Wall clock time and date at job start Tue Mar 31 2020 17:44:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00074 * 2 1 4 4 C 1.50695 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.38356 * 120.35024 * 269.97491 * 4 3 2 6 6 N 1.31916 * 121.08311 * 180.02562 * 5 4 3 7 7 C 1.31703 * 121.88009 * 359.65615 * 6 5 4 8 8 C 1.39520 * 120.56163 * 0.63351 * 7 6 5 9 9 C 1.47838 * 120.55735 * 179.67383 * 8 7 6 10 10 O 1.21549 * 120.00161 * 335.65143 * 9 8 7 11 11 N 1.34777 * 120.00026 * 155.64319 * 9 8 7 12 12 C 1.47423 * 125.64702 * 354.12044 * 11 9 8 13 13 C 1.54912 * 104.83480 * 204.09026 * 12 11 9 14 14 H 1.08996 * 111.00437 * 204.91582 * 13 12 11 15 15 C 1.53006 * 111.00370 * 81.06318 * 13 12 11 16 16 C 1.55157 * 101.58094 * 322.99312 * 13 12 11 17 17 H 1.08997 * 110.71688 * 277.13795 * 16 13 12 18 18 C 1.52998 * 110.87476 * 153.93194 * 16 13 12 19 19 N 1.46495 * 109.47308 * 177.54525 * 18 16 13 20 20 C 1.36940 * 120.00175 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99885 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00174 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00129 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99950 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47050 * 90.00794 * 24 22 20 26 26 H 1.48500 * 109.47419 * 210.00499 * 24 22 20 27 27 H 1.48502 * 109.47596 * 330.00789 * 24 22 20 28 28 C 1.47024 * 125.65120 * 174.07766 * 11 9 8 29 29 C 1.38352 * 120.35178 * 90.00149 * 4 3 2 30 30 H 1.08999 * 109.47169 * 59.99790 * 1 2 3 31 31 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46765 * 299.99965 * 1 2 3 33 33 H 1.08995 * 109.46853 * 59.99891 * 3 2 1 34 34 H 1.09003 * 109.47009 * 300.00015 * 3 2 1 35 35 H 1.08002 * 119.45522 * 0.02841 * 5 4 3 36 36 H 1.08000 * 119.71891 * 180.31106 * 7 6 5 37 37 H 1.09002 * 110.36882 * 322.92669 * 12 11 9 38 38 H 1.09001 * 110.36677 * 85.14390 * 12 11 9 39 39 H 1.09006 * 109.46986 * 307.81373 * 15 13 12 40 40 H 1.09000 * 109.46584 * 67.80540 * 15 13 12 41 41 H 1.08995 * 109.47002 * 187.80529 * 15 13 12 42 42 H 1.09003 * 109.47357 * 297.54788 * 18 16 13 43 43 H 1.09006 * 109.46611 * 57.54613 * 18 16 13 44 44 H 0.97002 * 120.00211 * 0.02562 * 19 18 16 45 45 H 0.97002 * 120.00077 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.88233 * 59.56142 * 28 11 9 47 47 H 1.09002 * 109.88242 * 298.39603 * 28 11 9 48 48 H 1.08002 * 120.85627 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2099 1.1315 1.1930 6 7 5.5249 1.0278 1.2093 7 6 6.2316 0.9653 0.0997 8 6 5.6039 1.0206 -1.1451 9 6 6.3978 0.9576 -2.3907 10 8 7.5652 1.2960 -2.3850 11 7 5.8271 0.5249 -3.5324 12 6 4.4663 -0.0283 -3.6568 13 6 4.5116 -0.9107 -4.9292 14 1 3.5193 -1.0149 -5.3679 15 6 5.1210 -2.2808 -4.6250 16 6 5.4430 -0.0801 -5.8512 17 1 4.8827 0.7050 -6.3588 18 6 6.1496 -0.9809 -6.8662 19 7 6.9740 -0.1602 -7.7567 20 6 7.7039 -0.7520 -8.7528 21 1 7.6721 -1.8238 -8.8817 22 6 8.4855 0.0256 -9.5963 23 7 9.1874 -0.5433 -10.5533 24 14 8.5410 1.8793 -9.3729 25 1 9.6389 2.2326 -8.4375 26 1 8.7815 2.5292 -10.6863 27 1 7.2468 2.3501 -8.8174 28 6 6.4583 0.5271 -4.8603 29 6 4.2089 1.1315 -1.1948 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.6688 1.1742 2.1267 36 1 7.3065 0.8757 0.1538 37 1 4.2216 -0.6336 -2.7839 38 1 3.7396 0.7753 -3.7761 39 1 6.0805 -2.1487 -4.1248 40 1 4.4478 -2.8420 -3.9771 41 1 5.2688 -2.8275 -5.5563 42 1 6.7833 -1.6945 -6.3395 43 1 5.4059 -1.5196 -7.4534 44 1 7.0029 0.8024 -7.6408 45 1 9.7332 0.0001 -11.1430 46 1 7.3647 -0.0780 -4.8409 47 1 6.6983 1.5488 -5.1549 48 1 3.6900 1.1723 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001716985350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:40 Heat of formation + Delta-G solvation = -17.658289 kcal Electronic energy + Delta-G solvation = -28798.260736 eV Core-core repulsion = 24854.185854 eV Total energy + Delta-G solvation = -3944.074882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.19228 -39.89460 -38.35085 -37.91127 -35.01236 -33.66077 -32.93606 -32.15896 -31.38259 -29.41269 -27.97127 -27.11532 -26.20540 -25.76305 -24.67425 -23.14175 -22.50451 -21.55892 -19.84334 -19.47933 -17.84461 -17.46705 -17.31268 -16.96055 -16.84752 -16.37875 -16.05503 -15.76980 -15.29892 -14.96441 -14.58654 -14.18170 -13.99101 -13.73493 -13.56491 -13.42936 -13.37580 -12.97070 -12.91241 -12.65022 -12.58417 -12.42686 -12.23983 -11.99105 -11.95162 -11.75903 -11.33507 -10.93174 -10.67207 -10.62092 -10.44703 -10.33681 -10.28482 -10.21658 -10.08456 -9.74831 -9.59504 -9.52190 -8.90834 -8.72469 -7.24865 -5.77218 -3.13286 0.31134 0.68771 2.55237 2.75993 3.22683 3.37451 3.41392 3.46456 3.57179 3.93850 4.14823 4.20083 4.29763 4.39518 4.45738 4.49995 4.59266 4.70541 4.72397 4.76987 4.86176 4.89534 5.06856 5.09412 5.17720 5.20279 5.23679 5.27040 5.42318 5.53579 5.57875 5.62385 5.63654 5.68943 5.70305 5.87468 6.03182 6.05919 6.10947 6.14925 6.24688 6.31551 6.54987 6.56173 6.68945 7.32012 7.48204 7.96408 7.98002 8.41424 9.19973 9.92411 10.11199 11.41088 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002709 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.915870 B =10333.877238 C =11205.080085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.108 3.892 4 C -0.154 4.154 5 C 0.140 3.860 6 N -0.487 5.487 7 C 0.164 3.836 8 C -0.179 4.179 9 C 0.574 3.426 10 O -0.528 6.528 11 N -0.608 5.608 12 C 0.096 3.904 13 C -0.096 4.096 14 H 0.094 0.906 15 C -0.145 4.145 16 C -0.106 4.106 17 H 0.086 0.914 18 C 0.168 3.832 19 N -0.757 5.757 20 C -0.245 4.245 21 H 0.090 0.910 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.883 3.117 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.278 1.278 28 C 0.114 3.886 29 C -0.033 4.033 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.043 0.957 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.160 0.840 36 H 0.170 0.830 37 H 0.081 0.919 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.035 0.965 43 H 0.032 0.968 44 H 0.360 0.640 45 H 0.260 0.740 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.666 2.731 24.313 32.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.031 3.969 4 C -0.156 4.156 5 C -0.017 4.017 6 N -0.194 5.194 7 C 0.006 3.994 8 C -0.184 4.184 9 C 0.362 3.638 10 O -0.405 6.405 11 N -0.342 5.342 12 C -0.027 4.027 13 C -0.115 4.115 14 H 0.112 0.888 15 C -0.203 4.203 16 C -0.126 4.126 17 H 0.104 0.896 18 C 0.041 3.959 19 N -0.402 5.402 20 C -0.375 4.375 21 H 0.108 0.892 22 C -0.190 4.190 23 N -0.581 5.581 24 Si 0.713 3.287 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.007 4.007 29 C -0.059 4.059 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.178 0.822 36 H 0.187 0.813 37 H 0.099 0.901 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.053 0.947 43 H 0.050 0.950 44 H 0.193 0.807 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.087 0.913 48 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -19.335 2.566 25.030 31.732 hybrid contribution -0.612 1.690 -0.837 1.983 sum -19.947 4.256 24.193 31.643 Atomic orbital electron populations 1.22796 0.80456 1.03194 1.00197 1.87983 1.20017 1.26942 1.95456 1.21223 0.88533 0.85541 1.01632 1.20539 0.95831 1.04956 0.94245 1.22929 0.90059 0.91189 0.97572 1.67873 1.07796 1.13037 1.30693 1.23079 1.00936 0.89508 0.85884 1.20974 0.94313 1.07489 0.95597 1.17657 0.86255 0.77930 0.81933 1.90831 1.15807 1.48941 1.84926 1.48395 1.16053 1.61844 1.07874 1.22755 0.83881 0.96567 0.99458 1.22352 1.00048 0.95126 0.93974 0.88791 1.21800 1.00855 0.95237 1.02373 1.22565 0.95973 0.98622 0.95403 0.89596 1.20683 0.92897 0.92522 0.89811 1.42732 1.55342 1.04931 1.37242 1.19029 1.18903 0.94023 1.05515 0.89183 1.24669 0.99223 0.97375 0.97779 1.69699 1.33105 1.34467 1.20846 0.86570 0.77742 0.87210 0.77129 1.20926 1.21721 1.20407 1.22124 0.97036 1.01808 0.79774 1.22188 0.92912 0.91414 0.99341 0.93756 0.89277 0.93868 0.91720 0.91908 0.82234 0.81274 0.90088 0.91119 0.92361 0.92776 0.91037 0.94732 0.94973 0.80715 0.93037 0.90035 0.91334 0.83197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 11.01 101.05 1.11 1.24 16 2 O -0.38 -2.82 10.69 -35.23 -0.38 -3.20 16 3 C 0.11 0.62 6.08 36.00 0.22 0.84 16 4 C -0.15 -1.23 5.52 -104.54 -0.58 -1.80 16 5 C 0.14 1.19 10.85 -17.47 -0.19 1.00 16 6 N -0.49 -5.29 10.35 -12.91 -0.13 -5.42 16 7 C 0.16 1.88 10.76 -17.13 -0.18 1.69 16 8 C -0.18 -2.05 5.68 -104.82 -0.60 -2.65 16 9 C 0.57 8.21 7.66 -12.33 -0.09 8.12 16 10 O -0.53 -9.55 16.96 5.32 0.09 -9.46 16 11 N -0.61 -7.88 3.31 -171.63 -0.57 -8.45 16 12 C 0.10 0.91 4.46 -2.53 -0.01 0.90 16 13 C -0.10 -0.99 3.54 -88.47 -0.31 -1.30 16 14 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 15 C -0.15 -1.58 8.16 37.16 0.30 -1.28 16 16 C -0.11 -1.47 2.84 -88.79 -0.25 -1.72 16 17 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 18 C 0.17 3.02 4.45 -4.05 -0.02 3.01 16 19 N -0.76 -17.54 5.28 -59.91 -0.32 -17.86 16 20 C -0.24 -6.89 10.47 -15.06 -0.16 -7.04 16 21 H 0.09 2.70 8.06 -52.49 -0.42 2.28 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.43 13.97 55.49 0.78 -28.65 16 24 Si 0.88 22.28 27.73 -169.99 -4.71 17.57 16 25 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.29 -7.42 7.11 56.52 0.40 -7.02 16 27 H -0.28 -6.53 6.52 56.52 0.37 -6.16 16 28 C 0.11 1.73 5.95 -3.06 -0.02 1.71 16 29 C -0.03 -0.29 7.88 -38.87 -0.31 -0.60 16 30 H 0.04 0.15 8.14 -51.93 -0.42 -0.27 16 31 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.04 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.06 0.26 8.09 -51.93 -0.42 -0.16 16 34 H 0.06 0.29 8.09 -51.93 -0.42 -0.13 16 35 H 0.16 0.92 8.06 -52.49 -0.42 0.49 16 36 H 0.17 1.88 7.85 -52.49 -0.41 1.46 16 37 H 0.08 0.71 6.74 -51.93 -0.35 0.36 16 38 H 0.07 0.53 6.84 -51.93 -0.36 0.18 16 39 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 40 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.83 6.80 -51.93 -0.35 0.48 16 42 H 0.03 0.64 6.80 -51.93 -0.35 0.29 16 43 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 44 H 0.36 8.21 5.46 -40.82 -0.22 7.99 16 45 H 0.26 7.80 8.31 -40.82 -0.34 7.46 16 46 H 0.08 1.42 7.73 -51.93 -0.40 1.02 16 47 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 48 H 0.15 1.12 4.68 -52.49 -0.25 0.87 16 LS Contribution 386.39 15.07 5.82 5.82 Total: -1.00 -35.23 386.39 -7.94 -43.17 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -7.34 Total: 4.30 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -1.18 Total: 2.18 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.24 Total: -60.38 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: -0.29 Total: -12.66 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -4.71 Total: 17.57 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.23 -7.94 -43.17 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.510 kcal (2) G-P(sol) polarization free energy of solvation -35.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.168 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds