Wall clock time and date at job start Tue Mar 31 2020 17:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35912 * 117.00170 * 2 1 4 4 C 1.39136 * 120.47550 * 179.97438 * 3 2 1 5 5 C 1.38529 * 118.37701 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.22319 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.56138 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47341 * 124.99984 * 7 6 5 9 9 O 1.21280 * 120.00105 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00224 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.64580 * 0.02620 * 10 8 7 12 12 C 1.54322 * 107.26731 * 178.90601 * 11 10 8 13 13 H 1.09002 * 110.71554 * 219.25913 * 12 11 10 14 14 C 1.53006 * 110.71873 * 96.16871 * 12 11 10 15 15 C 1.55150 * 102.94381 * 337.80509 * 12 11 10 16 16 H 1.09000 * 111.00185 * 277.42706 * 15 12 11 17 17 C 1.52999 * 111.00310 * 153.57834 * 15 12 11 18 18 N 1.46510 * 109.47093 * 174.99740 * 17 15 12 19 19 C 1.36936 * 120.00047 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99773 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99683 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99637 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47286 * 59.99815 * 23 21 19 25 25 H 1.48504 * 109.47017 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46781 * 299.99687 * 23 21 19 27 27 C 1.47418 * 125.64875 * 179.97438 * 10 8 7 28 28 N 1.31841 * 120.88036 * 0.25647 * 6 5 4 29 29 C 1.31846 * 121.78353 * 359.47764 * 28 6 5 30 30 H 1.08994 * 109.47555 * 300.00364 * 1 2 3 31 31 H 1.09001 * 109.46445 * 60.00529 * 1 2 3 32 32 H 1.09002 * 109.47066 * 179.97438 * 1 2 3 33 33 H 1.08010 * 120.81270 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.39222 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47119 * 4.99562 * 7 6 5 36 36 H 1.08998 * 109.46879 * 245.00063 * 7 6 5 37 37 H 1.08999 * 109.88555 * 59.48317 * 11 10 8 38 38 H 1.09000 * 109.87601 * 298.31901 * 11 10 8 39 39 H 1.08993 * 109.47070 * 61.45361 * 14 12 11 40 40 H 1.08997 * 109.46759 * 181.44891 * 14 12 11 41 41 H 1.09000 * 109.47239 * 301.44824 * 14 12 11 42 42 H 1.08998 * 109.47279 * 294.99632 * 17 15 12 43 43 H 1.09002 * 109.47121 * 55.00082 * 17 15 12 44 44 H 0.97001 * 119.99446 * 0.02562 * 18 17 15 45 45 H 0.97003 * 120.00123 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.36674 * 323.00139 * 27 10 8 47 47 H 1.08998 * 110.36982 * 85.21326 * 27 10 8 48 48 H 1.08004 * 119.66183 * 180.26689 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0182 2.5518 0.0000 6 6 3.2079 3.6721 -0.0016 7 6 3.8344 5.0426 -0.0017 8 6 3.3035 5.8377 -1.1666 9 8 2.4962 5.3402 -1.9227 10 7 3.7265 7.1013 -1.3689 11 6 4.6984 7.8233 -0.5348 12 6 4.8928 9.2196 -1.1626 13 1 5.9387 9.5225 -1.1130 14 6 3.9990 10.2524 -0.4730 15 6 4.4487 9.0042 -2.6335 16 1 5.2579 8.5795 -3.2276 17 6 3.9450 10.3102 -3.2511 18 7 3.6479 10.0969 -4.6698 19 6 3.1794 11.1318 -5.4344 20 1 3.0294 12.1054 -4.9917 21 6 2.8975 10.9294 -6.7784 22 7 3.0799 9.7428 -7.3177 23 14 2.2591 12.3414 -7.8216 24 1 3.2546 13.4433 -7.8258 25 1 2.0383 11.8691 -9.2122 26 1 0.9774 12.8343 -7.2564 27 6 3.2922 7.9879 -2.4636 28 7 1.8945 3.5574 0.0024 29 6 1.3003 2.3805 -0.0021 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0433 0.4029 0.0014 34 1 5.0932 2.6551 0.0008 35 1 4.9167 4.9474 -0.0898 36 1 3.5893 5.5541 0.9291 37 1 5.6473 7.2869 -0.5226 38 1 4.3137 7.9234 0.4801 39 1 4.2707 10.3225 0.5802 40 1 4.1332 11.2240 -0.9482 41 1 2.9564 9.9463 -0.5597 42 1 3.0403 10.6312 -2.7347 43 1 4.7119 11.0785 -3.1521 44 1 3.7823 9.2223 -5.0672 45 1 2.8832 9.6014 -8.2570 46 1 3.1513 7.4166 -3.3812 47 1 2.3701 8.5019 -2.1923 48 1 0.2216 2.3264 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724603296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:23 Heat of formation + Delta-G solvation = -21.688224 kcal Electronic energy + Delta-G solvation = -28100.964381 eV Core-core repulsion = 24156.714748 eV Total energy + Delta-G solvation = -3944.249633 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.98476 -40.02111 -38.61594 -37.63737 -34.62311 -32.93917 -32.64017 -32.39693 -31.12603 -29.29506 -28.30416 -27.44587 -26.49726 -25.23338 -23.69741 -23.18850 -22.27735 -21.63833 -19.22753 -19.15175 -18.43833 -17.52582 -17.10058 -16.68340 -16.34118 -16.17667 -15.90141 -15.19352 -14.90248 -14.63363 -14.46164 -14.35365 -13.97526 -13.66983 -13.47957 -13.26376 -13.12916 -12.83211 -12.70387 -12.43370 -12.39484 -12.22859 -12.21210 -11.99641 -11.74423 -11.63314 -11.51518 -10.99584 -10.80075 -10.52319 -10.36204 -10.30190 -9.99365 -9.95825 -9.71556 -9.64042 -9.49232 -8.83528 -8.59075 -8.43989 -6.88839 -5.72201 -3.01426 0.87072 1.07611 2.81260 2.84685 3.07078 3.46875 3.50931 3.52381 3.60810 4.07591 4.39266 4.40585 4.49402 4.58422 4.62128 4.68339 4.78599 4.82311 4.91088 4.97194 5.04481 5.13327 5.19623 5.23560 5.32657 5.37376 5.48464 5.50205 5.56323 5.63129 5.68977 5.82253 5.83713 5.91912 6.01198 6.10588 6.19644 6.23272 6.26702 6.39245 6.45872 6.53463 6.73056 6.87239 6.88518 7.68663 7.72458 7.83620 8.36320 8.46118 9.57087 10.14838 10.48949 11.50466 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.002277 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.139119 B =12292.897654 C =13673.171516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.314 6.314 3 C 0.071 3.929 4 C -0.109 4.109 5 C -0.125 4.125 6 C 0.107 3.893 7 C -0.082 4.082 8 C 0.530 3.470 9 O -0.521 6.521 10 N -0.621 5.621 11 C 0.104 3.896 12 C -0.097 4.097 13 H 0.088 0.912 14 C -0.144 4.144 15 C -0.102 4.102 16 H 0.084 0.916 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.241 4.241 20 H 0.070 0.930 21 C -0.014 4.014 22 N -0.932 5.932 23 Si 0.907 3.093 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C 0.119 3.881 28 N -0.420 5.420 29 C 0.027 3.973 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.102 0.898 33 H 0.142 0.858 34 H 0.142 0.858 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.058 0.942 42 H 0.025 0.975 43 H 0.023 0.977 44 H 0.384 0.616 45 H 0.256 0.744 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -15.810 22.481 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.226 6.226 3 C 0.024 3.976 4 C -0.135 4.135 5 C -0.145 4.145 6 C -0.032 4.032 7 C -0.122 4.122 8 C 0.317 3.683 9 O -0.396 6.396 10 N -0.356 5.356 11 C -0.019 4.019 12 C -0.116 4.116 13 H 0.107 0.893 14 C -0.202 4.202 15 C -0.121 4.121 16 H 0.103 0.897 17 C 0.038 3.962 18 N -0.378 5.378 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.738 3.262 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.003 4.003 28 N -0.129 5.129 29 C -0.132 4.132 30 H 0.076 0.924 31 H 0.078 0.922 32 H 0.121 0.879 33 H 0.160 0.840 34 H 0.160 0.840 35 H 0.125 0.875 36 H 0.126 0.874 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.077 0.923 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.217 0.783 45 H 0.066 0.934 46 H 0.099 0.901 47 H 0.087 0.913 48 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 2.086 -15.474 22.028 27.001 hybrid contribution -0.033 -0.172 -0.813 0.831 sum 2.053 -15.645 21.216 26.440 Atomic orbital electron populations 1.23130 0.77912 1.04311 1.01801 1.86056 1.21745 1.26138 1.88659 1.20100 0.93320 0.85756 0.98472 1.20848 0.91657 0.98707 1.02299 1.21784 1.01253 0.91629 0.99842 1.20464 0.89306 0.94292 0.99113 1.20504 1.00945 0.91671 0.99110 1.19863 0.81826 0.80295 0.86285 1.90760 1.32985 1.68969 1.46862 1.48556 1.44240 1.12801 1.30003 1.22149 0.92268 0.92950 0.94539 1.22184 1.00700 0.93537 0.95228 0.89342 1.21842 0.99857 0.99145 0.99309 1.22610 0.97675 0.97096 0.94729 0.89734 1.20635 0.96857 0.92412 0.86333 1.42385 1.79267 1.11945 1.04163 1.19156 1.35804 0.91045 0.91176 0.91242 1.24750 1.02397 0.96773 0.97047 1.69652 1.54776 1.21011 1.12625 0.86271 0.78748 0.81513 0.79659 1.21305 1.21717 1.21275 1.22280 0.97191 0.90806 0.90026 1.67291 1.11458 1.26317 1.07786 1.22886 1.00523 0.86914 1.02902 0.92376 0.92190 0.87919 0.83978 0.83995 0.87517 0.87372 0.91591 0.91476 0.92930 0.91488 0.92311 0.95733 0.95925 0.78269 0.93447 0.90109 0.91297 0.82597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.82 101.05 0.99 1.13 16 2 O -0.31 -3.02 10.51 -19.46 -0.20 -3.23 16 3 C 0.07 0.77 6.71 -39.08 -0.26 0.51 16 4 C -0.11 -1.06 10.13 -39.14 -0.40 -1.45 16 5 C -0.13 -1.21 9.70 -39.46 -0.38 -1.59 16 6 C 0.11 1.31 5.76 -82.58 -0.48 0.83 16 7 C -0.08 -0.86 5.29 -29.04 -0.15 -1.01 16 8 C 0.53 8.07 7.78 -10.98 -0.09 7.99 16 9 O -0.52 -10.48 15.60 5.56 0.09 -10.39 16 10 N -0.62 -8.77 3.33 -170.53 -0.57 -9.34 16 11 C 0.10 1.06 6.07 -3.06 -0.02 1.04 16 12 C -0.10 -1.10 3.47 -88.79 -0.31 -1.41 16 13 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 14 C -0.14 -1.58 7.91 37.16 0.29 -1.28 16 15 C -0.10 -1.59 2.91 -88.48 -0.26 -1.85 16 16 H 0.08 1.39 8.14 -51.93 -0.42 0.97 16 17 C 0.17 3.21 4.54 -4.04 -0.02 3.20 16 18 N -0.73 -18.63 5.55 -59.90 -0.33 -18.96 16 19 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 20 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.81 13.06 55.49 0.72 -28.08 16 23 Si 0.91 22.74 29.55 -169.99 -5.02 17.72 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.37 7.11 56.52 0.40 -6.96 16 26 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 27 C 0.12 2.02 6.00 -2.54 -0.02 2.00 16 28 N -0.42 -5.98 9.23 -9.35 -0.09 -6.06 16 29 C 0.03 0.32 10.22 -17.37 -0.18 0.14 16 30 H 0.06 0.29 7.68 -51.93 -0.40 -0.11 16 31 H 0.06 0.36 7.68 -51.93 -0.40 -0.04 16 32 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 33 H 0.14 1.05 8.06 -52.48 -0.42 0.62 16 34 H 0.14 0.90 7.95 -52.49 -0.42 0.48 16 35 H 0.11 0.76 7.87 -51.93 -0.41 0.36 16 36 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 37 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 38 H 0.07 0.56 7.84 -51.93 -0.41 0.16 16 39 H 0.05 0.46 8.14 -51.93 -0.42 0.03 16 40 H 0.07 0.78 7.12 -51.93 -0.37 0.41 16 41 H 0.06 0.72 7.35 -51.93 -0.38 0.34 16 42 H 0.02 0.48 6.94 -51.93 -0.36 0.12 16 43 H 0.02 0.44 8.05 -51.93 -0.42 0.02 16 44 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 45 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 46 H 0.08 1.63 8.04 -51.93 -0.42 1.21 16 47 H 0.07 1.24 7.49 -51.93 -0.39 0.85 16 48 H 0.16 1.51 6.32 -52.48 -0.33 1.18 16 LS Contribution 390.97 15.07 5.89 5.89 Total: -1.00 -36.84 390.97 -8.54 -45.37 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -7.52 Total: 6.27 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -1.51 Total: 0.81 kcal Atomic # 7 Polarization: -62.18 SS G_CDS: -0.26 Total: -62.44 kcal Atomic # 8 Polarization: -13.50 SS G_CDS: -0.12 Total: -13.62 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -5.02 Total: 17.72 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.84 -8.54 -45.37 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724603296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.686 kcal (2) G-P(sol) polarization free energy of solvation -36.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds