Wall clock time and date at job start Tue Mar 31 2020 17:13:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.45782 * 2 1 4 4 C 1.53036 * 109.46030 * 240.02504 * 2 1 3 5 5 C 1.53186 * 109.31386 * 178.61596 * 4 2 1 6 6 N 1.46922 * 108.77899 * 54.63645 * 5 4 2 7 7 C 1.34774 * 120.63425 * 126.36833 * 6 5 4 8 8 O 1.21684 * 119.99858 * 186.40049 * 7 6 5 9 9 C 1.46717 * 119.99855 * 6.39801 * 7 6 5 10 10 C 1.36339 * 126.64402 * 34.59005 * 9 7 6 11 11 N 1.33691 * 107.45650 * 179.70414 * 10 9 7 12 12 C 1.30621 * 108.99167 * 0.42699 * 11 10 9 13 13 C 1.50702 * 125.42124 * 179.83307 * 12 11 10 14 14 C 1.52998 * 117.50044 * 59.68942 * 13 12 11 15 15 C 1.52997 * 117.49985 * 351.06658 * 13 12 11 16 16 O 1.33662 * 109.15421 * 359.56218 * 12 11 10 17 17 C 1.46934 * 118.73804 * 306.64756 * 6 5 4 18 18 H 1.09006 * 109.58290 * 293.56799 * 17 6 5 19 19 C 1.52991 * 109.58840 * 173.14270 * 17 6 5 20 20 N 1.46503 * 109.47450 * 70.15121 * 19 17 6 21 21 C 1.36938 * 120.00006 * 173.79681 * 20 19 17 22 22 H 1.08000 * 119.99911 * 0.02562 * 21 20 19 23 23 C 1.38807 * 119.99933 * 180.02562 * 21 20 19 24 24 N 1.31622 * 119.99901 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00176 * 180.02562 * 23 21 20 26 26 H 1.48505 * 109.47090 * 359.97438 * 25 23 21 27 27 H 1.48497 * 109.47567 * 119.99814 * 25 23 21 28 28 H 1.48502 * 109.47476 * 239.99929 * 25 23 21 29 29 C 1.52769 * 109.00778 * 53.30289 * 17 6 5 30 30 H 1.09001 * 109.47359 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47394 * 299.97286 * 1 2 3 32 32 H 1.08995 * 109.47182 * 59.97593 * 1 2 3 33 33 H 1.09004 * 109.49761 * 58.66488 * 4 2 1 34 34 H 1.09001 * 109.52773 * 298.58565 * 4 2 1 35 35 H 1.09006 * 109.58842 * 294.84763 * 5 4 2 36 36 H 1.08998 * 109.70864 * 174.49667 * 5 4 2 37 37 H 1.08001 * 126.27303 * 359.96324 * 10 9 7 38 38 H 1.09005 * 115.55765 * 205.37863 * 13 12 11 39 39 H 1.09002 * 117.49992 * 145.01681 * 14 13 12 40 40 H 1.09000 * 117.49804 * 0.02562 * 14 13 12 41 41 H 1.09000 * 117.50109 * 0.02562 * 15 13 12 42 42 H 1.08996 * 117.50054 * 214.97646 * 15 13 12 43 43 H 1.09001 * 109.46824 * 190.15623 * 19 17 6 44 44 H 1.09006 * 109.47057 * 310.15065 * 19 17 6 45 45 H 0.96999 * 119.99597 * 353.80386 * 20 19 17 46 46 H 0.97004 * 119.99746 * 179.97438 * 24 23 21 47 47 H 1.08990 * 109.56033 * 185.55531 * 29 17 6 48 48 H 1.08998 * 109.38375 * 65.51665 * 29 17 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0277 0.0000 4 6 2.0399 -0.7209 -1.2499 5 6 3.5713 -0.6888 -1.2641 6 7 4.0679 -1.2489 0.0002 7 6 4.9614 -2.2578 0.0003 8 8 5.2770 -2.7909 1.0477 9 6 5.5535 -2.7135 -1.2624 10 6 5.8644 -1.9401 -2.3412 11 7 6.3870 -2.7434 -3.2734 12 6 6.4014 -3.9681 -2.8195 13 6 6.9108 -5.1718 -3.5697 14 6 8.3751 -5.1602 -4.0130 15 6 7.2613 -4.9868 -5.0475 16 8 5.8978 -3.9830 -1.5814 17 6 3.5671 -0.6922 1.2644 18 1 3.9097 0.3370 1.3716 19 6 4.0830 -1.5320 2.4346 20 7 5.5244 -1.3208 2.5893 21 6 6.1867 -1.8711 3.6541 22 1 5.6464 -2.4612 4.3796 23 6 7.5523 -1.6705 3.8010 24 7 8.2106 -0.9509 2.9171 25 14 8.4558 -2.4218 5.2529 26 1 7.4956 -3.1791 6.0954 27 1 9.5119 -3.3406 4.7573 28 1 9.0782 -1.3424 6.0610 29 6 2.0398 -0.7206 1.2502 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5134 0.8902 32 1 -0.3633 0.5142 -0.8897 33 1 1.6572 -0.2210 -2.1398 34 1 1.6978 -1.7558 -1.2387 35 1 3.9143 0.3407 -1.3674 36 1 3.9437 -1.2833 -2.0983 37 1 5.7193 -0.8732 -2.4257 38 1 6.4832 -6.1285 -3.2698 39 1 8.9110 -6.1094 -4.0047 40 1 8.9702 -4.2823 -3.7616 41 1 7.1239 -3.9945 -5.4770 42 1 7.0645 -5.8218 -5.7198 43 1 3.5716 -1.2330 3.3496 44 1 3.8893 -2.5866 2.2382 45 1 6.0096 -0.7910 1.9376 46 1 9.1649 -0.8104 3.0199 47 1 1.6572 -0.2205 2.1398 48 1 1.6973 -1.7553 1.2388 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707160102.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:13:51 Heat of formation + Delta-G solvation = 45.942735 kcal Electronic energy + Delta-G solvation = -30002.062896 eV Core-core repulsion = 26060.745961 eV Total energy + Delta-G solvation = -3941.316935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -44.57622 -41.56074 -38.65932 -38.23862 -36.50237 -36.03193 -34.88264 -33.96109 -31.74698 -31.15937 -29.29317 -27.20591 -26.08811 -24.94828 -24.52866 -23.83138 -23.29632 -23.03695 -21.67025 -21.29255 -20.63227 -19.26087 -18.40206 -18.08219 -17.95582 -16.99769 -16.76419 -16.25104 -15.98946 -15.71926 -15.58809 -15.46633 -15.33976 -14.91902 -14.71974 -14.59654 -14.24762 -14.01947 -13.82026 -13.35350 -13.19523 -12.89777 -12.86203 -12.71551 -12.70641 -12.59960 -12.44312 -12.15696 -12.11799 -12.00517 -11.92531 -11.84678 -11.68517 -11.57677 -11.31006 -11.22708 -10.96877 -10.31426 -9.83181 -9.60699 -8.72332 -7.89880 -5.09647 -0.17691 1.00018 1.26658 1.39993 1.42955 1.52141 1.98064 2.22795 2.57396 2.76879 2.91792 3.41995 3.46123 3.66549 3.70751 3.77043 3.79266 3.87757 3.96369 3.99164 4.03962 4.25876 4.27801 4.39767 4.42734 4.48870 4.59580 4.63038 4.74707 4.77853 4.83005 4.86580 4.91203 4.92706 4.98171 5.00315 5.09964 5.11188 5.13439 5.21295 5.23695 5.31412 5.42879 5.48823 5.56668 5.70300 6.31089 6.31835 6.43042 7.18796 7.38125 8.16586 8.39097 9.35138 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.007051 B = 0.005323 C = 0.003213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3970.198768 B = 5258.952569 C = 8712.007348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 H 0.083 0.917 4 C -0.121 4.121 5 C 0.088 3.912 6 N -0.589 5.589 7 C 0.558 3.442 8 O -0.493 6.493 9 C -0.106 4.106 10 C 0.024 3.976 11 N -0.493 5.493 12 C 0.232 3.768 13 C -0.110 4.110 14 C -0.152 4.152 15 C -0.120 4.120 16 O -0.196 6.196 17 C 0.152 3.848 18 H 0.076 0.924 19 C 0.157 3.843 20 N -0.707 5.707 21 C -0.214 4.214 22 H 0.064 0.936 23 C -0.085 4.085 24 N -0.974 5.974 25 Si 0.968 3.032 26 H -0.269 1.269 27 H -0.300 1.300 28 H -0.288 1.288 29 C -0.113 4.113 30 H 0.050 0.950 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.220 0.780 38 H 0.152 0.848 39 H 0.135 0.865 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.141 0.859 43 H 0.024 0.976 44 H 0.021 0.979 45 H 0.367 0.633 46 H 0.245 0.755 47 H 0.088 0.912 48 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.619 -1.411 -19.448 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.106 4.106 3 H 0.101 0.899 4 C -0.159 4.159 5 C -0.033 4.033 6 N -0.326 5.326 7 C 0.342 3.658 8 O -0.366 6.366 9 C -0.162 4.162 10 C -0.117 4.117 11 N -0.222 5.222 12 C 0.028 3.972 13 C -0.129 4.129 14 C -0.190 4.190 15 C -0.157 4.157 16 O -0.082 6.082 17 C 0.050 3.950 18 H 0.094 0.906 19 C 0.030 3.970 20 N -0.348 5.348 21 C -0.347 4.347 22 H 0.082 0.918 23 C -0.276 4.276 24 N -0.627 5.627 25 Si 0.798 3.202 26 H -0.194 1.194 27 H -0.228 1.228 28 H -0.215 1.215 29 C -0.152 4.152 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.089 0.911 33 H 0.124 0.876 34 H 0.075 0.925 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.236 0.764 38 H 0.169 0.831 39 H 0.153 0.847 40 H 0.102 0.898 41 H 0.120 0.880 42 H 0.159 0.841 43 H 0.042 0.958 44 H 0.039 0.961 45 H 0.198 0.802 46 H 0.054 0.946 47 H 0.107 0.893 48 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.264 -1.708 -19.242 23.433 hybrid contribution 0.995 -0.452 1.724 2.041 sum -12.269 -2.160 -17.519 21.496 Atomic orbital electron populations 1.21763 0.93473 1.01892 1.02617 1.21120 0.96784 0.99633 0.93060 0.89863 1.21960 0.93108 1.01310 0.99487 1.22401 0.96115 1.00298 0.84534 1.47585 1.41682 1.34681 1.08611 1.16806 0.80927 0.82914 0.85146 1.91230 1.59034 1.55376 1.30994 1.23116 1.10801 0.82807 0.99503 1.24047 0.98185 1.01985 0.87526 1.70273 1.20213 1.00406 1.31344 1.26321 0.94878 0.96052 0.79979 1.20525 1.01970 0.91870 0.98561 1.23251 0.88885 1.05048 1.01825 1.23217 0.98841 1.05499 0.88105 1.84449 1.60886 1.30532 1.32330 1.21422 0.95314 0.96677 0.81579 0.90594 1.21033 0.84474 0.97052 0.94415 1.42349 1.03963 1.60486 1.28011 1.19552 0.91453 1.22974 1.00688 0.91793 1.25409 0.97304 1.02928 1.01913 1.69829 1.07455 1.46766 1.38682 0.85126 0.78373 0.77487 0.79228 1.19386 1.22832 1.21530 1.21878 0.91387 1.01642 1.00276 0.93123 0.92211 0.91125 0.87650 0.92532 0.88980 0.89055 0.76376 0.83074 0.84713 0.89807 0.88000 0.84072 0.95823 0.96134 0.80186 0.94609 0.89338 0.92302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 71.98 0.66 -1.20 16 2 C -0.09 -1.47 2.68 -10.77 -0.03 -1.50 16 3 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 4 C -0.12 -1.99 5.36 30.67 0.16 -1.82 16 5 C 0.09 1.87 5.30 86.36 0.46 2.33 16 6 N -0.59 -19.05 2.98 -800.45 -2.38 -21.44 16 7 C 0.56 23.53 7.02 86.46 0.61 24.14 16 8 O -0.49 -26.59 10.99 -4.29 -0.05 -26.64 16 9 C -0.11 -4.05 6.56 24.04 0.16 -3.89 16 10 C 0.02 0.75 9.45 83.97 0.79 1.55 16 11 N -0.49 -15.08 10.79 -302.88 -3.27 -18.35 16 12 C 0.23 7.16 7.86 88.29 0.69 7.86 16 13 C -0.11 -2.30 6.33 -11.54 -0.07 -2.37 16 14 C -0.15 -2.61 10.23 30.59 0.31 -2.30 16 15 C -0.12 -1.72 10.13 30.59 0.31 -1.41 16 16 O -0.20 -7.60 10.79 -7.08 -0.08 -7.68 16 17 C 0.15 5.04 2.91 44.83 0.13 5.17 16 18 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 19 C 0.16 7.03 4.86 86.38 0.42 7.45 16 20 N -0.71 -39.88 3.26 -343.45 -1.12 -41.00 16 21 C -0.21 -13.32 9.79 84.03 0.82 -12.50 16 22 H 0.06 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.08 -5.36 5.50 84.86 0.47 -4.89 16 24 N -0.97 -64.89 13.06 21.65 0.28 -64.61 16 25 Si 0.97 50.89 29.55 68.60 2.03 52.91 16 26 H -0.27 -13.40 7.11 99.48 0.71 -12.69 16 27 H -0.30 -15.95 7.11 99.48 0.71 -15.24 16 28 H -0.29 -14.72 7.11 99.48 0.71 -14.02 16 29 C -0.11 -2.68 4.61 30.53 0.14 -2.54 16 30 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.11 1.15 8.14 -2.38 -0.02 1.13 16 34 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 36 H 0.09 1.92 4.53 -2.39 -0.01 1.91 16 37 H 0.22 5.21 6.85 -2.91 -0.02 5.19 16 38 H 0.15 2.55 8.14 -2.38 -0.02 2.53 16 39 H 0.13 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.10 1.70 7.87 -2.39 -0.02 1.68 16 42 H 0.14 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.02 1.04 8.12 -2.39 -0.02 1.02 16 44 H 0.02 1.05 6.23 -2.38 -0.01 1.03 16 45 H 0.37 22.01 7.08 -92.71 -0.66 21.35 16 46 H 0.25 15.80 8.31 -92.70 -0.77 15.03 16 47 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -85.33 381.35 1.77 -83.57 By element: Atomic # 1 Polarization: 28.86 SS G_CDS: 0.32 Total: 29.17 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 6.04 Total: 14.06 kcal Atomic # 7 Polarization: -138.90 SS G_CDS: -6.49 Total: -145.39 kcal Atomic # 8 Polarization: -34.19 SS G_CDS: -0.12 Total: -34.31 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.03 Total: 52.91 kcal Total: -85.33 1.77 -83.57 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707160102.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.508 kcal (2) G-P(sol) polarization free energy of solvation -85.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.178 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds