Wall clock time and date at job start Tue Mar 31 2020 17:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00369 * 2 1 4 4 C 1.50699 * 109.47339 * 179.97438 * 3 2 1 5 5 C 1.38349 * 120.35126 * 269.97581 * 4 3 2 6 6 N 1.31924 * 121.07967 * 180.02562 * 5 4 3 7 7 C 1.31696 * 121.87721 * 0.02562 * 6 5 4 8 8 C 1.39516 * 120.57118 * 359.97438 * 7 6 5 9 9 C 1.47838 * 120.56025 * 180.02562 * 8 7 6 10 10 O 1.21558 * 119.99788 * 204.34715 * 9 8 7 11 11 N 1.34773 * 120.00151 * 24.35085 * 9 8 7 12 12 C 1.47424 * 125.64902 * 5.51860 * 11 9 8 13 13 C 1.55127 * 104.72444 * 155.81858 * 12 11 9 14 14 H 1.08997 * 110.93960 * 155.29350 * 13 12 11 15 15 C 1.53004 * 111.19253 * 279.19229 * 13 12 11 16 16 C 1.55154 * 101.48532 * 37.29509 * 13 12 11 17 17 H 1.08993 * 110.72395 * 82.69659 * 16 13 12 18 18 C 1.53001 * 110.71910 * 205.97081 * 16 13 12 19 19 N 1.46505 * 109.47001 * 179.97438 * 18 16 13 20 20 C 1.36932 * 120.00142 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00113 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00307 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00077 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99742 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47234 * 90.00046 * 24 22 20 26 26 H 1.48506 * 109.46884 * 209.99980 * 24 22 20 27 27 H 1.48494 * 109.47383 * 329.99917 * 24 22 20 28 28 C 1.47026 * 125.64885 * 185.82876 * 11 9 8 29 29 C 1.38359 * 120.34062 * 90.00072 * 4 3 2 30 30 H 1.08993 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47552 * 300.00613 * 1 2 3 32 32 H 1.09004 * 109.46617 * 60.00479 * 1 2 3 33 33 H 1.09001 * 109.46699 * 59.99481 * 3 2 1 34 34 H 1.08998 * 109.46640 * 300.00200 * 3 2 1 35 35 H 1.08005 * 119.45873 * 0.04829 * 5 4 3 36 36 H 1.08006 * 119.71257 * 179.97438 * 7 6 5 37 37 H 1.08998 * 110.36971 * 274.75055 * 12 11 9 38 38 H 1.09003 * 110.36431 * 37.06934 * 12 11 9 39 39 H 1.08995 * 109.47118 * 172.18400 * 15 13 12 40 40 H 1.09005 * 109.46881 * 292.18715 * 15 13 12 41 41 H 1.09004 * 109.46729 * 52.18492 * 15 13 12 42 42 H 1.09003 * 109.47245 * 299.97378 * 18 16 13 43 43 H 1.09005 * 109.47217 * 59.97892 * 18 16 13 44 44 H 0.97000 * 119.99710 * 0.02562 * 19 18 16 45 45 H 0.96996 * 120.00386 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.87804 * 300.43700 * 28 11 9 47 47 H 1.08999 * 109.88472 * 61.60433 * 28 11 9 48 48 H 1.07992 * 120.85965 * 0.25013 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2090 1.1319 1.1948 6 7 5.5241 1.0282 1.2121 7 6 6.2320 0.9725 0.1030 8 6 5.6049 1.0216 -1.1423 9 6 6.3998 0.9585 -2.3872 10 8 5.9555 1.4285 -3.4164 11 7 7.6169 0.3797 -2.3810 12 6 8.2262 -0.3276 -1.2400 13 6 9.2548 -1.2962 -1.8803 14 1 10.0469 -1.5456 -1.1742 15 6 8.5719 -2.5616 -2.4032 16 6 9.8026 -0.4362 -3.0497 17 1 10.5821 0.2401 -2.6990 18 6 10.3247 -1.3272 -4.1786 19 7 10.8339 -0.4888 -5.2667 20 6 11.3559 -1.0693 -6.3917 21 1 11.3918 -2.1454 -6.4770 22 6 11.8388 -0.2749 -7.4225 23 7 12.3400 -0.8330 -8.5040 24 14 11.7773 1.5862 -7.2747 25 1 13.0303 2.0744 -6.6447 26 1 11.6365 2.1856 -8.6261 27 1 10.6163 1.9780 -6.4360 28 6 8.5596 0.3548 -3.5089 29 6 4.2098 1.1310 -1.1932 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.6672 1.1746 2.1281 36 1 7.3073 0.8882 0.1580 37 1 8.7277 0.3795 -0.5792 38 1 7.4682 -0.8877 -0.6923 39 1 9.2909 -3.1559 -2.9671 40 1 8.1972 -3.1460 -1.5627 41 1 7.7412 -2.2843 -3.0521 42 1 11.1283 -1.9593 -3.8005 43 1 9.5143 -1.9537 -4.5514 44 1 10.8020 0.4777 -5.1900 45 1 12.6772 -0.2779 -9.2245 46 1 8.1006 -0.1402 -4.3648 47 1 8.8454 1.3722 -3.7759 48 1 3.6919 1.1760 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:38 Heat of formation + Delta-G solvation = -17.259626 kcal Electronic energy + Delta-G solvation = -28480.917849 eV Core-core repulsion = 24536.860254 eV Total energy + Delta-G solvation = -3944.057595 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.18400 -39.89010 -38.26716 -37.96747 -34.97264 -33.49605 -33.08434 -32.14613 -31.36629 -29.44785 -27.96237 -27.09584 -26.13040 -25.94630 -24.32866 -23.29894 -22.52316 -21.48869 -19.89785 -19.44121 -17.90260 -17.48032 -17.30067 -16.94835 -16.85215 -16.36638 -16.01453 -15.57230 -15.37635 -14.87016 -14.60229 -14.14867 -13.98215 -13.75258 -13.53764 -13.47866 -13.34289 -12.95832 -12.88407 -12.63790 -12.59459 -12.46600 -12.21628 -11.96615 -11.89076 -11.74098 -11.32784 -10.92223 -10.62708 -10.59995 -10.40177 -10.38311 -10.26479 -10.24397 -10.07464 -9.71598 -9.58511 -9.51296 -8.89916 -8.72121 -7.23754 -5.76319 -3.12258 0.29059 0.72208 2.57612 2.74639 3.20321 3.39095 3.42171 3.47200 3.61863 3.89909 4.12284 4.28929 4.33930 4.46154 4.46609 4.50051 4.60152 4.64156 4.76205 4.79242 4.87670 4.92869 5.08539 5.10447 5.17618 5.21878 5.24259 5.28957 5.43789 5.54915 5.60221 5.63998 5.68393 5.70398 5.73522 5.88981 6.04813 6.07811 6.10275 6.16793 6.24859 6.33053 6.57574 6.58294 6.70611 7.34646 7.42562 7.97119 7.98905 8.42300 9.20946 9.93402 10.12302 11.41968 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.002421 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.802053 B =11561.168898 C =11985.245446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.108 3.892 4 C -0.153 4.153 5 C 0.139 3.861 6 N -0.486 5.486 7 C 0.128 3.872 8 C -0.179 4.179 9 C 0.574 3.426 10 O -0.530 6.530 11 N -0.608 5.608 12 C 0.093 3.907 13 C -0.095 4.095 14 H 0.095 0.905 15 C -0.146 4.146 16 C -0.106 4.106 17 H 0.087 0.913 18 C 0.167 3.833 19 N -0.757 5.757 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.883 3.117 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.276 1.276 28 C 0.115 3.885 29 C 0.002 3.998 30 H 0.088 0.912 31 H 0.043 0.957 32 H 0.044 0.956 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.161 0.839 36 H 0.172 0.828 37 H 0.076 0.924 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.053 0.947 41 H 0.057 0.943 42 H 0.033 0.967 43 H 0.035 0.965 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.399 2.840 24.449 31.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.031 3.969 4 C -0.155 4.155 5 C -0.018 4.018 6 N -0.194 5.194 7 C -0.029 4.029 8 C -0.184 4.184 9 C 0.362 3.638 10 O -0.407 6.407 11 N -0.341 5.341 12 C -0.030 4.030 13 C -0.115 4.115 14 H 0.113 0.887 15 C -0.203 4.203 16 C -0.126 4.126 17 H 0.105 0.895 18 C 0.040 3.960 19 N -0.402 5.402 20 C -0.374 4.374 21 H 0.108 0.892 22 C -0.191 4.191 23 N -0.581 5.581 24 Si 0.713 3.287 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.202 1.202 28 C -0.007 4.007 29 C -0.025 4.025 30 H 0.107 0.893 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.178 0.822 36 H 0.189 0.811 37 H 0.094 0.906 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.193 0.807 45 H 0.069 0.931 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.086 2.751 24.510 31.808 hybrid contribution -0.599 1.682 -0.859 1.982 sum -20.686 4.433 23.650 31.731 Atomic orbital electron populations 1.22789 0.80478 1.03160 1.00190 1.87979 1.20025 1.27022 1.95459 1.21230 0.88501 0.85510 1.01690 1.20546 0.95909 1.04843 0.94167 1.22910 0.90038 0.91323 0.97518 1.67828 1.07782 1.12969 1.30786 1.23671 1.01306 0.91314 0.86652 1.20963 0.94972 1.07406 0.95061 1.17640 0.79990 0.78486 0.87676 1.90824 1.69491 1.47447 1.32960 1.48384 1.15787 1.54529 1.15439 1.22832 0.96411 0.94542 0.89186 1.22385 0.97087 0.94848 0.97148 0.88673 1.21804 1.01138 0.96277 1.01060 1.22568 0.96086 0.97523 0.96388 0.89492 1.20706 0.96346 0.92420 0.86548 1.42732 1.75355 1.04072 1.18089 1.19029 1.31996 0.93645 0.92740 0.89192 1.24673 1.00768 0.97348 0.96318 1.69696 1.46673 1.34196 1.07564 0.86564 0.77769 0.87318 0.77009 1.21091 1.21707 1.20240 1.22117 0.88548 1.01077 0.88938 1.21616 0.92368 0.89530 0.98958 0.89314 0.93831 0.93782 0.91680 0.91773 0.82182 0.81104 0.90641 0.90132 0.91000 0.92788 0.92398 0.94896 0.94731 0.80702 0.93053 0.90075 0.91315 0.83548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.25 10.69 -35.23 -0.38 -3.63 16 3 C 0.11 0.73 6.08 36.01 0.22 0.95 16 4 C -0.15 -1.34 5.52 -104.54 -0.58 -1.92 16 5 C 0.14 1.19 10.85 -17.47 -0.19 1.00 16 6 N -0.49 -4.93 10.35 -12.91 -0.13 -5.06 16 7 C 0.13 1.29 9.26 -17.13 -0.16 1.14 16 8 C -0.18 -2.10 5.68 -104.82 -0.60 -2.69 16 9 C 0.57 8.35 7.66 -12.33 -0.09 8.26 16 10 O -0.53 -9.74 17.00 5.31 0.09 -9.65 16 11 N -0.61 -8.00 3.31 -171.49 -0.57 -8.56 16 12 C 0.09 0.89 4.47 -2.41 -0.01 0.88 16 13 C -0.10 -0.99 3.54 -88.35 -0.31 -1.30 16 14 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 15 C -0.15 -1.59 8.15 37.16 0.30 -1.29 16 16 C -0.11 -1.47 2.87 -88.79 -0.26 -1.73 16 17 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 18 C 0.17 3.01 4.52 -4.04 -0.02 2.99 16 19 N -0.76 -17.58 5.25 -59.90 -0.31 -17.90 16 20 C -0.24 -6.88 10.47 -15.06 -0.16 -7.04 16 21 H 0.09 2.70 8.06 -52.48 -0.42 2.28 16 22 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 23 N -0.93 -29.48 13.97 55.49 0.78 -28.70 16 24 Si 0.88 22.36 27.74 -169.99 -4.71 17.64 16 25 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 27 H -0.28 -6.63 6.52 56.52 0.37 -6.26 16 28 C 0.11 1.76 5.84 -3.06 -0.02 1.75 16 29 C 0.00 0.02 9.40 -38.87 -0.37 -0.35 16 30 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.04 0.16 8.14 -51.93 -0.42 -0.26 16 32 H 0.04 0.19 8.14 -51.93 -0.42 -0.23 16 33 H 0.07 0.30 8.09 -51.93 -0.42 -0.12 16 34 H 0.06 0.38 8.09 -51.93 -0.42 -0.04 16 35 H 0.16 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.17 1.43 4.60 -52.48 -0.24 1.19 16 37 H 0.08 0.57 6.86 -51.93 -0.36 0.22 16 38 H 0.08 0.69 6.73 -51.93 -0.35 0.34 16 39 H 0.07 0.84 6.76 -51.93 -0.35 0.49 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.73 7.91 -51.93 -0.41 0.32 16 42 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.03 0.65 6.67 -51.93 -0.35 0.30 16 44 H 0.36 8.24 5.38 -40.82 -0.22 8.02 16 45 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 46 H 0.08 1.44 7.77 -51.93 -0.40 1.04 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.15 1.56 7.91 -52.49 -0.42 1.14 16 LS Contribution 386.21 15.07 5.82 5.82 Total: -1.00 -35.51 386.21 -7.97 -43.48 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -7.33 Total: 4.62 kcal Atomic # 6 Polarization: 3.17 SS G_CDS: -1.21 Total: 1.95 kcal Atomic # 7 Polarization: -59.99 SS G_CDS: -0.24 Total: -60.23 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: -0.29 Total: -13.28 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.51 -7.97 -43.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.216 kcal (2) G-P(sol) polarization free energy of solvation -35.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds