * 180.02562 * 6 5 4 8 8 C 1.47416 * 120.00415 * 0.02562 * 6 5 4 9 9 C 1.36091 * 126.45460 * 179.97438 * 8 6 5 10 10 O 1.34247 * 106.95153 * 180.02562 * 9 8 6 11 11 C 1.34053 * 108.22943 * 0.02562 * 10 9 8 12 12 C 1.50698 * 125.37883 * 180.02562 * 11 10 9 13 13 C 1.53778 * 113.61632 * 39.09522 * 12 11 10 14 14 C 1.53955 * 87.02337 * 220.04959 * 13 12 11 15 15 C 1.53782 * 113.61604 * 301.48663 * 12 11 10 16 16 N 1.29933 * 109.24350 * 359.97438 * 11 10 9 17 17 C 1.47429 * 108.70031 * 1.28708 * 5 4 2 18 18 C 1.55129 * 104.72390 * 335.55275 * 17 5 4 19 19 H 1.08999 * 111.19188 * 279.19141 * 18 17 5 20 20 C 1.52993 * 110.90610 * 155.27538 * 18 17 5 21 21 N 1.46495 * 109.47578 * 72.97477 * 20 18 17 22 22 C 1.36930 * 120.00636 * 179.97438 * 21 20 18 23 23 H 1.08004 * 119.99823 * 0.02562 * 22 21 20 24 24 C 1.38814 * 120.00519 * 179.97438 * 22 21 20 25 25 N 1.31621 * 119.99621 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00224 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.47235 * 60.00439 * 26 24 22 28 28 H 1.48500 * 109.47113 * 180.02562 * 26 24 22 29 29 H 1.48498 * 109.47418 * 300.00366 * 26 24 22 30 30 H 1.08999 * 109.46888 * 181.68402 * 1 2 3 31 31 H 1.08997 * 109.47607 * 301.68663 * 1 2 3 32 32 H 1.09004 * 109.46950 * 61.69012 * 1 2 3 33 33 H 1.08999 * 109.87893 * 144.41470 * 4 2 1 34 34 H 1.09002 * 110.01183 * 23.31987 * 4 2 1 35 35 H 1.08006 * 126.52112 * 0.04428 * 9 8 6 36 36 H 1.08998 * 112.85221 * 170.29208 * 12 11 10 37 37 H 1.09003 * 113.61716 * 334.56790 * 13 12 11 38 38 H 1.09004 * 113.61964 * 105.46974 * 13 12 11 39 39 H 1.09003 * 113.53314 * 270.81557 * 14 13 12 40 40 H 1.08997 * 113.66937 * 139.93094 * 14 13 12 41 41 H 1.09002 * 113.61560 * 254.53407 * 15 12 11 42 42 H 1.09003 * 113.61212 * 25.43282 * 15 12 11 43 43 H 1.09006 * 110.36318 * 94.48434 * 17 5 4 44 44 H 1.08997 * 110.36411 * 216.80376 * 17 5 4 45 45 H 1.09002 * 109.47279 * 192.98044 * 20 18 17 46 46 H 1.09001 * 109.47468 * 312.97366 * 20 18 17 47 47 H 0.97008 * 119.99721 * 0.02562 * 21 20 18 48 48 H 0.97001 * 120.00081 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0200 0.0000 4 6 2.0761 -0.7891 -1.2086 5 7 2.3717 -2.1519 -0.7426 6 6 2.8851 -3.1452 -1.4951 7 8 3.0891 -4.2381 -1.0021 8 6 3.1993 -2.9070 -2.9155 9 6 3.7189 -3.8099 -3.7912 10 8 3.8471 -3.1820 -4.9708 11 6 3.4165 -1.9211 -4.8237 12 6 3.3891 -0.8762 -5.9093 13 6 2.9734 -1.4265 -7.2837 14 6 4.0583 -0.5158 -7.8870 15 6 4.7691 -0.5917 -6.5254 16 7 3.0253 -1.7425 -3.5976 17 6 2.0075 -2.2536 0.6823 18 6 2.0789 -0.7975 1.2125 19 1 3.1061 -0.5098 1.4367 20 6 1.1815 -0.6183 2.4385 21 7 1.7912 -1.2848 3.5918 22 6 1.1641 -1.2578 4.8088 23 1 0.2197 -0.7454 4.9184 24 6 1.7416 -1.8899 5.9014 25 7 2.8922 -2.5148 5.7678 26 14 0.8857 -1.8536 7.5614 27 1 -0.4505 -2.4906 7.4435 28 1 1.7022 -2.5953 8.5556 29 1 0.7253 -0.4455 8.0050 30 1 -0.3633 -1.0272 0.0302 31 1 -0.3634 0.5398 0.8744 32 1 -0.3633 0.4874 -0.9048 33 1 2.9869 -0.3180 -1.5780 34 1 1.3284 -0.8224 -2.0010 35 1 3.9785 -4.8363 -3.5777 36 1 2.8476 0.0235 -5.6172 37 1 3.1774 -2.4900 -7.4082 38 1 1.9597 -1.1519 -7.5757 39 1 3.6990 0.4825 -8.1369 40 1 4.6183 -0.9807 -8.6984 41 1 5.2031 0.3558 -6.2059 42 1 5.4650 -1.4266 -6.4421 43 1 0.9973 -2.6494 0.7884 44 1 2.7207 -2.8852 1.2119 45 1 1.0661 0.4444 2.6521 46 1 0.2036 -1.0571 2.2403 47 1 2.6396 -1.7448 3.4935 48 1 3.2960 -2.9562 6.5313 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699973562.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:53 Heat of formation + Delta-G solvation = -2.241627 kcal Electronic energy + Delta-G solvation = -28541.443426 eV Core-core repulsion = 24598.037061 eV Total energy + Delta-G solvation = -3943.406365 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.55578 -41.28739 -39.54714 -39.20091 -36.51064 -35.96087 -34.22616 -32.84606 -31.83186 -30.53918 -27.87415 -27.33356 -27.05029 -26.56897 -25.50618 -24.25339 -22.98272 -22.68144 -21.23058 -20.54972 -19.92784 -19.21697 -18.58677 -17.98841 -17.85702 -17.27617 -16.71193 -16.62747 -16.58010 -16.05668 -15.87449 -15.35494 -15.28450 -14.79137 -14.67847 -14.25019 -14.09691 -13.74976 -13.71965 -13.52402 -13.45638 -13.32309 -13.07854 -13.00222 -12.74653 -12.66351 -12.41184 -12.23245 -11.97435 -11.91777 -11.87949 -11.67207 -11.54820 -11.42524 -11.39864 -11.39471 -11.27478 -10.90481 -10.15524 -9.72250 -8.99377 -7.93938 -5.23321 -0.02363 0.87353 1.46703 1.46926 1.50622 1.56584 1.79260 2.09285 2.56371 2.71079 3.29550 3.39963 3.52305 3.55727 3.64307 3.66597 3.78411 3.81871 3.93751 4.03607 4.12529 4.22572 4.32542 4.41792 4.51209 4.53019 4.56722 4.70134 4.74515 4.77195 4.80795 4.81344 4.87351 4.93747 4.95944 5.02931 5.07078 5.11926 5.14499 5.16507 5.19386 5.25787 5.30447 5.49349 5.50408 5.52600 6.27389 6.28808 6.44082 6.88205 7.33292 8.09498 8.31620 9.29612 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025161 B = 0.002228 C = 0.002115 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1112.559595 B =12561.891408 C =13237.356204 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.114 0.886 4 C 0.126 3.874 5 N -0.601 5.601 6 C 0.603 3.397 7 O -0.579 6.579 8 C -0.093 4.093 9 C 0.027 3.973 10 O -0.190 6.190 11 C 0.213 3.787 12 C -0.026 4.026 13 C -0.131 4.131 14 C -0.129 4.129 15 C -0.131 4.131 16 N -0.471 5.471 17 C 0.122 3.878 18 C -0.093 4.093 19 H 0.075 0.925 20 C 0.168 3.832 21 N -0.748 5.748 22 C -0.243 4.243 23 H 0.080 0.920 24 C -0.081 4.081 25 N -0.972 5.972 26 Si 0.976 3.024 27 H -0.278 1.278 28 H -0.298 1.298 29 H -0.275 1.275 30 H 0.041 0.959 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.253 0.747 36 H 0.145 0.855 37 H 0.082 0.918 38 H 0.089 0.911 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.087 0.913 42 H 0.079 0.921 43 H 0.065 0.935 44 H 0.048 0.952 45 H 0.035 0.965 46 H 0.030 0.970 47 H 0.371 0.629 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.356 7.158 -33.075 33.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.132 0.868 4 C 0.005 3.995 5 N -0.332 5.332 6 C 0.392 3.608 7 O -0.460 6.460 8 C -0.212 4.212 9 C -0.047 4.047 10 O -0.076 6.076 11 C 0.004 3.996 12 C -0.045 4.045 13 C -0.169 4.169 14 C -0.166 4.166 15 C -0.169 4.169 16 N -0.201 5.201 17 C 0.000 4.000 18 C -0.112 4.112 19 H 0.094 0.906 20 C 0.042 3.958 21 N -0.391 5.391 22 C -0.375 4.375 23 H 0.098 0.902 24 C -0.272 4.272 25 N -0.623 5.623 26 Si 0.805 3.195 27 H -0.204 1.204 28 H -0.224 1.224 29 H -0.201 1.201 30 H 0.060 0.940 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.095 0.905 34 H 0.102 0.898 35 H 0.268 0.732 36 H 0.163 0.837 37 H 0.101 0.899 38 H 0.108 0.892 39 H 0.120 0.880 40 H 0.100 0.900 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.083 0.917 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.048 0.952 47 H 0.202 0.798 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 0.088 7.170 -32.510 33.291 hybrid contribution 0.434 -1.481 1.439 2.110 sum 0.522 5.689 -31.071 31.592 Atomic orbital electron populations 1.21823 0.93185 1.01643 1.03112 1.22287 0.97282 0.99779 0.91341 0.86821 1.22233 1.01255 0.79548 0.96496 1.48367 1.60800 1.12883 1.11118 1.16814 0.77011 0.82964 0.84031 1.90815 1.56520 1.25040 1.73641 1.21457 1.11432 0.92622 0.95694 1.25676 0.98007 1.00093 0.80932 1.84376 1.64485 1.24552 1.34161 1.26916 0.94999 0.83586 0.94138 1.21693 1.01785 0.93225 0.87797 1.23069 1.01156 1.00552 0.92114 1.22839 0.96555 1.00984 0.96205 1.23042 0.94218 1.03171 0.96498 1.70848 1.20511 1.24504 1.04187 1.22198 0.99744 0.98295 0.79783 1.22482 1.00254 0.93366 0.95120 0.90617 1.20767 0.94509 0.95674 0.84868 1.42644 1.25306 1.64823 1.06309 1.19622 1.03090 1.27127 0.87636 0.90240 1.25635 0.98296 1.01288 1.02026 1.69835 1.19929 1.41537 1.30998 0.85172 0.77407 0.77694 0.79254 1.20390 1.22418 1.20060 0.93995 0.91662 0.90152 0.90456 0.89834 0.73161 0.83735 0.89930 0.89239 0.88003 0.89979 0.89450 0.90236 0.91684 0.93310 0.94733 0.95244 0.79773 0.94121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.07 7.91 71.98 0.57 -2.50 16 2 C -0.09 -2.09 3.47 -9.60 -0.03 -2.13 16 3 H 0.11 2.23 8.14 -2.39 -0.02 2.21 16 4 C 0.13 3.15 5.10 86.73 0.44 3.59 16 5 N -0.60 -19.54 3.32 -815.22 -2.71 -22.25 16 6 C 0.60 20.77 7.85 86.66 0.68 21.45 16 7 O -0.58 -23.87 17.14 -4.09 -0.07 -23.94 16 8 C -0.09 -2.53 6.83 40.40 0.28 -2.26 16 9 C 0.03 0.57 11.95 67.32 0.80 1.38 16 10 O -0.19 -3.49 10.43 0.45 0.00 -3.48 16 11 C 0.21 3.83 7.32 88.39 0.65 4.48 16 12 C -0.03 -0.26 4.28 -11.02 -0.05 -0.31 16 13 C -0.13 -0.92 7.64 31.18 0.24 -0.68 16 14 C -0.13 -0.57 8.09 31.18 0.25 -0.32 16 15 C -0.13 -1.01 7.63 31.12 0.24 -0.77 16 16 N -0.47 -11.00 8.83 -293.03 -2.59 -13.59 16 17 C 0.12 4.49 6.01 86.93 0.52 5.01 16 18 C -0.09 -3.07 2.93 -9.33 -0.03 -3.10 16 19 H 0.08 2.67 8.14 -2.39 -0.02 2.65 16 20 C 0.17 6.63 4.54 86.38 0.39 7.02 16 21 N -0.75 -39.00 5.55 -343.47 -1.91 -40.91 16 22 C -0.24 -13.82 9.99 84.04 0.84 -12.99 16 23 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 24 C -0.08 -4.76 5.50 84.86 0.47 -4.29 16 25 N -0.97 -61.74 13.06 21.65 0.28 -61.46 16 26 Si 0.98 47.24 29.55 68.60 2.03 49.27 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 28 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 29 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 30 H 0.04 1.04 7.32 -2.39 -0.02 1.03 16 31 H 0.06 1.45 7.12 -2.39 -0.02 1.44 16 32 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.87 7.63 -2.39 -0.02 1.86 16 34 H 0.08 1.94 7.45 -2.39 -0.02 1.92 16 35 H 0.25 3.89 8.06 -2.91 -0.02 3.86 16 36 H 0.14 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.08 0.71 7.85 -2.39 -0.02 0.69 16 38 H 0.09 0.47 8.14 -2.38 -0.02 0.45 16 39 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 40 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 41 H 0.09 0.57 8.14 -2.39 -0.02 0.55 16 42 H 0.08 0.76 8.09 -2.39 -0.02 0.74 16 43 H 0.06 2.46 7.46 -2.38 -0.02 2.44 16 44 H 0.05 2.12 8.03 -2.39 -0.02 2.10 16 45 H 0.03 1.32 8.05 -2.39 -0.02 1.30 16 46 H 0.03 1.16 6.94 -2.39 -0.02 1.14 16 47 H 0.37 20.98 7.67 -92.70 -0.71 20.27 16 48 H 0.25 15.44 8.31 -92.71 -0.77 14.67 16 Total: -1.00 -75.90 389.20 1.56 -74.35 By element: Atomic # 1 Polarization: 28.16 SS G_CDS: 0.26 Total: 28.41 kcal Atomic # 6 Polarization: 7.34 SS G_CDS: 6.26 Total: 13.60 kcal Atomic # 7 Polarization: -131.28 SS G_CDS: -6.92 Total: -138.20 kcal Atomic # 8 Polarization: -27.36 SS G_CDS: -0.07 Total: -27.42 kcal Atomic # 14 Polarization: 47.24 SS G_CDS: 2.03 Total: 49.27 kcal Total: -75.90 1.56 -74.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699973562.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.108 kcal (2) G-P(sol) polarization free energy of solvation -75.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds