Wall clock time and date at job start Tue Mar 31 2020 17:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42905 * 114.00074 * 2 1 4 4 C 1.50695 * 109.47000 * 180.02562 * 3 2 1 5 5 C 1.38356 * 120.35024 * 269.97491 * 4 3 2 6 6 N 1.31916 * 121.08311 * 180.02562 * 5 4 3 7 7 C 1.31703 * 121.88009 * 359.65615 * 6 5 4 8 8 C 1.39520 * 120.56163 * 0.63351 * 7 6 5 9 9 C 1.47838 * 120.55735 * 179.67383 * 8 7 6 10 10 O 1.21549 * 120.00161 * 335.65143 * 9 8 7 11 11 N 1.34777 * 120.00026 * 155.64319 * 9 8 7 12 12 C 1.47423 * 125.64702 * 354.12044 * 11 9 8 13 13 C 1.54912 * 104.83480 * 204.09026 * 12 11 9 14 14 H 1.08996 * 111.00437 * 204.91582 * 13 12 11 15 15 C 1.53006 * 111.00370 * 81.06318 * 13 12 11 16 16 C 1.55157 * 101.58094 * 322.99312 * 13 12 11 17 17 H 1.08997 * 110.71688 * 277.13795 * 16 13 12 18 18 C 1.52998 * 110.87476 * 153.93194 * 16 13 12 19 19 N 1.46495 * 109.47308 * 177.54525 * 18 16 13 20 20 C 1.36940 * 120.00175 * 180.02562 * 19 18 16 21 21 H 1.08000 * 119.99885 * 359.97438 * 20 19 18 22 22 C 1.38809 * 120.00174 * 180.02562 * 20 19 18 23 23 N 1.31618 * 120.00129 * 179.97438 * 22 20 19 24 24 Si 1.86799 * 119.99950 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.47050 * 90.00794 * 24 22 20 26 26 H 1.48500 * 109.47419 * 210.00499 * 24 22 20 27 27 H 1.48502 * 109.47596 * 330.00789 * 24 22 20 28 28 C 1.47024 * 125.65120 * 174.07766 * 11 9 8 29 29 C 1.38352 * 120.35178 * 90.00149 * 4 3 2 30 30 H 1.08999 * 109.47169 * 59.99790 * 1 2 3 31 31 H 1.08996 * 109.47135 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46765 * 299.99965 * 1 2 3 33 33 H 1.08995 * 109.46853 * 59.99891 * 3 2 1 34 34 H 1.09003 * 109.47009 * 300.00015 * 3 2 1 35 35 H 1.08002 * 119.45522 * 0.02841 * 5 4 3 36 36 H 1.08000 * 119.71891 * 180.31106 * 7 6 5 37 37 H 1.09002 * 110.36882 * 322.92669 * 12 11 9 38 38 H 1.09001 * 110.36677 * 85.14390 * 12 11 9 39 39 H 1.09006 * 109.46986 * 307.81373 * 15 13 12 40 40 H 1.09000 * 109.46584 * 67.80540 * 15 13 12 41 41 H 1.08995 * 109.47002 * 187.80529 * 15 13 12 42 42 H 1.09003 * 109.47357 * 297.54788 * 18 16 13 43 43 H 1.09006 * 109.46611 * 57.54613 * 18 16 13 44 44 H 0.97002 * 120.00211 * 0.02562 * 19 18 16 45 45 H 0.97002 * 120.00077 * 179.97438 * 23 22 20 46 46 H 1.09000 * 109.88233 * 59.56142 * 28 11 9 47 47 H 1.09002 * 109.88242 * 298.39603 * 28 11 9 48 48 H 1.08002 * 120.85627 * 359.97438 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.2099 1.1315 1.1930 6 7 5.5249 1.0278 1.2093 7 6 6.2316 0.9653 0.0997 8 6 5.6039 1.0206 -1.1451 9 6 6.3978 0.9576 -2.3907 10 8 7.5652 1.2960 -2.3850 11 7 5.8271 0.5249 -3.5324 12 6 4.4663 -0.0283 -3.6568 13 6 4.5116 -0.9107 -4.9292 14 1 3.5193 -1.0149 -5.3679 15 6 5.1210 -2.2808 -4.6250 16 6 5.4430 -0.0801 -5.8512 17 1 4.8827 0.7050 -6.3588 18 6 6.1496 -0.9809 -6.8662 19 7 6.9740 -0.1602 -7.7567 20 6 7.7039 -0.7520 -8.7528 21 1 7.6721 -1.8238 -8.8817 22 6 8.4855 0.0256 -9.5963 23 7 9.1874 -0.5433 -10.5533 24 14 8.5410 1.8793 -9.3729 25 1 9.6389 2.2326 -8.4375 26 1 8.7815 2.5292 -10.6863 27 1 7.2468 2.3501 -8.8174 28 6 6.4583 0.5271 -4.8603 29 6 4.2089 1.1315 -1.1948 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8901 33 1 1.6886 1.8464 0.8899 34 1 1.6886 1.8464 -0.8900 35 1 3.6688 1.1742 2.1267 36 1 7.3065 0.8757 0.1538 37 1 4.2216 -0.6336 -2.7839 38 1 3.7396 0.7753 -3.7761 39 1 6.0805 -2.1487 -4.1248 40 1 4.4478 -2.8420 -3.9771 41 1 5.2688 -2.8275 -5.5563 42 1 6.7833 -1.6945 -6.3395 43 1 5.4059 -1.5196 -7.4534 44 1 7.0029 0.8024 -7.6408 45 1 9.7332 0.0001 -11.1430 46 1 7.3647 -0.0780 -4.8409 47 1 6.6983 1.5488 -5.1549 48 1 3.6900 1.1723 -2.1411 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716985350.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:44:39 Heat of formation + Delta-G solvation = -43.144857 kcal Electronic energy + Delta-G solvation = -28799.365917 eV Core-core repulsion = 24854.185854 eV Total energy + Delta-G solvation = -3945.180062 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.06409 -40.79739 -39.24185 -38.58685 -36.68154 -34.72131 -33.92342 -33.24473 -32.92842 -30.77913 -28.40300 -28.08847 -27.38061 -26.36732 -25.67789 -24.47092 -23.49708 -22.86732 -20.83550 -20.69345 -19.50660 -18.52390 -18.07680 -17.70424 -17.48388 -17.27023 -16.89968 -16.66310 -16.23524 -15.99061 -15.94824 -15.58549 -15.13001 -14.80005 -14.71804 -14.47422 -14.31463 -14.10334 -13.96628 -13.85670 -13.53389 -13.31475 -13.14913 -13.08825 -12.90106 -12.86710 -12.68182 -12.30481 -12.17569 -11.85271 -11.72359 -11.63015 -11.50993 -11.35724 -10.98966 -10.98032 -10.70025 -10.50031 -10.27775 -9.78313 -9.30239 -8.04168 -5.37196 -0.46461 -0.00790 1.34694 1.39808 1.45475 1.57532 1.75118 2.46471 2.55082 2.99853 3.16457 3.27807 3.34796 3.40160 3.50961 3.68571 3.70320 3.75024 3.83618 3.95820 4.06947 4.16544 4.23153 4.32917 4.45421 4.47833 4.54376 4.56343 4.60997 4.64000 4.67755 4.73929 4.75696 4.84179 4.90322 4.98615 4.99011 5.02787 5.03871 5.16504 5.20255 5.28025 5.44461 5.47019 5.75137 6.19788 6.23047 6.31239 6.73775 6.89311 7.06918 7.83227 8.00731 9.17402 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.016874 B = 0.002709 C = 0.002498 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1658.915870 B =10333.877238 C =11205.080085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.410 6.410 3 C 0.107 3.893 4 C -0.146 4.146 5 C 0.139 3.861 6 N -0.505 5.505 7 C 0.150 3.850 8 C -0.191 4.191 9 C 0.571 3.429 10 O -0.581 6.581 11 N -0.605 5.605 12 C 0.095 3.905 13 C -0.085 4.085 14 H 0.129 0.871 15 C -0.146 4.146 16 C -0.096 4.096 17 H 0.102 0.898 18 C 0.166 3.834 19 N -0.760 5.760 20 C -0.232 4.232 21 H 0.058 0.942 22 C -0.064 4.064 23 N -0.983 5.983 24 Si 0.950 3.050 25 H -0.286 1.286 26 H -0.294 1.294 27 H -0.247 1.247 28 C 0.116 3.884 29 C -0.025 4.025 30 H 0.054 0.946 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.086 0.914 34 H 0.080 0.920 35 H 0.189 0.811 36 H 0.158 0.842 37 H 0.096 0.904 38 H 0.106 0.894 39 H 0.032 0.968 40 H 0.078 0.922 41 H 0.059 0.941 42 H 0.024 0.976 43 H 0.040 0.960 44 H 0.364 0.636 45 H 0.258 0.742 46 H 0.046 0.954 47 H 0.057 0.943 48 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.124 4.114 26.205 36.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.330 6.330 3 C 0.031 3.969 4 C -0.148 4.148 5 C -0.018 4.018 6 N -0.213 5.213 7 C -0.008 4.008 8 C -0.196 4.196 9 C 0.360 3.640 10 O -0.462 6.462 11 N -0.337 5.337 12 C -0.026 4.026 13 C -0.104 4.104 14 H 0.147 0.853 15 C -0.203 4.203 16 C -0.115 4.115 17 H 0.120 0.880 18 C 0.040 3.960 19 N -0.406 5.406 20 C -0.363 4.363 21 H 0.076 0.924 22 C -0.255 4.255 23 N -0.634 5.634 24 Si 0.778 3.222 25 H -0.213 1.213 26 H -0.220 1.220 27 H -0.171 1.171 28 C -0.007 4.007 29 C -0.051 4.051 30 H 0.073 0.927 31 H 0.109 0.891 32 H 0.073 0.927 33 H 0.104 0.896 34 H 0.099 0.901 35 H 0.206 0.794 36 H 0.175 0.825 37 H 0.114 0.886 38 H 0.124 0.876 39 H 0.051 0.949 40 H 0.097 0.903 41 H 0.078 0.922 42 H 0.042 0.958 43 H 0.058 0.942 44 H 0.197 0.803 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -23.878 3.929 26.962 36.229 hybrid contribution 0.708 1.112 -1.332 1.874 sum -23.169 5.041 25.630 34.916 Atomic orbital electron populations 1.22939 0.79038 1.03783 1.01294 1.87935 1.21590 1.27706 1.95721 1.21339 0.86522 0.85469 1.03617 1.20820 0.97364 1.03201 0.93385 1.23496 0.89331 0.89654 0.99291 1.67889 1.09183 1.13900 1.30334 1.22981 1.00828 0.90470 0.86473 1.20716 0.95321 1.09699 0.93863 1.18147 0.85878 0.77019 0.82924 1.90794 1.18196 1.51411 1.85794 1.48419 1.17327 1.61276 1.06642 1.23063 0.82405 0.97613 0.99532 1.22411 1.00535 0.93990 0.93449 0.85263 1.21798 1.00352 0.96114 1.02053 1.22441 0.95874 0.98755 0.94429 0.87957 1.20837 0.92393 0.92810 0.89950 1.42770 1.55431 1.05545 1.36814 1.19033 1.18445 0.92832 1.05956 0.92373 1.25486 0.99557 1.02550 0.97948 1.69877 1.34750 1.36358 1.22437 0.85475 0.78916 0.81042 0.76784 1.21292 1.22014 1.17082 1.21929 0.96638 1.00530 0.81610 1.22386 0.91553 0.90364 1.00790 0.92701 0.89063 0.92723 0.89624 0.90144 0.79374 0.82466 0.88591 0.87596 0.94853 0.90289 0.92199 0.95833 0.94226 0.80256 0.93365 0.93501 0.92459 0.81165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 11.01 113.37 1.25 1.37 16 2 O -0.41 -4.32 10.69 -148.98 -1.59 -5.91 16 3 C 0.11 0.74 6.08 71.23 0.43 1.18 16 4 C -0.15 -1.80 5.52 -19.81 -0.11 -1.91 16 5 C 0.14 2.00 10.85 84.71 0.92 2.92 16 6 N -0.51 -10.49 10.35 -194.75 -2.01 -12.50 16 7 C 0.15 3.48 10.76 85.02 0.92 4.39 16 8 C -0.19 -4.22 5.68 -19.99 -0.11 -4.33 16 9 C 0.57 16.42 7.66 86.78 0.66 17.09 16 10 O -0.58 -22.17 16.96 -3.87 -0.07 -22.23 16 11 N -0.60 -14.97 3.31 -815.19 -2.70 -17.67 16 12 C 0.09 1.43 4.46 86.86 0.39 1.82 16 13 C -0.08 -1.45 3.54 -9.40 -0.03 -1.48 16 14 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 15 C -0.15 -2.90 8.16 71.98 0.59 -2.31 16 16 C -0.10 -2.44 2.84 -9.61 -0.03 -2.47 16 17 H 0.10 2.37 8.14 -2.39 -0.02 2.35 16 18 C 0.17 5.88 4.45 86.38 0.38 6.27 16 19 N -0.76 -35.05 5.28 -343.46 -1.81 -36.86 16 20 C -0.23 -13.30 10.47 84.03 0.88 -12.42 16 21 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 22 C -0.06 -3.83 5.50 84.86 0.47 -3.36 16 23 N -0.98 -63.97 13.97 21.65 0.30 -63.67 16 24 Si 0.95 46.37 27.73 68.60 1.90 48.27 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.68 16 27 H -0.25 -10.63 6.52 99.48 0.65 -9.98 16 28 C 0.12 3.47 5.95 86.73 0.52 3.99 16 29 C -0.03 -0.38 7.88 22.73 0.18 -0.20 16 30 H 0.05 0.15 8.14 -2.39 -0.02 0.13 16 31 H 0.09 0.37 8.14 -2.39 -0.02 0.36 16 32 H 0.05 0.13 8.14 -2.38 -0.02 0.11 16 33 H 0.09 0.26 8.09 -2.39 -0.02 0.24 16 34 H 0.08 0.30 8.09 -2.39 -0.02 0.28 16 35 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 36 H 0.16 3.82 7.85 -2.91 -0.02 3.80 16 37 H 0.10 1.26 6.74 -2.39 -0.02 1.24 16 38 H 0.11 0.97 6.84 -2.39 -0.02 0.95 16 39 H 0.03 0.82 7.91 -2.38 -0.02 0.80 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.06 1.32 6.80 -2.39 -0.02 1.31 16 42 H 0.02 0.90 6.80 -2.39 -0.02 0.88 16 43 H 0.04 1.38 8.12 -2.38 -0.02 1.36 16 44 H 0.36 16.14 5.46 -92.71 -0.51 15.64 16 45 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 46 H 0.05 1.72 7.73 -2.39 -0.02 1.70 16 47 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 48 H 0.17 1.72 4.68 -2.91 -0.01 1.71 16 Total: -1.00 -81.24 386.39 1.72 -79.51 By element: Atomic # 1 Polarization: 20.12 SS G_CDS: 0.41 Total: 20.53 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: 7.30 Total: 10.53 kcal Atomic # 7 Polarization: -124.48 SS G_CDS: -6.23 Total: -130.70 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -1.66 Total: -28.15 kcal Atomic # 14 Polarization: 46.37 SS G_CDS: 1.90 Total: 48.27 kcal Total: -81.24 1.72 -79.51 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716985350.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.368 kcal (2) G-P(sol) polarization free energy of solvation -81.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds