Wall clock time and date at job start Tue Mar 31 2020 18:09:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46729 * 2 1 4 4 C 1.50699 * 109.47240 * 240.00102 * 2 1 3 5 5 O 1.21277 * 120.00174 * 259.55741 * 4 2 1 6 6 N 1.34777 * 120.00124 * 79.55191 * 4 2 1 7 7 C 1.46928 * 120.63006 * 184.30144 * 6 4 2 8 8 C 1.52764 * 109.00596 * 233.58522 * 7 6 4 9 9 C 1.53039 * 109.38449 * 305.59043 * 8 7 6 10 10 C 1.53039 * 109.54091 * 61.23932 * 9 8 7 11 11 C 1.53002 * 109.49877 * 178.68100 * 10 9 8 12 12 O 1.42902 * 109.47133 * 299.83775 * 11 10 9 13 13 N 1.46509 * 109.52001 * 58.60307 * 10 9 8 14 14 C 1.36931 * 120.00089 * 60.14644 * 13 10 9 15 15 H 1.07997 * 120.00159 * 0.02562 * 14 13 10 16 16 C 1.38816 * 119.99902 * 179.97438 * 14 13 10 17 17 N 1.31621 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00056 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47092 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46853 * 120.00497 * 18 16 14 21 21 H 1.48499 * 109.47300 * 240.00251 * 18 16 14 22 22 C 1.46923 * 120.62939 * 4.58614 * 6 4 2 23 23 C 1.50689 * 109.46895 * 119.99828 * 2 1 3 24 24 C 1.38675 * 120.41985 * 239.71791 * 23 2 1 25 25 C 1.38633 * 118.41971 * 179.78040 * 24 23 2 26 26 C 1.38223 * 119.16279 * 0.48282 * 25 24 23 27 27 N 1.31859 * 120.76425 * 359.76245 * 26 25 24 28 28 C 1.31882 * 121.72203 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47137 * 173.97336 * 1 2 3 30 30 H 1.08994 * 109.47145 * 293.97674 * 1 2 3 31 31 H 1.08999 * 109.46766 * 53.97891 * 1 2 3 32 32 H 1.08994 * 109.58444 * 353.42115 * 7 6 4 33 33 H 1.08994 * 109.58490 * 113.84769 * 7 6 4 34 34 H 1.08995 * 109.56713 * 185.55288 * 8 7 6 35 35 H 1.09004 * 109.38617 * 65.51452 * 8 7 6 36 36 H 1.08995 * 109.46191 * 301.21804 * 9 8 7 37 37 H 1.09003 * 109.45874 * 181.26027 * 9 8 7 38 38 H 1.08992 * 109.46690 * 59.83878 * 11 10 9 39 39 H 1.09000 * 109.46705 * 179.83709 * 11 10 9 40 40 H 0.96698 * 113.99816 * 179.97438 * 12 11 10 41 41 H 0.97000 * 119.99420 * 240.14258 * 13 10 9 42 42 H 0.96999 * 120.00000 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.58941 * 246.15219 * 22 6 4 44 44 H 1.09000 * 109.59141 * 6.57450 * 22 6 4 45 45 H 1.08002 * 120.79148 * 0.03176 * 24 23 2 46 46 H 1.08000 * 120.41757 * 180.22529 * 25 24 23 47 47 H 1.08002 * 119.61858 * 179.74391 * 26 25 24 48 48 H 1.08003 * 119.61650 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.4140 -1.8590 -1.1542 6 7 2.0575 -0.0693 -2.4157 7 6 2.4553 -0.7761 -3.6409 8 6 3.5783 0.0034 -4.3226 9 6 3.1291 1.4489 -4.5481 10 6 2.8305 2.1084 -3.1998 11 6 2.4131 3.5632 -3.4242 12 8 3.4741 4.2688 -4.0711 13 7 4.0295 2.0678 -2.3588 14 6 5.1798 2.6822 -2.7764 15 1 5.2032 3.1970 -3.7255 16 6 6.3157 2.6442 -1.9793 17 7 6.2871 2.0172 -0.8224 18 14 7.8852 3.4816 -2.5492 19 1 7.6572 4.1107 -3.8750 20 1 8.2742 4.5251 -1.5669 21 1 8.9716 2.4752 -2.6587 22 6 1.6936 1.3513 -2.5062 23 6 2.0323 -0.7103 1.2304 24 6 2.8349 -0.0465 2.1460 25 6 3.2698 -0.7385 3.2658 26 6 2.9001 -2.0606 3.4262 27 7 2.1397 -2.6616 2.5322 28 6 1.7034 -2.0330 1.4580 29 1 -0.3633 -1.0219 -0.1079 30 1 -0.3633 0.4176 0.9389 31 1 -0.3633 0.6044 -0.8312 32 1 2.8077 -1.7759 -3.3877 33 1 1.6019 -0.8470 -4.3152 34 1 3.8132 -0.4583 -5.2816 35 1 4.4638 -0.0074 -3.6870 36 1 2.2297 1.4578 -5.1638 37 1 3.9211 2.0005 -5.0547 38 1 1.5219 3.5929 -4.0508 39 1 2.1978 4.0316 -2.4638 40 1 3.2784 5.1996 -4.2455 41 1 4.0083 1.6058 -1.5062 42 1 7.0809 1.9903 -0.2655 43 1 0.7768 1.4575 -3.0861 44 1 1.5436 1.7547 -1.5047 45 1 3.1111 0.9863 1.9925 46 1 3.8931 -0.2518 4.0013 47 1 3.2383 -2.6079 4.2937 48 1 1.0826 -2.5585 0.7474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001700241630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:36 Heat of formation + Delta-G solvation = -27.961615 kcal Electronic energy + Delta-G solvation = -30776.794588 eV Core-core repulsion = 26832.272920 eV Total energy + Delta-G solvation = -3944.521668 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.63489 -39.56649 -37.95769 -35.74451 -34.56332 -33.74945 -32.15610 -31.85989 -31.43829 -29.49743 -28.71273 -25.78901 -25.30338 -24.46623 -23.54820 -23.30230 -22.53037 -20.97520 -19.28883 -18.30823 -17.40654 -17.19812 -16.85164 -16.39837 -15.89249 -15.68756 -15.02879 -14.84359 -14.61762 -14.13659 -13.94722 -13.84159 -13.67010 -13.50834 -13.29268 -13.14936 -12.80302 -12.73334 -12.50537 -12.42793 -12.21073 -11.93929 -11.90745 -11.50390 -11.26099 -11.19734 -10.84245 -10.75869 -10.38180 -10.28326 -10.15285 -9.91087 -9.66609 -9.61087 -9.28275 -9.20996 -9.03873 -8.81727 -8.74677 -8.26117 -6.92447 -5.66494 -2.93721 1.31150 1.54275 2.90752 3.25021 3.47950 3.55123 3.57111 4.05059 4.51654 4.60495 4.65420 4.78654 4.82699 4.98647 5.07608 5.14179 5.24097 5.29424 5.36899 5.40128 5.48109 5.52701 5.58333 5.61625 5.70927 5.73604 5.74775 5.77415 5.83803 5.85356 5.91807 5.97597 6.05207 6.10011 6.13855 6.35487 6.42530 6.50507 6.52037 6.63384 6.85757 6.92133 6.99612 7.12271 7.68564 8.05456 8.19295 8.28201 8.46890 8.50864 9.63488 10.12848 10.48659 11.56319 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.004806 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.087878 B = 5825.065099 C = 7188.375306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.069 4.069 3 H 0.107 0.893 4 C 0.528 3.472 5 O -0.539 6.539 6 N -0.594 5.594 7 C 0.117 3.883 8 C -0.129 4.129 9 C -0.116 4.116 10 C 0.187 3.813 11 C 0.076 3.924 12 O -0.538 6.538 13 N -0.705 5.705 14 C -0.208 4.208 15 H 0.093 0.907 16 C -0.023 4.023 17 N -0.939 5.939 18 Si 0.902 3.098 19 H -0.281 1.281 20 H -0.297 1.297 21 H -0.297 1.297 22 C 0.108 3.892 23 C -0.120 4.120 24 C -0.057 4.057 25 C -0.176 4.176 26 C 0.091 3.909 27 N -0.493 5.493 28 C 0.134 3.866 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.075 0.925 38 H 0.024 0.976 39 H 0.037 0.963 40 H 0.354 0.646 41 H 0.380 0.620 42 H 0.250 0.750 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.138 0.862 46 H 0.133 0.867 47 H 0.151 0.849 48 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.671 -0.584 0.638 14.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.091 4.091 3 H 0.125 0.875 4 C 0.316 3.684 5 O -0.416 6.416 6 N -0.327 5.327 7 C -0.006 4.006 8 C -0.167 4.167 9 C -0.155 4.155 10 C 0.093 3.907 11 C -0.006 4.006 12 O -0.340 6.340 13 N -0.345 5.345 14 C -0.339 4.339 15 H 0.111 0.889 16 C -0.217 4.217 17 N -0.589 5.589 18 Si 0.734 3.266 19 H -0.206 1.206 20 H -0.224 1.224 21 H -0.225 1.225 22 C -0.016 4.016 23 C -0.122 4.122 24 C -0.083 4.083 25 C -0.196 4.196 26 C -0.065 4.065 27 N -0.202 5.202 28 C -0.023 4.023 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.104 0.896 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.106 0.894 36 H 0.059 0.941 37 H 0.093 0.907 38 H 0.042 0.958 39 H 0.055 0.945 40 H 0.198 0.802 41 H 0.214 0.786 42 H 0.060 0.940 43 H 0.088 0.912 44 H 0.104 0.896 45 H 0.156 0.844 46 H 0.151 0.849 47 H 0.168 0.832 48 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -14.262 -2.600 0.764 14.517 hybrid contribution 1.160 2.022 -0.195 2.339 sum -13.102 -0.579 0.568 13.127 Atomic orbital electron populations 1.21757 0.91838 1.02958 1.02925 1.20226 0.97506 1.00711 0.90662 0.87480 1.20233 0.77582 0.86716 0.83876 1.90677 1.47759 1.18210 1.84915 1.47803 1.66752 1.10584 1.07511 1.21497 0.97226 0.96976 0.84851 1.21731 0.99481 0.95439 1.00063 1.21846 1.00281 0.95715 0.97694 1.19970 0.88205 0.90705 0.91790 1.22703 0.88336 0.94793 0.94724 1.86859 1.41102 1.24917 1.81171 1.42363 1.06937 1.64365 1.20814 1.19577 0.87514 1.23914 1.02927 0.88916 1.24730 0.98045 1.01784 0.97138 1.69667 1.28532 1.48500 1.12202 0.86172 0.84197 0.78604 0.77595 1.20617 1.22423 1.22456 1.21937 0.97118 0.80620 1.01929 1.20319 0.99918 0.95982 0.96019 1.21585 0.93340 1.00748 0.92646 1.22069 1.01996 0.96267 0.99234 1.22708 0.94057 0.92305 0.97448 1.67703 1.11037 1.38456 1.02968 1.22526 0.95952 0.90807 0.92979 0.91839 0.91226 0.91488 0.89616 0.92444 0.92304 0.89438 0.94070 0.90684 0.95763 0.94475 0.80160 0.78593 0.94037 0.91189 0.89608 0.84434 0.84923 0.83214 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 8.79 37.16 0.33 -1.09 16 2 C -0.07 -0.96 2.07 -92.93 -0.19 -1.16 16 3 H 0.11 1.49 6.15 -51.93 -0.32 1.17 16 4 C 0.53 8.93 6.82 -10.99 -0.07 8.85 16 5 O -0.54 -10.88 14.04 5.56 0.08 -10.80 16 6 N -0.59 -9.30 2.87 -173.04 -0.50 -9.80 16 7 C 0.12 1.81 6.41 -3.93 -0.03 1.79 16 8 C -0.13 -2.22 5.91 -26.83 -0.16 -2.37 16 9 C -0.12 -1.95 4.39 -26.69 -0.12 -2.07 16 10 C 0.19 3.21 0.68 -131.69 -0.09 3.12 16 11 C 0.08 1.17 6.08 37.16 0.23 1.40 16 12 O -0.54 -9.34 9.96 -35.23 -0.35 -9.69 16 13 N -0.70 -15.90 4.22 -47.12 -0.20 -16.09 16 14 C -0.21 -5.42 8.29 -15.06 -0.12 -5.54 16 15 H 0.09 2.44 5.30 -52.49 -0.28 2.17 16 16 C -0.02 -0.63 5.50 -17.43 -0.10 -0.73 16 17 N -0.94 -27.79 13.06 55.49 0.72 -27.07 16 18 Si 0.90 22.66 29.55 -169.99 -5.02 17.64 16 19 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 20 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 21 H -0.30 -7.65 7.11 56.52 0.40 -7.25 16 22 C 0.11 1.50 4.45 -3.71 -0.02 1.48 16 23 C -0.12 -1.85 4.60 -104.49 -0.48 -2.33 16 24 C -0.06 -0.86 9.81 -39.27 -0.39 -1.25 16 25 C -0.18 -2.42 10.11 -39.44 -0.40 -2.82 16 26 C 0.09 1.28 11.18 -17.55 -0.20 1.09 16 27 N -0.49 -8.02 10.36 -13.25 -0.14 -8.15 16 28 C 0.13 2.15 9.11 -17.55 -0.16 1.99 16 29 H 0.06 0.66 7.63 -51.93 -0.40 0.26 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.59 7.44 -51.93 -0.39 0.20 16 32 H 0.09 1.46 7.00 -51.93 -0.36 1.09 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.09 1.92 7.53 -51.93 -0.39 1.53 16 36 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.07 1.47 6.84 -51.93 -0.36 1.12 16 38 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.35 4.43 9.12 45.56 0.42 4.85 16 41 H 0.38 9.43 7.65 -40.82 -0.31 9.12 16 42 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 43 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 44 H 0.09 1.12 5.28 -51.93 -0.27 0.85 16 45 H 0.14 1.99 8.00 -52.49 -0.42 1.57 16 46 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 47 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 48 H 0.15 2.34 7.12 -52.48 -0.37 1.97 16 LS Contribution 376.08 15.07 5.67 5.67 Total: -1.00 -34.00 376.08 -8.10 -42.09 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -6.39 Total: 15.83 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -1.96 Total: 0.37 kcal Atomic # 7 Polarization: -61.01 SS G_CDS: -0.11 Total: -61.11 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: -0.27 Total: -20.49 kcal Atomic # 14 Polarization: 22.66 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.00 -8.10 -42.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700241630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.133 kcal (2) G-P(sol) polarization free energy of solvation -33.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds