Wall clock time and date at job start Tue Mar 31 2020 18:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47259 * 2 1 4 4 C 1.50704 * 109.46880 * 119.99469 * 2 1 3 5 5 O 1.21275 * 119.99794 * 23.64567 * 4 2 1 6 6 N 1.34774 * 120.00212 * 203.63824 * 4 2 1 7 7 C 1.46931 * 120.62649 * 4.82925 * 6 4 2 8 8 C 1.52760 * 109.00761 * 233.57970 * 7 6 4 9 9 C 1.53041 * 109.38348 * 305.59375 * 8 7 6 10 10 C 1.53030 * 109.54068 * 61.24039 * 9 8 7 11 11 C 1.53001 * 109.49955 * 178.68324 * 10 9 8 12 12 O 1.42901 * 109.47293 * 299.83768 * 11 10 9 13 13 N 1.46495 * 109.52850 * 58.59983 * 10 9 8 14 14 C 1.36939 * 119.99968 * 60.14769 * 13 10 9 15 15 H 1.08002 * 119.99699 * 0.02562 * 14 13 10 16 16 C 1.38815 * 120.00456 * 180.02562 * 14 13 10 17 17 N 1.31621 * 119.99686 * 0.02562 * 16 14 13 18 18 Si 1.86795 * 120.00206 * 179.97438 * 16 14 13 19 19 H 1.48500 * 109.46746 * 90.00103 * 18 16 14 20 20 H 1.48495 * 109.47256 * 209.99925 * 18 16 14 21 21 H 1.48502 * 109.47200 * 330.00290 * 18 16 14 22 22 C 1.46926 * 120.63361 * 185.10975 * 6 4 2 23 23 C 1.50701 * 109.47526 * 239.99445 * 2 1 3 24 24 C 1.38672 * 120.41806 * 119.99943 * 23 2 1 25 25 C 1.38632 * 118.41815 * 180.02562 * 24 23 2 26 26 C 1.38222 * 119.16352 * 359.97438 * 25 24 23 27 27 N 1.31858 * 120.76494 * 0.02562 * 26 25 24 28 28 C 1.31889 * 121.72065 * 359.70508 * 27 26 25 29 29 H 1.09005 * 109.47043 * 175.31950 * 1 2 3 30 30 H 1.09004 * 109.46629 * 55.32200 * 1 2 3 31 31 H 1.08998 * 109.47312 * 295.31806 * 1 2 3 32 32 H 1.08993 * 109.58705 * 353.41912 * 7 6 4 33 33 H 1.09007 * 109.58350 * 113.84346 * 7 6 4 34 34 H 1.08998 * 109.56408 * 185.55298 * 8 7 6 35 35 H 1.08999 * 109.38566 * 65.51630 * 8 7 6 36 36 H 1.08996 * 109.45671 * 301.21344 * 9 8 7 37 37 H 1.09006 * 109.44405 * 181.25552 * 9 8 7 38 38 H 1.09003 * 109.47293 * 59.83590 * 11 10 9 39 39 H 1.08997 * 109.47506 * 179.83617 * 11 10 9 40 40 H 0.96695 * 114.00187 * 179.97438 * 12 11 10 41 41 H 0.96994 * 120.00657 * 240.14651 * 13 10 9 42 42 H 0.97001 * 120.00009 * 179.97438 * 17 16 14 43 43 H 1.09000 * 109.58389 * 246.16068 * 22 6 4 44 44 H 1.09005 * 109.58556 * 6.57868 * 22 6 4 45 45 H 1.07998 * 120.78839 * 0.02863 * 24 23 2 46 46 H 1.07996 * 120.41528 * 180.02562 * 25 24 23 47 47 H 1.08000 * 119.61595 * 179.97438 * 26 25 24 48 48 H 1.08006 * 119.61398 * 180.31381 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.3273 -1.5213 1.7928 6 7 3.2650 -0.4445 1.7062 7 6 4.0899 0.6097 1.1002 8 6 5.4475 0.0219 0.7193 9 6 6.0763 -0.6413 1.9469 10 6 5.1748 -1.7785 2.4325 11 6 5.8202 -2.4619 3.6397 12 8 7.0915 -2.9945 3.2623 13 7 4.9957 -2.7554 1.3556 14 6 6.0826 -3.4010 0.8291 15 1 7.0717 -3.1904 1.2082 16 6 5.9131 -4.3263 -0.1917 17 7 4.7077 -4.5827 -0.6540 18 14 7.3957 -5.2065 -0.9102 19 1 7.6428 -6.4593 -0.1522 20 1 7.1348 -5.5333 -2.3351 21 1 8.5881 -4.3266 -0.8144 22 6 3.8120 -1.2074 2.8365 23 6 2.0325 -0.7105 -1.2304 24 6 2.8303 -0.0450 -2.1489 25 6 3.2689 -0.7384 -3.2663 26 6 2.8996 -2.0607 -3.4264 27 7 2.1395 -2.6617 -2.5322 28 6 1.7083 -2.0349 -1.4549 29 1 -0.3633 -1.0243 -0.0839 30 1 -0.3633 0.5847 -0.8452 31 1 -0.3634 0.4395 0.9289 32 1 3.5955 0.9926 0.2075 33 1 4.2331 1.4187 1.8166 34 1 6.1013 0.8164 0.3599 35 1 5.3123 -0.7214 -0.0665 36 1 6.1890 0.0971 2.7406 37 1 7.0549 -1.0415 1.6817 38 1 5.9543 -1.7345 4.4403 39 1 5.1764 -3.2699 3.9870 40 1 7.5589 -3.4428 3.9803 41 1 4.1074 -2.9449 1.0153 42 1 4.5892 -5.2289 -1.3676 43 1 3.9320 -0.5496 3.6973 44 1 3.1342 -2.0229 3.0890 45 1 3.1033 0.9888 -1.9972 46 1 3.8920 -0.2517 -4.0020 47 1 3.2369 -2.6077 -4.2944 48 1 1.0915 -2.5617 -0.7418 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700241636.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:38 Heat of formation + Delta-G solvation = -49.895692 kcal Electronic energy + Delta-G solvation = -31608.417353 eV Core-core repulsion = 27662.944552 eV Total energy + Delta-G solvation = -3945.472801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.81460 -40.65220 -39.32116 -37.14054 -35.74062 -35.31262 -33.60172 -32.91523 -32.67397 -30.64005 -30.40446 -27.19573 -26.64707 -25.59916 -25.07734 -24.39435 -23.18423 -22.87307 -20.36136 -19.55165 -19.08465 -18.42438 -18.00807 -17.89065 -17.01161 -16.89775 -16.68885 -16.17674 -15.79289 -15.61539 -15.36864 -15.04276 -14.89678 -14.76106 -14.64264 -14.42303 -14.00779 -13.83429 -13.73549 -13.49696 -13.43087 -13.28217 -13.00213 -12.87392 -12.67916 -12.58094 -12.36067 -12.27825 -11.97665 -11.73190 -11.66597 -11.46800 -11.28023 -10.92346 -10.69051 -10.53636 -10.47799 -10.18105 -9.74621 -9.49105 -8.78349 -7.67349 -4.93279 0.25521 0.52993 1.44019 1.45717 1.53143 1.64711 2.11431 2.66774 2.98922 3.46516 3.55001 3.62588 3.73332 3.82027 3.84702 3.92724 4.00624 4.12977 4.15246 4.19660 4.30465 4.31956 4.41027 4.45551 4.52222 4.58204 4.65367 4.68435 4.75708 4.82656 4.86802 4.92869 4.95507 4.97995 5.04846 5.07888 5.24449 5.27348 5.34569 5.39460 5.60463 5.63225 5.74813 5.91030 5.96947 6.48108 6.52148 7.13445 7.23289 7.25557 7.56770 8.28517 8.52619 9.52404 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.009997 B = 0.006705 C = 0.004822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.247158 B = 4175.220997 C = 5805.176890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.055 4.055 3 H 0.140 0.860 4 C 0.516 3.484 5 O -0.584 6.584 6 N -0.595 5.595 7 C 0.108 3.892 8 C -0.123 4.123 9 C -0.108 4.108 10 C 0.176 3.824 11 C 0.076 3.924 12 O -0.566 6.566 13 N -0.710 5.710 14 C -0.184 4.184 15 H 0.089 0.911 16 C -0.084 4.084 17 N -0.953 5.953 18 Si 0.948 3.052 19 H -0.303 1.303 20 H -0.309 1.309 21 H -0.276 1.276 22 C 0.119 3.881 23 C -0.127 4.127 24 C -0.062 4.062 25 C -0.167 4.167 26 C 0.080 3.920 27 N -0.502 5.502 28 C 0.106 3.894 29 H 0.040 0.960 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.088 0.912 35 H 0.037 0.963 36 H 0.078 0.922 37 H 0.043 0.957 38 H 0.067 0.933 39 H 0.019 0.981 40 H 0.375 0.625 41 H 0.363 0.637 42 H 0.234 0.766 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.176 0.824 46 H 0.165 0.835 47 H 0.153 0.847 48 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.306 19.752 2.727 20.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.076 4.076 3 H 0.157 0.843 4 C 0.305 3.695 5 O -0.464 6.464 6 N -0.326 5.326 7 C -0.013 4.013 8 C -0.161 4.161 9 C -0.148 4.148 10 C 0.085 3.915 11 C -0.004 4.004 12 O -0.371 6.371 13 N -0.348 5.348 14 C -0.317 4.317 15 H 0.107 0.893 16 C -0.275 4.275 17 N -0.606 5.606 18 Si 0.782 3.218 19 H -0.232 1.232 20 H -0.237 1.237 21 H -0.201 1.201 22 C -0.004 4.004 23 C -0.130 4.130 24 C -0.088 4.088 25 C -0.186 4.186 26 C -0.077 4.077 27 N -0.210 5.210 28 C -0.052 4.052 29 H 0.059 0.941 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.056 0.944 36 H 0.097 0.903 37 H 0.062 0.938 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.222 0.778 41 H 0.194 0.806 42 H 0.043 0.957 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.193 0.807 46 H 0.183 0.817 47 H 0.171 0.829 48 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -2.888 18.672 2.287 19.032 hybrid contribution 0.943 -1.515 0.022 1.785 sum -1.945 17.157 2.309 17.421 Atomic orbital electron populations 1.21647 0.91063 1.02282 1.03395 1.20290 0.98615 1.00662 0.88036 0.84254 1.20999 0.81257 0.82043 0.85162 1.90656 1.57529 1.36977 1.61212 1.47978 1.14915 1.36421 1.33307 1.21991 0.90794 0.88984 0.99558 1.21637 0.96408 0.99791 0.98278 1.21726 0.98616 0.96630 0.97781 1.20355 0.93038 0.89808 0.88304 1.22636 0.84927 0.96079 0.96773 1.86736 1.32397 1.77202 1.40775 1.42459 1.05836 1.46197 1.40316 1.19643 0.89210 1.13110 1.09692 0.89345 1.25310 0.97449 1.02816 1.01943 1.69852 1.20585 1.38819 1.31317 0.85482 0.80978 0.78803 0.76549 1.23199 1.23734 1.20115 1.21614 0.93546 0.96012 0.89259 1.20391 1.00519 0.94933 0.97111 1.21787 0.93392 1.01484 0.92129 1.22376 1.01083 0.95255 0.99931 1.23002 0.93797 0.93579 0.97327 1.67535 1.11293 1.38816 1.03381 1.22289 0.96867 0.92201 0.93794 0.94120 0.89314 0.91104 0.88265 0.87998 0.89360 0.94424 0.90338 0.93844 0.91531 0.96297 0.77807 0.80572 0.95665 0.87806 0.92318 0.80677 0.81749 0.82938 0.86488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.51 71.98 0.61 -2.29 16 2 C -0.05 -1.35 2.12 -12.28 -0.03 -1.38 16 3 H 0.14 2.20 6.13 -2.39 -0.01 2.18 16 4 C 0.52 17.10 6.45 87.66 0.57 17.67 16 5 O -0.58 -24.49 15.61 -3.02 -0.05 -24.54 16 6 N -0.60 -17.65 2.87 -819.72 -2.36 -20.01 16 7 C 0.11 2.33 6.24 86.22 0.54 2.87 16 8 C -0.12 -3.47 5.91 30.53 0.18 -3.29 16 9 C -0.11 -3.39 4.39 30.62 0.13 -3.25 16 10 C 0.18 6.42 0.68 3.68 0.00 6.42 16 11 C 0.08 2.55 6.08 71.98 0.44 2.99 16 12 O -0.57 -20.53 9.96 -148.98 -1.48 -22.02 16 13 N -0.71 -34.90 4.22 -303.01 -1.28 -36.17 16 14 C -0.18 -10.12 8.29 84.03 0.70 -9.42 16 15 H 0.09 4.85 5.30 -2.91 -0.02 4.84 16 16 C -0.08 -4.97 5.50 84.86 0.47 -4.50 16 17 N -0.95 -60.63 13.06 21.65 0.28 -60.35 16 18 Si 0.95 49.44 29.55 68.60 2.03 51.46 16 19 H -0.30 -15.96 7.11 99.48 0.71 -15.25 16 20 H -0.31 -16.56 7.11 99.48 0.71 -15.85 16 21 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 22 C 0.12 3.83 5.13 86.36 0.44 4.28 16 23 C -0.13 -3.81 4.68 -19.77 -0.09 -3.90 16 24 C -0.06 -1.51 9.18 22.47 0.21 -1.30 16 25 C -0.17 -4.50 10.11 22.36 0.23 -4.27 16 26 C 0.08 2.82 11.18 84.68 0.95 3.77 16 27 N -0.50 -21.49 10.36 -195.84 -2.03 -23.52 16 28 C 0.11 4.23 9.95 84.67 0.84 5.07 16 29 H 0.04 1.17 7.16 -2.38 -0.02 1.15 16 30 H 0.09 1.54 8.14 -2.38 -0.02 1.52 16 31 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 32 H 0.10 1.69 4.41 -2.39 -0.01 1.68 16 33 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 34 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 35 H 0.04 1.47 7.53 -2.39 -0.02 1.45 16 36 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.04 1.64 6.84 -2.38 -0.02 1.62 16 38 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 40 H 0.37 9.87 9.12 -74.06 -0.68 9.20 16 41 H 0.36 20.67 7.65 -92.71 -0.71 19.96 16 42 H 0.23 15.17 8.31 -92.71 -0.77 14.39 16 43 H 0.10 2.51 8.14 -2.39 -0.02 2.49 16 44 H 0.06 2.30 7.04 -2.38 -0.02 2.29 16 45 H 0.18 2.48 7.66 -2.91 -0.02 2.45 16 46 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 47 H 0.15 4.88 8.06 -2.91 -0.02 4.85 16 48 H 0.12 5.24 7.57 -2.91 -0.02 5.21 16 Total: -1.00 -83.14 377.33 0.91 -82.24 By element: Atomic # 1 Polarization: 43.84 SS G_CDS: -0.39 Total: 43.45 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 6.18 Total: 9.46 kcal Atomic # 7 Polarization: -134.67 SS G_CDS: -5.38 Total: -140.05 kcal Atomic # 8 Polarization: -45.03 SS G_CDS: -1.53 Total: -46.56 kcal Atomic # 14 Polarization: 49.44 SS G_CDS: 2.03 Total: 51.46 kcal Total: -83.14 0.91 -82.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700241636.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.339 kcal (2) G-P(sol) polarization free energy of solvation -83.140 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds