Wall clock time and date at job start Tue Mar 31 2020 17:44:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42903 * 114.00369 * 2 1 4 4 C 1.50699 * 109.47339 * 179.97438 * 3 2 1 5 5 C 1.38349 * 120.35126 * 269.97581 * 4 3 2 6 6 N 1.31924 * 121.07967 * 180.02562 * 5 4 3 7 7 C 1.31696 * 121.87721 * 0.02562 * 6 5 4 8 8 C 1.39516 * 120.57118 * 359.97438 * 7 6 5 9 9 C 1.47838 * 120.56025 * 180.02562 * 8 7 6 10 10 O 1.21558 * 119.99788 * 204.34715 * 9 8 7 11 11 N 1.34773 * 120.00151 * 24.35085 * 9 8 7 12 12 C 1.47424 * 125.64902 * 5.51860 * 11 9 8 13 13 C 1.55127 * 104.72444 * 155.81858 * 12 11 9 14 14 H 1.08997 * 110.93960 * 155.29350 * 13 12 11 15 15 C 1.53004 * 111.19253 * 279.19229 * 13 12 11 16 16 C 1.55154 * 101.48532 * 37.29509 * 13 12 11 17 17 H 1.08993 * 110.72395 * 82.69659 * 16 13 12 18 18 C 1.53001 * 110.71910 * 205.97081 * 16 13 12 19 19 N 1.46505 * 109.47001 * 179.97438 * 18 16 13 20 20 C 1.36932 * 120.00142 * 179.97438 * 19 18 16 21 21 H 1.08003 * 120.00113 * 0.02562 * 20 19 18 22 22 C 1.38816 * 120.00307 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00077 * 180.02562 * 22 20 19 24 24 Si 1.86795 * 119.99742 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47234 * 90.00046 * 24 22 20 26 26 H 1.48506 * 109.46884 * 209.99980 * 24 22 20 27 27 H 1.48494 * 109.47383 * 329.99917 * 24 22 20 28 28 C 1.47026 * 125.64885 * 185.82876 * 11 9 8 29 29 C 1.38359 * 120.34062 * 90.00072 * 4 3 2 30 30 H 1.08993 * 109.47193 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47552 * 300.00613 * 1 2 3 32 32 H 1.09004 * 109.46617 * 60.00479 * 1 2 3 33 33 H 1.09001 * 109.46699 * 59.99481 * 3 2 1 34 34 H 1.08998 * 109.46640 * 300.00200 * 3 2 1 35 35 H 1.08005 * 119.45873 * 0.04829 * 5 4 3 36 36 H 1.08006 * 119.71257 * 179.97438 * 7 6 5 37 37 H 1.08998 * 110.36971 * 274.75055 * 12 11 9 38 38 H 1.09003 * 110.36431 * 37.06934 * 12 11 9 39 39 H 1.08995 * 109.47118 * 172.18400 * 15 13 12 40 40 H 1.09005 * 109.46881 * 292.18715 * 15 13 12 41 41 H 1.09004 * 109.46729 * 52.18492 * 15 13 12 42 42 H 1.09003 * 109.47245 * 299.97378 * 18 16 13 43 43 H 1.09005 * 109.47217 * 59.97892 * 18 16 13 44 44 H 0.97000 * 119.99710 * 0.02562 * 19 18 16 45 45 H 0.96996 * 120.00386 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.87804 * 300.43700 * 28 11 9 47 47 H 1.08999 * 109.88472 * 61.60433 * 28 11 9 48 48 H 1.07992 * 120.85965 * 0.25013 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2090 1.1319 1.1948 6 7 5.5241 1.0282 1.2121 7 6 6.2320 0.9725 0.1030 8 6 5.6049 1.0216 -1.1423 9 6 6.3998 0.9585 -2.3872 10 8 5.9555 1.4285 -3.4164 11 7 7.6169 0.3797 -2.3810 12 6 8.2262 -0.3276 -1.2400 13 6 9.2548 -1.2962 -1.8803 14 1 10.0469 -1.5456 -1.1742 15 6 8.5719 -2.5616 -2.4032 16 6 9.8026 -0.4362 -3.0497 17 1 10.5821 0.2401 -2.6990 18 6 10.3247 -1.3272 -4.1786 19 7 10.8339 -0.4888 -5.2667 20 6 11.3559 -1.0693 -6.3917 21 1 11.3918 -2.1454 -6.4770 22 6 11.8388 -0.2749 -7.4225 23 7 12.3400 -0.8330 -8.5040 24 14 11.7773 1.5862 -7.2747 25 1 13.0303 2.0744 -6.6447 26 1 11.6365 2.1856 -8.6261 27 1 10.6163 1.9780 -6.4360 28 6 8.5596 0.3548 -3.5089 29 6 4.2098 1.1310 -1.1932 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 3.6672 1.1746 2.1281 36 1 7.3073 0.8882 0.1580 37 1 8.7277 0.3795 -0.5792 38 1 7.4682 -0.8877 -0.6923 39 1 9.2909 -3.1559 -2.9671 40 1 8.1972 -3.1460 -1.5627 41 1 7.7412 -2.2843 -3.0521 42 1 11.1283 -1.9593 -3.8005 43 1 9.5143 -1.9537 -4.5514 44 1 10.8020 0.4777 -5.1900 45 1 12.6772 -0.2779 -9.2245 46 1 8.1006 -0.1402 -4.3648 47 1 8.8454 1.3722 -3.7759 48 1 3.6919 1.1760 -2.1397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716985349.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:37 Heat of formation + Delta-G solvation = -43.015744 kcal Electronic energy + Delta-G solvation = -28482.034718 eV Core-core repulsion = 24536.860254 eV Total energy + Delta-G solvation = -3945.174464 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06818 -40.80220 -39.22761 -38.69861 -36.66697 -34.54862 -34.08420 -33.27072 -32.92537 -30.79590 -28.51752 -28.08926 -27.38517 -26.49962 -25.52686 -24.35990 -23.76658 -22.72552 -20.91371 -20.68725 -19.51146 -18.63026 -18.07769 -17.67945 -17.48742 -17.35647 -16.89706 -16.64970 -16.20976 -16.13682 -15.88023 -15.58926 -15.09955 -14.79445 -14.73018 -14.43743 -14.29657 -14.15759 -14.08243 -13.85053 -13.53189 -13.38397 -13.20653 -13.07375 -12.90683 -12.79704 -12.69335 -12.39122 -12.18945 -11.86021 -11.74078 -11.61334 -11.47581 -11.39911 -11.05250 -10.97728 -10.75021 -10.52967 -10.25821 -9.80426 -9.29783 -8.04091 -5.36875 -0.48289 -0.02895 1.35537 1.39001 1.45441 1.57740 1.73745 2.46345 2.50779 2.99790 3.13556 3.26391 3.30078 3.46796 3.52667 3.68427 3.68685 3.72810 3.80866 3.94099 4.00768 4.14796 4.23156 4.29725 4.44518 4.46771 4.49567 4.53006 4.55310 4.60322 4.62092 4.74299 4.76528 4.83133 4.89013 4.91212 4.99875 5.00825 5.06229 5.17111 5.21390 5.28616 5.41287 5.47816 5.75194 6.14662 6.19853 6.31476 6.69533 6.88805 7.06963 7.83539 8.00967 9.17440 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.018690 B = 0.002421 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.802053 B =11561.168898 C =11985.245446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.106 3.894 4 C -0.150 4.150 5 C 0.145 3.855 6 N -0.496 5.496 7 C 0.136 3.864 8 C -0.195 4.195 9 C 0.570 3.430 10 O -0.584 6.584 11 N -0.605 5.605 12 C 0.091 3.909 13 C -0.084 4.084 14 H 0.131 0.869 15 C -0.146 4.146 16 C -0.096 4.096 17 H 0.104 0.896 18 C 0.165 3.835 19 N -0.760 5.760 20 C -0.231 4.231 21 H 0.059 0.941 22 C -0.065 4.065 23 N -0.983 5.983 24 Si 0.952 3.048 25 H -0.272 1.272 26 H -0.298 1.298 27 H -0.258 1.258 28 C 0.117 3.883 29 C -0.011 4.011 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.193 0.807 36 H 0.191 0.809 37 H 0.110 0.890 38 H 0.097 0.903 39 H 0.060 0.940 40 H 0.079 0.921 41 H 0.031 0.969 42 H 0.041 0.959 43 H 0.025 0.975 44 H 0.364 0.636 45 H 0.257 0.743 46 H 0.045 0.955 47 H 0.055 0.945 48 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.245 3.874 28.841 36.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.030 3.970 4 C -0.152 4.152 5 C -0.011 4.011 6 N -0.203 5.203 7 C -0.021 4.021 8 C -0.200 4.200 9 C 0.360 3.640 10 O -0.465 6.465 11 N -0.336 5.336 12 C -0.030 4.030 13 C -0.103 4.103 14 H 0.149 0.851 15 C -0.203 4.203 16 C -0.115 4.115 17 H 0.122 0.878 18 C 0.039 3.961 19 N -0.406 5.406 20 C -0.362 4.362 21 H 0.077 0.923 22 C -0.256 4.256 23 N -0.634 5.634 24 Si 0.779 3.221 25 H -0.198 1.198 26 H -0.225 1.225 27 H -0.183 1.183 28 C -0.006 4.006 29 C -0.038 4.038 30 H 0.111 0.889 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.210 0.790 36 H 0.207 0.793 37 H 0.128 0.872 38 H 0.115 0.885 39 H 0.079 0.921 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.197 0.803 45 H 0.066 0.934 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -20.944 3.760 28.989 35.960 hybrid contribution -0.445 1.221 -2.180 2.538 sum -21.389 4.981 26.809 34.656 Atomic orbital electron populations 1.22950 0.78979 1.03862 1.01294 1.87926 1.21759 1.27947 1.95711 1.21346 0.87070 0.85320 1.03296 1.20764 0.97143 1.03879 0.93426 1.23463 0.89744 0.89332 0.98579 1.67929 1.08532 1.13471 1.30405 1.23868 1.02119 0.90381 0.85781 1.20768 0.95040 1.09845 0.94325 1.18150 0.80190 0.77624 0.88052 1.90785 1.70746 1.49898 1.35047 1.48414 1.15190 1.54176 1.15856 1.23154 0.96623 0.94945 0.88276 1.22446 0.97957 0.93886 0.96056 0.85123 1.21800 1.00089 0.96940 1.01484 1.22456 0.95557 0.97533 0.95993 0.87760 1.20869 0.96022 0.92734 0.86509 1.42778 1.75074 1.04738 1.17990 1.19035 1.30545 0.92454 0.94148 0.92335 1.25490 1.01453 1.02519 0.96169 1.69874 1.48785 1.36017 1.08703 0.85453 0.78762 0.81046 0.76808 1.19771 1.22535 1.18297 1.21909 0.89522 1.00101 0.89050 1.21706 0.92406 0.90091 0.99589 0.88923 0.92041 0.93341 0.88824 0.91434 0.78989 0.79289 0.87238 0.88456 0.92142 0.90234 0.94942 0.94107 0.95745 0.80280 0.93382 0.93637 0.92613 0.84638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -6.25 10.69 -148.98 -1.59 -7.84 16 3 C 0.11 1.21 6.08 71.24 0.43 1.64 16 4 C -0.15 -2.36 5.52 -19.81 -0.11 -2.46 16 5 C 0.15 2.02 10.85 84.71 0.92 2.94 16 6 N -0.50 -8.43 10.35 -194.75 -2.01 -10.44 16 7 C 0.14 2.38 9.26 85.02 0.79 3.16 16 8 C -0.19 -4.39 5.68 -19.99 -0.11 -4.50 16 9 C 0.57 16.73 7.66 86.79 0.66 17.39 16 10 O -0.58 -22.56 17.00 -3.90 -0.07 -22.63 16 11 N -0.60 -15.36 3.31 -814.75 -2.70 -18.05 16 12 C 0.09 1.43 4.47 86.93 0.39 1.82 16 13 C -0.08 -1.48 3.54 -9.32 -0.03 -1.51 16 14 H 0.13 1.51 8.14 -2.39 -0.02 1.49 16 15 C -0.15 -2.94 8.15 71.98 0.59 -2.36 16 16 C -0.10 -2.49 2.87 -9.61 -0.03 -2.52 16 17 H 0.10 2.43 8.14 -2.39 -0.02 2.41 16 18 C 0.16 5.88 4.52 86.38 0.39 6.27 16 19 N -0.76 -35.34 5.25 -343.43 -1.80 -37.14 16 20 C -0.23 -13.31 10.47 84.04 0.88 -12.43 16 21 H 0.06 3.68 8.06 -2.91 -0.02 3.65 16 22 C -0.06 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.98 -64.07 13.97 21.65 0.30 -63.77 16 24 Si 0.95 46.75 27.74 68.60 1.90 48.66 16 25 H -0.27 -12.75 7.11 99.48 0.71 -12.05 16 26 H -0.30 -14.97 7.11 99.48 0.71 -14.26 16 27 H -0.26 -11.73 6.52 99.48 0.65 -11.08 16 28 C 0.12 3.59 5.84 86.73 0.51 4.10 16 29 C -0.01 -0.24 9.40 22.73 0.21 -0.03 16 30 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.35 8.14 -2.38 -0.02 0.33 16 33 H 0.09 0.52 8.09 -2.39 -0.02 0.50 16 34 H 0.07 0.71 8.09 -2.39 -0.02 0.69 16 35 H 0.19 1.34 8.06 -2.91 -0.02 1.32 16 36 H 0.19 2.41 4.60 -2.91 -0.01 2.40 16 37 H 0.11 1.08 6.86 -2.39 -0.02 1.07 16 38 H 0.10 1.29 6.73 -2.39 -0.02 1.27 16 39 H 0.06 1.35 6.76 -2.39 -0.02 1.34 16 40 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.03 0.81 7.91 -2.38 -0.02 0.79 16 42 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.02 0.94 6.67 -2.38 -0.02 0.92 16 44 H 0.36 16.33 5.38 -92.71 -0.50 15.83 16 45 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 46 H 0.05 1.71 7.77 -2.39 -0.02 1.69 16 47 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 48 H 0.14 3.05 7.91 -2.91 -0.02 3.03 16 Total: -1.00 -81.42 386.21 1.65 -79.78 By element: Atomic # 1 Polarization: 21.49 SS G_CDS: 0.41 Total: 21.90 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: 7.20 Total: 9.54 kcal Atomic # 7 Polarization: -123.19 SS G_CDS: -6.21 Total: -129.40 kcal Atomic # 8 Polarization: -28.81 SS G_CDS: -1.66 Total: -30.47 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 1.90 Total: 48.66 kcal Total: -81.42 1.65 -79.78 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985349.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.761 kcal (2) G-P(sol) polarization free energy of solvation -81.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds