Wall clock time and date at job start Tue Mar 31 2020 18:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08995 * 109.46955 * 2 1 4 4 C 1.50701 * 109.47105 * 239.99461 * 2 1 3 5 5 O 1.21280 * 120.00003 * 333.32804 * 4 2 1 6 6 N 1.34772 * 120.00001 * 153.31620 * 4 2 1 7 7 C 1.46935 * 120.62939 * 5.13750 * 6 4 2 8 8 C 1.53622 * 108.54244 * 126.36736 * 7 6 4 9 9 C 1.53042 * 109.24444 * 54.85684 * 8 7 6 10 10 C 1.53045 * 109.53685 * 298.50987 * 9 8 7 11 11 C 1.52999 * 109.49826 * 181.31479 * 10 9 8 12 12 O 1.42904 * 109.46907 * 65.16387 * 11 10 9 13 13 N 1.46503 * 109.52542 * 301.39881 * 10 9 8 14 14 C 1.36934 * 119.99871 * 299.85525 * 13 10 9 15 15 H 1.08005 * 119.99901 * 359.97438 * 14 13 10 16 16 C 1.38811 * 119.99856 * 180.02562 * 14 13 10 17 17 N 1.31610 * 120.00347 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99922 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.46908 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47205 * 119.99814 * 18 16 14 21 21 H 1.48495 * 109.47032 * 240.00138 * 18 16 14 22 22 C 1.46929 * 120.63511 * 185.41550 * 6 4 2 23 23 C 1.50698 * 109.47031 * 120.00056 * 2 1 3 24 24 C 1.38680 * 120.41715 * 239.99793 * 23 2 1 25 25 C 1.38622 * 118.42029 * 180.02562 * 24 23 2 26 26 C 1.38233 * 119.16517 * 0.02562 * 25 24 23 27 27 N 1.31855 * 120.75598 * 359.97438 * 26 25 24 28 28 C 1.31882 * 121.73149 * 359.70788 * 27 26 25 29 29 H 1.09001 * 109.47137 * 175.18997 * 1 2 3 30 30 H 1.08996 * 109.47231 * 55.18867 * 1 2 3 31 31 H 1.09003 * 109.46776 * 295.18494 * 1 2 3 32 32 H 1.09001 * 109.58211 * 246.19733 * 7 6 4 33 33 H 1.08997 * 109.58546 * 6.62252 * 7 6 4 34 34 H 1.08999 * 109.63374 * 294.86595 * 8 7 6 35 35 H 1.09002 * 109.46168 * 174.74160 * 8 7 6 36 36 H 1.08995 * 109.46056 * 178.49255 * 9 8 7 37 37 H 1.08994 * 109.46144 * 58.53137 * 9 8 7 38 38 H 1.08993 * 109.47102 * 185.16417 * 11 10 9 39 39 H 1.09003 * 109.46960 * 305.16431 * 11 10 9 40 40 H 0.96699 * 114.00084 * 180.02562 * 12 11 10 41 41 H 0.96997 * 120.00295 * 119.85202 * 13 10 9 42 42 H 0.97006 * 120.00470 * 179.97438 * 17 16 14 43 43 H 1.09001 * 109.57934 * 353.37491 * 22 6 4 44 44 H 1.08999 * 109.58722 * 113.80126 * 22 6 4 45 45 H 1.07998 * 120.78976 * 0.02562 * 24 23 2 46 46 H 1.07997 * 120.42008 * 180.02562 * 25 24 23 47 47 H 1.07998 * 119.62183 * 179.97438 * 26 25 24 48 48 H 1.08005 * 119.61929 * 180.30961 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 1.3496 -1.5612 -1.7606 6 7 3.2402 -0.4005 -1.7417 7 6 4.1259 0.5454 -1.0490 8 6 5.4923 -0.1260 -0.8432 9 6 6.0245 -0.6111 -2.1935 10 6 5.0628 -1.6471 -2.7804 11 6 5.6121 -2.1556 -4.1147 12 8 6.8327 -2.8636 -3.8885 13 7 4.9242 -2.7694 -1.8490 14 6 6.0233 -3.5058 -1.4959 15 1 6.9923 -3.2595 -1.9043 16 6 5.8919 -4.5695 -0.6138 17 7 4.7110 -4.8700 -0.1164 18 14 7.3914 -5.5737 -0.1315 19 1 8.5906 -5.0358 -0.8228 20 1 7.5891 -5.4936 1.3381 21 1 7.1865 -6.9903 -0.5269 22 6 3.6939 -0.9973 -3.0053 23 6 2.0323 -0.7104 1.2304 24 6 2.8302 -0.0448 2.1490 25 6 3.2696 -0.7383 3.2659 26 6 2.9011 -2.0610 3.4257 27 7 2.1410 -2.6620 2.5315 28 6 1.6996 -2.0317 1.4604 29 1 -0.3633 -1.0241 -0.0862 30 1 -0.3633 0.5866 -0.8437 31 1 -0.3633 0.4373 0.9300 32 1 4.2448 1.4444 -1.6538 33 1 3.6964 0.8071 -0.0820 34 1 5.3852 -0.9750 -0.1680 35 1 6.1897 0.5939 -0.4147 36 1 7.0061 -1.0643 -2.0554 37 1 6.1079 0.2345 -2.8761 38 1 4.8848 -2.8235 -4.5761 39 1 5.7998 -1.3099 -4.7763 40 1 7.2385 -3.2148 -4.6929 41 1 4.0539 -2.9908 -1.4824 42 1 4.6190 -5.6136 0.4997 43 1 2.9791 -1.7537 -3.3295 44 1 3.7783 -0.2214 -3.7663 45 1 3.1027 0.9892 1.9977 46 1 3.8921 -0.2514 4.0020 47 1 3.2396 -2.6084 4.2929 48 1 1.0748 -2.5558 0.7522 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001700241640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:43 Heat of formation + Delta-G solvation = -52.220962 kcal Electronic energy + Delta-G solvation = -31381.177873 eV Core-core repulsion = 27435.604241 eV Total energy + Delta-G solvation = -3945.573632 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.84034 -40.70637 -39.32528 -37.13482 -35.77056 -35.33604 -33.63868 -32.98335 -32.64188 -30.68802 -30.45635 -27.21281 -26.63568 -25.63634 -25.12097 -24.45473 -23.20401 -22.89500 -20.40336 -19.56785 -19.14678 -18.44041 -18.04927 -17.89057 -17.03933 -16.89321 -16.71645 -16.22488 -15.78847 -15.60302 -15.41759 -15.03826 -14.94826 -14.80255 -14.67444 -14.39508 -14.07229 -13.89176 -13.79816 -13.51223 -13.44903 -13.28036 -13.03252 -12.90936 -12.69542 -12.59167 -12.37756 -12.28886 -11.95280 -11.75784 -11.67779 -11.49003 -11.25253 -10.98293 -10.75261 -10.54135 -10.52148 -10.27448 -9.82060 -9.48554 -8.82854 -7.73252 -4.98461 0.18330 0.44710 1.42070 1.43572 1.53393 1.65094 2.09594 2.64636 2.91308 3.44149 3.52226 3.58034 3.71408 3.79191 3.82326 3.90890 3.99160 4.08276 4.12047 4.17516 4.28693 4.30990 4.40238 4.43702 4.51044 4.57067 4.64471 4.65546 4.71972 4.82015 4.84774 4.90789 4.91736 4.95107 5.02897 5.05464 5.21251 5.22514 5.32790 5.36578 5.57895 5.63289 5.72559 5.84640 5.94131 6.44845 6.51303 7.14527 7.15401 7.24868 7.52635 8.25578 8.48430 9.48914 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010215 B = 0.006152 C = 0.004617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.539923 B = 4550.244087 C = 6062.538368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.053 4.053 3 H 0.142 0.858 4 C 0.514 3.486 5 O -0.583 6.583 6 N -0.597 5.597 7 C 0.108 3.892 8 C -0.123 4.123 9 C -0.110 4.110 10 C 0.174 3.826 11 C 0.075 3.925 12 O -0.564 6.564 13 N -0.712 5.712 14 C -0.172 4.172 15 H 0.094 0.906 16 C -0.095 4.095 17 N -0.970 5.970 18 Si 0.952 3.048 19 H -0.267 1.267 20 H -0.306 1.306 21 H -0.309 1.309 22 C 0.118 3.882 23 C -0.128 4.128 24 C -0.063 4.063 25 C -0.164 4.164 26 C 0.075 3.925 27 N -0.516 5.516 28 C 0.099 3.901 29 H 0.040 0.960 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.107 0.893 33 H 0.097 0.903 34 H 0.031 0.969 35 H 0.089 0.911 36 H 0.042 0.958 37 H 0.083 0.917 38 H 0.020 0.980 39 H 0.069 0.931 40 H 0.373 0.627 41 H 0.362 0.638 42 H 0.234 0.766 43 H 0.059 0.941 44 H 0.109 0.891 45 H 0.181 0.819 46 H 0.172 0.828 47 H 0.162 0.838 48 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.186 21.684 -0.534 21.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.075 4.075 3 H 0.160 0.840 4 C 0.303 3.697 5 O -0.463 6.463 6 N -0.328 5.328 7 C -0.013 4.013 8 C -0.161 4.161 9 C -0.149 4.149 10 C 0.083 3.917 11 C -0.006 4.006 12 O -0.370 6.370 13 N -0.350 5.350 14 C -0.305 4.305 15 H 0.111 0.889 16 C -0.285 4.285 17 N -0.624 5.624 18 Si 0.785 3.215 19 H -0.191 1.191 20 H -0.235 1.235 21 H -0.237 1.237 22 C -0.006 4.006 23 C -0.131 4.131 24 C -0.088 4.088 25 C -0.183 4.183 26 C -0.082 4.082 27 N -0.225 5.225 28 C -0.057 4.057 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.104 0.896 32 H 0.125 0.875 33 H 0.115 0.885 34 H 0.050 0.950 35 H 0.107 0.893 36 H 0.061 0.939 37 H 0.101 0.899 38 H 0.039 0.961 39 H 0.087 0.913 40 H 0.220 0.780 41 H 0.194 0.806 42 H 0.043 0.957 43 H 0.077 0.923 44 H 0.127 0.873 45 H 0.198 0.802 46 H 0.189 0.811 47 H 0.179 0.821 48 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -2.698 20.483 -0.082 20.660 hybrid contribution 0.746 -1.579 -0.262 1.766 sum -1.952 18.904 -0.344 19.008 Atomic orbital electron populations 1.21664 0.91030 1.02352 1.03567 1.20296 0.98676 1.00627 0.87898 0.84049 1.21045 0.81106 0.82190 0.85353 1.90673 1.58473 1.34041 1.63110 1.47993 1.16189 1.44866 1.23729 1.22169 0.89265 0.91432 0.98443 1.21778 0.96736 0.99790 0.97774 1.21767 0.98560 0.97635 0.96939 1.20414 0.93505 0.88347 0.89436 1.22652 0.86059 0.94603 0.97243 1.86811 1.38772 1.75270 1.36119 1.42532 1.07257 1.33245 1.51938 1.19781 0.89943 1.05143 1.15626 0.88855 1.25382 0.97993 1.02003 1.03112 1.69882 1.22899 1.31985 1.37659 0.85322 0.80991 0.78496 0.76655 1.19120 1.23491 1.23730 1.21651 0.94368 0.98104 0.86448 1.20471 1.00438 0.94896 0.97262 1.21884 0.93244 1.01677 0.92039 1.22458 1.00924 0.95113 0.99829 1.23174 0.93738 0.93902 0.97338 1.67560 1.11694 1.39440 1.03772 1.22378 0.97053 0.92467 0.93837 0.94091 0.90587 0.89565 0.87531 0.88494 0.94993 0.89268 0.93885 0.89855 0.96142 0.91302 0.77979 0.80647 0.95699 0.92267 0.87345 0.80194 0.81076 0.82080 0.86356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.59 71.98 0.62 -2.29 16 2 C -0.05 -1.30 2.11 -12.28 -0.03 -1.32 16 3 H 0.14 2.10 6.45 -2.39 -0.02 2.08 16 4 C 0.51 17.18 6.43 87.66 0.56 17.74 16 5 O -0.58 -25.16 15.42 -3.03 -0.05 -25.21 16 6 N -0.60 -17.76 2.86 -818.05 -2.34 -20.10 16 7 C 0.11 2.34 6.17 86.51 0.53 2.87 16 8 C -0.12 -3.53 5.95 30.82 0.18 -3.35 16 9 C -0.11 -3.43 4.43 30.62 0.14 -3.29 16 10 C 0.17 6.39 0.68 3.68 0.00 6.39 16 11 C 0.07 2.49 6.09 71.98 0.44 2.93 16 12 O -0.56 -20.83 9.91 -148.98 -1.48 -22.31 16 13 N -0.71 -35.89 4.22 -302.98 -1.28 -37.17 16 14 C -0.17 -9.67 8.14 84.03 0.68 -8.99 16 15 H 0.09 5.17 5.29 -2.91 -0.02 5.15 16 16 C -0.09 -5.78 5.50 84.86 0.47 -5.32 16 17 N -0.97 -64.44 13.06 21.65 0.28 -64.16 16 18 Si 0.95 50.30 29.55 68.60 2.03 52.33 16 19 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 20 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 21 H -0.31 -16.68 7.11 99.48 0.71 -15.98 16 22 C 0.12 3.77 5.15 86.36 0.44 4.21 16 23 C -0.13 -3.70 4.53 -19.77 -0.09 -3.79 16 24 C -0.06 -1.39 8.85 22.47 0.20 -1.19 16 25 C -0.16 -3.94 10.11 22.36 0.23 -3.71 16 26 C 0.08 2.45 11.18 84.69 0.95 3.40 16 27 N -0.52 -21.37 10.36 -195.84 -2.03 -23.40 16 28 C 0.10 3.91 10.05 84.67 0.85 4.76 16 29 H 0.04 1.19 7.12 -2.39 -0.02 1.17 16 30 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 31 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.46 16 33 H 0.10 1.70 4.07 -2.39 -0.01 1.69 16 34 H 0.03 1.29 7.53 -2.39 -0.02 1.28 16 35 H 0.09 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.04 1.61 6.98 -2.39 -0.02 1.60 16 37 H 0.08 1.93 8.14 -2.39 -0.02 1.92 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 40 H 0.37 10.00 9.12 -74.06 -0.68 9.32 16 41 H 0.36 21.33 7.65 -92.71 -0.71 20.62 16 42 H 0.23 15.64 8.31 -92.70 -0.77 14.87 16 43 H 0.06 2.32 7.00 -2.39 -0.02 2.30 16 44 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 45 H 0.18 2.11 7.56 -2.91 -0.02 2.09 16 46 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 47 H 0.16 4.53 8.06 -2.91 -0.02 4.51 16 48 H 0.12 5.27 7.62 -2.91 -0.02 5.25 16 Total: -1.00 -88.21 376.62 0.93 -87.28 By element: Atomic # 1 Polarization: 44.07 SS G_CDS: -0.39 Total: 43.68 kcal Atomic # 6 Polarization: 2.88 SS G_CDS: 6.18 Total: 9.06 kcal Atomic # 7 Polarization: -139.47 SS G_CDS: -5.37 Total: -144.83 kcal Atomic # 8 Polarization: -45.99 SS G_CDS: -1.52 Total: -47.51 kcal Atomic # 14 Polarization: 50.30 SS G_CDS: 2.03 Total: 52.33 kcal Total: -88.21 0.93 -87.28 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001700241640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.059 kcal (2) G-P(sol) polarization free energy of solvation -88.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.280 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.221 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds