Wall clock time and date at job start Tue Mar 31 2020 17:13:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45782 * 2 1 4 4 C 1.53036 * 109.46030 * 240.02504 * 2 1 3 5 5 C 1.53186 * 109.31386 * 178.61596 * 4 2 1 6 6 N 1.46922 * 108.77899 * 54.63645 * 5 4 2 7 7 C 1.34774 * 120.63425 * 126.36833 * 6 5 4 8 8 O 1.21684 * 119.99858 * 186.40049 * 7 6 5 9 9 C 1.46717 * 119.99855 * 6.39801 * 7 6 5 10 10 C 1.36339 * 126.64402 * 34.59005 * 9 7 6 11 11 N 1.33691 * 107.45650 * 179.70414 * 10 9 7 12 12 C 1.30621 * 108.99167 * 0.42699 * 11 10 9 13 13 C 1.50702 * 125.42124 * 179.83307 * 12 11 10 14 14 C 1.52998 * 117.50044 * 59.68942 * 13 12 11 15 15 C 1.52997 * 117.49985 * 351.06658 * 13 12 11 16 16 O 1.33662 * 109.15421 * 359.56218 * 12 11 10 17 17 C 1.46934 * 118.73804 * 306.64756 * 6 5 4 18 18 H 1.09006 * 109.58290 * 293.56799 * 17 6 5 19 19 C 1.52991 * 109.58840 * 173.14270 * 17 6 5 20 20 N 1.46503 * 109.47450 * 70.15121 * 19 17 6 21 21 C 1.36938 * 120.00006 * 173.79681 * 20 19 17 22 22 H 1.08000 * 119.99911 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99933 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99901 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00176 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47090 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47567 * 119.99814 * 25 23 21 28 28 H 1.48502 * 109.47476 * 239.99929 * 25 23 21 29 29 C 1.52769 * 109.00778 * 53.30289 * 17 6 5 30 30 H 1.09001 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47394 * 299.97286 * 1 2 3 32 32 H 1.08995 * 109.47182 * 59.97593 * 1 2 3 33 33 H 1.09004 * 109.49761 * 58.66488 * 4 2 1 34 34 H 1.09001 * 109.52773 * 298.58565 * 4 2 1 35 35 H 1.09006 * 109.58842 * 294.84763 * 5 4 2 36 36 H 1.08998 * 109.70864 * 174.49667 * 5 4 2 37 37 H 1.08001 * 126.27303 * 359.96324 * 10 9 7 38 38 H 1.09005 * 115.55765 * 205.37863 * 13 12 11 39 39 H 1.09002 * 117.49992 * 145.01681 * 14 13 12 40 40 H 1.09000 * 117.49804 * 0.02562 * 14 13 12 41 41 H 1.09000 * 117.50109 * 0.02562 * 15 13 12 42 42 H 1.08996 * 117.50054 * 214.97646 * 15 13 12 43 43 H 1.09001 * 109.46824 * 190.15623 * 19 17 6 44 44 H 1.09006 * 109.47057 * 310.15065 * 19 17 6 45 45 H 0.96999 * 119.99597 * 353.80386 * 20 19 17 46 46 H 0.97004 * 119.99746 * 179.97438 * 24 23 21 47 47 H 1.08990 * 109.56033 * 185.55531 * 29 17 6 48 48 H 1.08998 * 109.38375 * 65.51665 * 29 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5713 -0.6888 -1.2641 6 7 4.0679 -1.2489 0.0002 7 6 4.9614 -2.2578 0.0003 8 8 5.2770 -2.7909 1.0477 9 6 5.5535 -2.7135 -1.2624 10 6 5.8644 -1.9401 -2.3412 11 7 6.3870 -2.7434 -3.2734 12 6 6.4014 -3.9681 -2.8195 13 6 6.9108 -5.1718 -3.5697 14 6 8.3751 -5.1602 -4.0130 15 6 7.2613 -4.9868 -5.0475 16 8 5.8978 -3.9830 -1.5814 17 6 3.5671 -0.6922 1.2644 18 1 3.9097 0.3370 1.3716 19 6 4.0830 -1.5320 2.4346 20 7 5.5244 -1.3208 2.5893 21 6 6.1867 -1.8711 3.6541 22 1 5.6464 -2.4612 4.3796 23 6 7.5523 -1.6705 3.8010 24 7 8.2106 -0.9509 2.9171 25 14 8.4558 -2.4218 5.2529 26 1 7.4956 -3.1791 6.0954 27 1 9.5119 -3.3406 4.7573 28 1 9.0782 -1.3424 6.0610 29 6 2.0398 -0.7206 1.2502 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8897 33 1 1.6572 -0.2210 -2.1398 34 1 1.6978 -1.7558 -1.2387 35 1 3.9143 0.3407 -1.3674 36 1 3.9437 -1.2833 -2.0983 37 1 5.7193 -0.8732 -2.4257 38 1 6.4832 -6.1285 -3.2698 39 1 8.9110 -6.1094 -4.0047 40 1 8.9702 -4.2823 -3.7616 41 1 7.1239 -3.9945 -5.4770 42 1 7.0645 -5.8218 -5.7198 43 1 3.5716 -1.2330 3.3496 44 1 3.8893 -2.5866 2.2382 45 1 6.0096 -0.7910 1.9376 46 1 9.1649 -0.8104 3.0199 47 1 1.6572 -0.2205 2.1398 48 1 1.6973 -1.7553 1.2388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001707160102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:52 Heat of formation + Delta-G solvation = 71.795359 kcal Electronic energy + Delta-G solvation = -30000.941842 eV Core-core repulsion = 26060.745961 eV Total energy + Delta-G solvation = -3940.195881 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.26680 -40.18809 -37.53989 -37.25144 -34.84032 -34.53313 -33.68679 -32.19555 -30.02193 -29.86710 -28.24182 -25.54057 -24.86316 -23.83829 -22.79471 -22.69860 -22.48053 -21.62666 -20.52561 -20.11616 -19.42270 -17.42487 -17.14529 -16.66532 -16.56173 -15.64969 -15.18371 -14.95941 -14.81157 -14.56870 -14.43264 -14.09619 -13.96971 -13.57637 -13.28146 -12.96864 -12.83176 -12.79325 -12.44711 -12.28995 -11.96727 -11.78328 -11.77587 -11.62427 -11.46419 -11.12323 -10.95864 -10.90488 -10.86540 -10.74605 -10.73345 -10.61451 -10.41734 -10.26667 -9.86726 -9.54460 -8.84530 -8.75011 -8.41802 -8.21203 -6.58151 -5.59213 -2.78956 1.14978 2.26271 2.50366 3.40428 3.46749 3.55190 3.58584 3.60965 3.64223 4.01651 4.50893 4.61363 4.65152 4.67820 4.71925 4.78107 4.80087 4.96135 5.03639 5.11613 5.25123 5.40711 5.41208 5.45608 5.50086 5.55157 5.60807 5.70434 5.73027 5.74273 5.77206 5.77967 5.86921 5.89832 5.93073 5.99733 6.07920 6.09450 6.11362 6.27801 6.36330 6.49166 6.58690 6.85460 7.20992 7.67074 7.73424 7.85619 8.58524 8.67373 9.70053 10.28420 10.62448 11.64586 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007051 B = 0.005323 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.198768 B = 5258.952569 C = 8712.007348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.092 4.092 3 H 0.072 0.928 4 C -0.127 4.127 5 C 0.095 3.905 6 N -0.599 5.599 7 C 0.554 3.446 8 O -0.421 6.421 9 C -0.061 4.061 10 C -0.004 4.004 11 N -0.483 5.483 12 C 0.223 3.777 13 C -0.081 4.081 14 C -0.155 4.155 15 C -0.146 4.146 16 O -0.168 6.168 17 C 0.148 3.852 18 H 0.075 0.925 19 C 0.154 3.846 20 N -0.697 5.697 21 C -0.211 4.211 22 H 0.068 0.932 23 C -0.020 4.020 24 N -0.936 5.936 25 Si 0.903 3.097 26 H -0.282 1.282 27 H -0.294 1.294 28 H -0.294 1.294 29 C -0.122 4.122 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.052 0.948 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.088 0.912 37 H 0.192 0.808 38 H 0.134 0.866 39 H 0.108 0.892 40 H 0.103 0.897 41 H 0.111 0.889 42 H 0.106 0.894 43 H 0.021 0.979 44 H 0.044 0.956 45 H 0.379 0.621 46 H 0.250 0.750 47 H 0.076 0.924 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.126 -1.787 -16.979 20.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.111 4.111 3 H 0.091 0.909 4 C -0.165 4.165 5 C -0.028 4.028 6 N -0.338 5.338 7 C 0.336 3.664 8 O -0.289 6.289 9 C -0.118 4.118 10 C -0.146 4.146 11 N -0.212 5.212 12 C 0.018 3.982 13 C -0.100 4.100 14 C -0.192 4.192 15 C -0.183 4.183 16 O -0.052 6.052 17 C 0.045 3.955 18 H 0.092 0.908 19 C 0.027 3.973 20 N -0.340 5.340 21 C -0.343 4.343 22 H 0.086 0.914 23 C -0.215 4.215 24 N -0.586 5.586 25 Si 0.735 3.265 26 H -0.207 1.207 27 H -0.222 1.222 28 H -0.222 1.222 29 C -0.161 4.161 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.071 0.929 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.106 0.894 37 H 0.208 0.792 38 H 0.151 0.849 39 H 0.126 0.874 40 H 0.122 0.878 41 H 0.129 0.871 42 H 0.124 0.876 43 H 0.039 0.961 44 H 0.061 0.939 45 H 0.213 0.787 46 H 0.060 0.940 47 H 0.095 0.905 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -11.685 -2.117 -16.735 20.520 hybrid contribution 0.597 -0.264 1.174 1.343 sum -11.088 -2.381 -15.562 19.255 Atomic orbital electron populations 1.21811 0.95166 1.01728 1.01515 1.21128 0.95499 0.99673 0.94805 0.90920 1.21967 0.95091 1.01358 0.98118 1.22038 0.94434 0.99478 0.86835 1.47411 1.43337 1.36088 1.06916 1.16345 0.81482 0.83303 0.85230 1.91262 1.56398 1.52511 1.28695 1.23289 1.07442 0.82081 0.98966 1.23614 1.01002 1.01068 0.88956 1.70176 1.19332 1.00231 1.31471 1.25208 0.97313 0.94662 0.81020 1.20062 1.00424 0.92738 0.96799 1.23145 0.89749 1.04478 1.01872 1.23082 1.01150 1.04626 0.89418 1.84466 1.59990 1.29981 1.30798 1.21489 0.92726 0.98113 0.83149 0.90752 1.21014 0.86952 0.97325 0.92012 1.42304 1.02101 1.60613 1.28990 1.19223 0.90877 1.23919 1.00248 0.91447 1.24642 0.96467 1.01511 0.98896 1.69669 1.07725 1.44655 1.36597 0.86144 0.79837 0.78337 0.82146 1.20710 1.22191 1.22185 1.21915 0.94867 1.01411 0.97861 0.92791 0.92606 0.92869 0.90929 0.91576 0.91274 0.89353 0.79150 0.84866 0.87377 0.87835 0.87071 0.87553 0.96128 0.93856 0.78724 0.93975 0.90496 0.91400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.21 9.19 37.16 0.34 -0.87 16 2 C -0.09 -0.92 2.68 -90.58 -0.24 -1.16 16 3 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 4 C -0.13 -1.24 5.36 -26.62 -0.14 -1.38 16 5 C 0.10 1.11 5.30 -3.72 -0.02 1.09 16 6 N -0.60 -9.62 2.98 -166.99 -0.50 -10.12 16 7 C 0.55 11.14 7.02 -12.84 -0.09 11.05 16 8 O -0.42 -10.60 10.99 5.20 0.06 -10.55 16 9 C -0.06 -1.12 6.56 -36.84 -0.24 -1.36 16 10 C 0.00 -0.07 9.45 -17.43 -0.16 -0.23 16 11 N -0.48 -7.56 10.79 -10.81 -0.12 -7.68 16 12 C 0.22 3.45 7.86 -12.79 -0.10 3.35 16 13 C -0.08 -0.90 6.33 -91.77 -0.58 -1.48 16 14 C -0.15 -1.47 10.23 -26.73 -0.27 -1.74 16 15 C -0.15 -1.25 10.13 -26.73 -0.27 -1.52 16 16 O -0.17 -3.14 10.79 4.42 0.05 -3.09 16 17 C 0.15 2.42 2.91 -67.82 -0.20 2.22 16 18 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 19 C 0.15 3.31 4.86 -4.04 -0.02 3.29 16 20 N -0.70 -18.71 3.26 -59.91 -0.20 -18.90 16 21 C -0.21 -6.29 9.79 -15.06 -0.15 -6.44 16 22 H 0.07 1.98 7.83 -52.49 -0.41 1.57 16 23 C -0.02 -0.62 5.50 -17.43 -0.10 -0.72 16 24 N -0.94 -29.99 13.06 55.49 0.72 -29.27 16 25 Si 0.90 23.93 29.55 -169.99 -5.02 18.91 16 26 H -0.28 -7.23 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.90 7.11 56.52 0.40 -7.50 16 28 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 29 C -0.12 -1.51 4.61 -26.83 -0.12 -1.64 16 30 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.09 1.01 4.53 -51.93 -0.24 0.78 16 37 H 0.19 2.45 6.85 -52.49 -0.36 2.09 16 38 H 0.13 1.23 8.14 -51.93 -0.42 0.81 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.10 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.11 1.06 7.87 -51.93 -0.41 0.65 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.02 0.44 8.12 -51.93 -0.42 0.02 16 44 H 0.04 1.02 6.23 -51.93 -0.32 0.69 16 45 H 0.38 10.81 7.08 -40.82 -0.29 10.52 16 46 H 0.25 7.77 8.31 -40.82 -0.34 7.43 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 381.35 15.07 5.75 5.75 Total: -1.00 -36.37 381.35 -9.13 -45.50 By element: Atomic # 1 Polarization: 14.48 SS G_CDS: -7.50 Total: 6.98 kcal Atomic # 6 Polarization: 4.84 SS G_CDS: -2.37 Total: 2.47 kcal Atomic # 7 Polarization: -65.88 SS G_CDS: -0.08 Total: -65.96 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: 0.10 Total: -13.64 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -5.02 Total: 18.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.37 -9.13 -45.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707160102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.296 kcal (2) G-P(sol) polarization free energy of solvation -36.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.501 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.795 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds