Wall clock time and date at job start Tue Mar 31 2020 18:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.46729 * 2 1 4 4 C 1.50699 * 109.47240 * 240.00102 * 2 1 3 5 5 O 1.21277 * 120.00174 * 259.55741 * 4 2 1 6 6 N 1.34777 * 120.00124 * 79.55191 * 4 2 1 7 7 C 1.46928 * 120.63006 * 184.30144 * 6 4 2 8 8 C 1.52764 * 109.00596 * 233.58522 * 7 6 4 9 9 C 1.53039 * 109.38449 * 305.59043 * 8 7 6 10 10 C 1.53039 * 109.54091 * 61.23932 * 9 8 7 11 11 C 1.53002 * 109.49877 * 178.68100 * 10 9 8 12 12 O 1.42902 * 109.47133 * 299.83775 * 11 10 9 13 13 N 1.46509 * 109.52001 * 58.60307 * 10 9 8 14 14 C 1.36931 * 120.00089 * 60.14644 * 13 10 9 15 15 H 1.07997 * 120.00159 * 0.02562 * 14 13 10 16 16 C 1.38816 * 119.99902 * 179.97438 * 14 13 10 17 17 N 1.31621 * 119.99989 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00056 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.47092 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.46853 * 120.00497 * 18 16 14 21 21 H 1.48499 * 109.47300 * 240.00251 * 18 16 14 22 22 C 1.46923 * 120.62939 * 4.58614 * 6 4 2 23 23 C 1.50689 * 109.46895 * 119.99828 * 2 1 3 24 24 C 1.38675 * 120.41985 * 239.71791 * 23 2 1 25 25 C 1.38633 * 118.41971 * 179.78040 * 24 23 2 26 26 C 1.38223 * 119.16279 * 0.48282 * 25 24 23 27 27 N 1.31859 * 120.76425 * 359.76245 * 26 25 24 28 28 C 1.31882 * 121.72203 * 359.97438 * 27 26 25 29 29 H 1.08995 * 109.47137 * 173.97336 * 1 2 3 30 30 H 1.08994 * 109.47145 * 293.97674 * 1 2 3 31 31 H 1.08999 * 109.46766 * 53.97891 * 1 2 3 32 32 H 1.08994 * 109.58444 * 353.42115 * 7 6 4 33 33 H 1.08994 * 109.58490 * 113.84769 * 7 6 4 34 34 H 1.08995 * 109.56713 * 185.55288 * 8 7 6 35 35 H 1.09004 * 109.38617 * 65.51452 * 8 7 6 36 36 H 1.08995 * 109.46191 * 301.21804 * 9 8 7 37 37 H 1.09003 * 109.45874 * 181.26027 * 9 8 7 38 38 H 1.08992 * 109.46690 * 59.83878 * 11 10 9 39 39 H 1.09000 * 109.46705 * 179.83709 * 11 10 9 40 40 H 0.96698 * 113.99816 * 179.97438 * 12 11 10 41 41 H 0.97000 * 119.99420 * 240.14258 * 13 10 9 42 42 H 0.96999 * 120.00000 * 179.97438 * 17 16 14 43 43 H 1.09002 * 109.58941 * 246.15219 * 22 6 4 44 44 H 1.09000 * 109.59141 * 6.57450 * 22 6 4 45 45 H 1.08002 * 120.79148 * 0.03176 * 24 23 2 46 46 H 1.08000 * 120.41757 * 180.22529 * 25 24 23 47 47 H 1.08002 * 119.61858 * 179.74391 * 26 25 24 48 48 H 1.08003 * 119.61650 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 8 2.4140 -1.8590 -1.1542 6 7 2.0575 -0.0693 -2.4157 7 6 2.4553 -0.7761 -3.6409 8 6 3.5783 0.0034 -4.3226 9 6 3.1291 1.4489 -4.5481 10 6 2.8305 2.1084 -3.1998 11 6 2.4131 3.5632 -3.4242 12 8 3.4741 4.2688 -4.0711 13 7 4.0295 2.0678 -2.3588 14 6 5.1798 2.6822 -2.7764 15 1 5.2032 3.1970 -3.7255 16 6 6.3157 2.6442 -1.9793 17 7 6.2871 2.0172 -0.8224 18 14 7.8852 3.4816 -2.5492 19 1 7.6572 4.1107 -3.8750 20 1 8.2742 4.5251 -1.5669 21 1 8.9716 2.4752 -2.6587 22 6 1.6936 1.3513 -2.5062 23 6 2.0323 -0.7103 1.2304 24 6 2.8349 -0.0465 2.1460 25 6 3.2698 -0.7385 3.2658 26 6 2.9001 -2.0606 3.4262 27 7 2.1397 -2.6616 2.5322 28 6 1.7034 -2.0330 1.4580 29 1 -0.3633 -1.0219 -0.1079 30 1 -0.3633 0.4176 0.9389 31 1 -0.3633 0.6044 -0.8312 32 1 2.8077 -1.7759 -3.3877 33 1 1.6019 -0.8470 -4.3152 34 1 3.8132 -0.4583 -5.2816 35 1 4.4638 -0.0074 -3.6870 36 1 2.2297 1.4578 -5.1638 37 1 3.9211 2.0005 -5.0547 38 1 1.5219 3.5929 -4.0508 39 1 2.1978 4.0316 -2.4638 40 1 3.2784 5.1996 -4.2455 41 1 4.0083 1.6058 -1.5062 42 1 7.0809 1.9903 -0.2655 43 1 0.7768 1.4575 -3.0861 44 1 1.5436 1.7547 -1.5047 45 1 3.1111 0.9863 1.9925 46 1 3.8931 -0.2518 4.0013 47 1 3.2383 -2.6079 4.2937 48 1 1.0826 -2.5585 0.7474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700241630.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:35 Heat of formation + Delta-G solvation = -53.002416 kcal Electronic energy + Delta-G solvation = -30777.880439 eV Core-core repulsion = 26832.272920 eV Total energy + Delta-G solvation = -3945.607518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.85014 -40.78144 -39.31740 -37.03061 -35.70459 -35.43243 -33.64762 -33.14154 -32.81525 -30.57772 -30.43891 -26.98899 -26.50128 -25.70806 -25.36992 -24.45604 -23.75522 -22.21514 -20.63086 -19.64284 -19.13881 -18.40680 -18.03172 -17.81464 -17.16718 -16.85001 -16.55223 -16.17172 -15.81943 -15.73142 -15.40690 -15.14733 -15.00362 -14.77446 -14.59545 -14.50251 -13.99200 -13.93025 -13.74960 -13.61214 -13.45880 -13.27733 -13.09978 -12.89300 -12.69090 -12.61787 -12.44136 -12.25174 -11.96614 -11.80179 -11.68402 -11.56926 -11.26456 -10.86839 -10.72688 -10.52900 -10.44792 -10.37246 -9.87662 -9.52961 -8.83632 -7.77734 -5.00367 0.18250 0.37461 1.45016 1.47814 1.55939 1.63234 2.06693 2.65490 2.90162 3.41067 3.45019 3.55364 3.71463 3.73501 3.79191 3.95413 4.04534 4.09829 4.14053 4.16803 4.24475 4.27145 4.39225 4.45874 4.50184 4.58231 4.64993 4.67347 4.71439 4.81457 4.85697 4.87552 4.88927 4.93678 5.06020 5.09756 5.19783 5.23157 5.30713 5.39597 5.55985 5.58589 5.69950 5.80318 5.95605 6.44395 6.46321 7.04109 7.19538 7.24382 7.53624 8.25088 8.46469 9.46125 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011055 B = 0.004806 C = 0.003894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.087878 B = 5825.065099 C = 7188.375306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.062 4.062 3 H 0.107 0.893 4 C 0.520 3.480 5 O -0.582 6.582 6 N -0.594 5.594 7 C 0.119 3.881 8 C -0.123 4.123 9 C -0.108 4.108 10 C 0.171 3.829 11 C 0.077 3.923 12 O -0.571 6.571 13 N -0.713 5.713 14 C -0.172 4.172 15 H 0.093 0.907 16 C -0.093 4.093 17 N -0.976 5.976 18 Si 0.950 3.050 19 H -0.269 1.269 20 H -0.302 1.302 21 H -0.312 1.312 22 C 0.109 3.891 23 C -0.129 4.129 24 C -0.076 4.076 25 C -0.175 4.175 26 C 0.084 3.916 27 N -0.516 5.516 28 C 0.120 3.880 29 H 0.060 0.940 30 H 0.083 0.917 31 H 0.090 0.910 32 H 0.062 0.938 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.028 0.972 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.037 0.963 40 H 0.376 0.624 41 H 0.366 0.634 42 H 0.237 0.763 43 H 0.119 0.881 44 H 0.096 0.904 45 H 0.139 0.861 46 H 0.159 0.841 47 H 0.181 0.819 48 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.529 0.722 -0.519 17.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.084 4.084 3 H 0.125 0.875 4 C 0.309 3.691 5 O -0.462 6.462 6 N -0.325 5.325 7 C -0.003 4.003 8 C -0.162 4.162 9 C -0.148 4.148 10 C 0.080 3.920 11 C -0.003 4.003 12 O -0.377 6.377 13 N -0.352 5.352 14 C -0.305 4.305 15 H 0.111 0.889 16 C -0.283 4.283 17 N -0.630 5.630 18 Si 0.784 3.216 19 H -0.194 1.194 20 H -0.231 1.231 21 H -0.241 1.241 22 C -0.014 4.014 23 C -0.131 4.131 24 C -0.102 4.102 25 C -0.194 4.194 26 C -0.072 4.072 27 N -0.225 5.225 28 C -0.036 4.036 29 H 0.079 0.921 30 H 0.102 0.898 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.117 0.883 34 H 0.094 0.906 35 H 0.047 0.953 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.055 0.945 40 H 0.224 0.776 41 H 0.197 0.803 42 H 0.046 0.954 43 H 0.137 0.863 44 H 0.114 0.886 45 H 0.157 0.843 46 H 0.176 0.824 47 H 0.198 0.802 48 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -17.180 -1.233 -0.468 17.231 hybrid contribution 1.994 1.617 0.053 2.568 sum -15.187 0.384 -0.415 15.197 Atomic orbital electron populations 1.21770 0.88758 1.03475 1.04720 1.20250 0.99919 0.99683 0.88543 0.87509 1.20795 0.76969 0.86424 0.84895 1.90655 1.49706 1.20221 1.85596 1.47914 1.66057 1.11352 1.07185 1.21495 0.97945 0.95474 0.85369 1.21630 0.97887 0.96747 0.99888 1.21762 1.00975 0.94396 0.97656 1.20453 0.87281 0.92882 0.91360 1.22617 0.89198 0.92688 0.95762 1.86744 1.42704 1.26886 1.81391 1.42520 1.08027 1.63656 1.20969 1.19797 0.88239 1.20861 1.01593 0.88938 1.25303 1.00661 1.04291 0.98059 1.69805 1.28259 1.51438 1.13540 0.85351 0.81510 0.77298 0.77450 1.19388 1.23068 1.24079 1.22141 0.97300 0.78809 1.03141 1.20502 0.99985 0.95966 0.96668 1.21803 0.93809 1.01140 0.93476 1.22396 1.01542 0.96260 0.99220 1.23242 0.93354 0.92737 0.97871 1.67693 1.11953 1.39235 1.03582 1.22551 0.96630 0.91219 0.93239 0.92100 0.89814 0.89131 0.91895 0.88342 0.90577 0.95259 0.89918 0.93752 0.91165 0.94456 0.77627 0.80254 0.95363 0.86322 0.88631 0.84346 0.82379 0.80158 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.79 71.98 0.63 -1.73 16 2 C -0.06 -1.68 2.07 -12.29 -0.03 -1.70 16 3 H 0.11 2.86 6.15 -2.38 -0.01 2.85 16 4 C 0.52 17.37 6.82 87.66 0.60 17.96 16 5 O -0.58 -24.13 14.04 -3.02 -0.04 -24.17 16 6 N -0.59 -17.46 2.87 -819.76 -2.36 -19.81 16 7 C 0.12 3.50 6.41 86.22 0.55 4.05 16 8 C -0.12 -4.12 5.91 30.53 0.18 -3.94 16 9 C -0.11 -3.36 4.39 30.62 0.13 -3.23 16 10 C 0.17 5.41 0.68 3.68 0.00 5.42 16 11 C 0.08 2.08 6.08 71.98 0.44 2.52 16 12 O -0.57 -18.21 9.96 -148.98 -1.48 -19.70 16 13 N -0.71 -31.98 4.22 -302.98 -1.28 -33.25 16 14 C -0.17 -9.01 8.29 84.04 0.70 -8.31 16 15 H 0.09 4.84 5.30 -2.91 -0.02 4.82 16 16 C -0.09 -5.34 5.50 84.86 0.47 -4.87 16 17 N -0.98 -59.94 13.06 21.65 0.28 -59.66 16 18 Si 0.95 47.87 29.55 68.60 2.03 49.90 16 19 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.30 -15.32 7.11 99.48 0.71 -14.62 16 21 H -0.31 -16.27 7.11 99.48 0.71 -15.57 16 22 C 0.11 2.60 4.45 86.36 0.38 2.99 16 23 C -0.13 -3.99 4.60 -19.78 -0.09 -4.09 16 24 C -0.08 -2.32 9.81 22.47 0.22 -2.10 16 25 C -0.17 -4.71 10.11 22.36 0.23 -4.49 16 26 C 0.08 2.32 11.18 84.69 0.95 3.27 16 27 N -0.52 -16.89 10.36 -195.84 -2.03 -18.92 16 28 C 0.12 3.92 9.11 84.67 0.77 4.70 16 29 H 0.06 1.15 7.63 -2.39 -0.02 1.13 16 30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 31 H 0.09 1.21 7.44 -2.39 -0.02 1.19 16 32 H 0.06 2.15 7.00 -2.39 -0.02 2.13 16 33 H 0.10 2.13 8.14 -2.39 -0.02 2.11 16 34 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 35 H 0.03 1.31 7.53 -2.38 -0.02 1.29 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 1.66 6.84 -2.39 -0.02 1.64 16 38 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 39 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 40 H 0.38 8.26 9.12 -74.06 -0.68 7.58 16 41 H 0.37 18.43 7.65 -92.71 -0.71 17.72 16 42 H 0.24 14.59 8.31 -92.71 -0.77 13.82 16 43 H 0.12 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.10 2.16 5.28 -2.39 -0.01 2.15 16 45 H 0.14 4.08 8.00 -2.91 -0.02 4.05 16 46 H 0.16 3.33 8.06 -2.91 -0.02 3.31 16 47 H 0.18 3.64 8.06 -2.91 -0.02 3.62 16 48 H 0.15 4.76 7.12 -2.91 -0.02 4.74 16 Total: -1.00 -78.69 376.08 0.86 -77.82 By element: Atomic # 1 Polarization: 41.72 SS G_CDS: -0.39 Total: 41.32 kcal Atomic # 6 Polarization: 0.32 SS G_CDS: 6.13 Total: 6.46 kcal Atomic # 7 Polarization: -126.26 SS G_CDS: -5.38 Total: -131.64 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.53 Total: -43.87 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 2.03 Total: 49.90 kcal Total: -78.69 0.86 -77.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700241630.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.820 kcal (2) G-P(sol) polarization free energy of solvation -78.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.866 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds