Wall clock time and date at job start Tue Mar 31 2020 17:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35912 * 117.00170 * 2 1 4 4 C 1.39136 * 120.47550 * 179.97438 * 3 2 1 5 5 C 1.38529 * 118.37701 * 179.97438 * 4 3 2 6 6 C 1.38264 * 119.22319 * 359.97438 * 5 4 3 7 7 C 1.50692 * 119.56138 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47341 * 124.99984 * 7 6 5 9 9 O 1.21280 * 120.00105 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00224 * 180.02562 * 8 7 6 11 11 C 1.47026 * 125.64580 * 0.02620 * 10 8 7 12 12 C 1.54322 * 107.26731 * 178.90601 * 11 10 8 13 13 H 1.09002 * 110.71554 * 219.25913 * 12 11 10 14 14 C 1.53006 * 110.71873 * 96.16871 * 12 11 10 15 15 C 1.55150 * 102.94381 * 337.80509 * 12 11 10 16 16 H 1.09000 * 111.00185 * 277.42706 * 15 12 11 17 17 C 1.52999 * 111.00310 * 153.57834 * 15 12 11 18 18 N 1.46510 * 109.47093 * 174.99740 * 17 15 12 19 19 C 1.36936 * 120.00047 * 179.97438 * 18 17 15 20 20 H 1.08000 * 119.99773 * 0.02562 * 19 18 17 21 21 C 1.38809 * 119.99683 * 180.02562 * 19 18 17 22 22 N 1.31615 * 120.00166 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99637 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47286 * 59.99815 * 23 21 19 25 25 H 1.48504 * 109.47017 * 179.97438 * 23 21 19 26 26 H 1.48498 * 109.46781 * 299.99687 * 23 21 19 27 27 C 1.47418 * 125.64875 * 179.97438 * 10 8 7 28 28 N 1.31841 * 120.88036 * 0.25647 * 6 5 4 29 29 C 1.31846 * 121.78353 * 359.47764 * 28 6 5 30 30 H 1.08994 * 109.47555 * 300.00364 * 1 2 3 31 31 H 1.09001 * 109.46445 * 60.00529 * 1 2 3 32 32 H 1.09002 * 109.47066 * 179.97438 * 1 2 3 33 33 H 1.08010 * 120.81270 * 359.97438 * 4 3 2 34 34 H 1.07998 * 120.39222 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.47119 * 4.99562 * 7 6 5 36 36 H 1.08998 * 109.46879 * 245.00063 * 7 6 5 37 37 H 1.08999 * 109.88555 * 59.48317 * 11 10 8 38 38 H 1.09000 * 109.87601 * 298.31901 * 11 10 8 39 39 H 1.08993 * 109.47070 * 61.45361 * 14 12 11 40 40 H 1.08997 * 109.46759 * 181.44891 * 14 12 11 41 41 H 1.09000 * 109.47239 * 301.44824 * 14 12 11 42 42 H 1.08998 * 109.47279 * 294.99632 * 17 15 12 43 43 H 1.09002 * 109.47121 * 55.00082 * 17 15 12 44 44 H 0.97001 * 119.99446 * 0.02562 * 18 17 15 45 45 H 0.97003 * 120.00123 * 180.02562 * 22 21 19 46 46 H 1.09004 * 110.36674 * 323.00139 * 27 10 8 47 47 H 1.08998 * 110.36982 * 85.21326 * 27 10 8 48 48 H 1.08004 * 119.66183 * 180.26689 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 3.4348 1.2953 0.0005 5 6 4.0182 2.5518 0.0000 6 6 3.2079 3.6721 -0.0016 7 6 3.8344 5.0426 -0.0017 8 6 3.3035 5.8377 -1.1666 9 8 2.4962 5.3402 -1.9227 10 7 3.7265 7.1013 -1.3689 11 6 4.6984 7.8233 -0.5348 12 6 4.8928 9.2196 -1.1626 13 1 5.9387 9.5225 -1.1130 14 6 3.9990 10.2524 -0.4730 15 6 4.4487 9.0042 -2.6335 16 1 5.2579 8.5795 -3.2276 17 6 3.9450 10.3102 -3.2511 18 7 3.6479 10.0969 -4.6698 19 6 3.1794 11.1318 -5.4344 20 1 3.0294 12.1054 -4.9917 21 6 2.8975 10.9294 -6.7784 22 7 3.0799 9.7428 -7.3177 23 14 2.2591 12.3414 -7.8216 24 1 3.2546 13.4433 -7.8258 25 1 2.0383 11.8691 -9.2122 26 1 0.9774 12.8343 -7.2564 27 6 3.2922 7.9879 -2.4636 28 7 1.8945 3.5574 0.0024 29 6 1.3003 2.3805 -0.0021 30 1 -0.3634 0.5138 0.8899 31 1 -0.3632 0.5138 -0.8901 32 1 -0.3633 -1.0277 -0.0005 33 1 4.0433 0.4029 0.0014 34 1 5.0932 2.6551 0.0008 35 1 4.9167 4.9474 -0.0898 36 1 3.5893 5.5541 0.9291 37 1 5.6473 7.2869 -0.5226 38 1 4.3137 7.9234 0.4801 39 1 4.2707 10.3225 0.5802 40 1 4.1332 11.2240 -0.9482 41 1 2.9564 9.9463 -0.5597 42 1 3.0403 10.6312 -2.7347 43 1 4.7119 11.0785 -3.1521 44 1 3.7823 9.2223 -5.0672 45 1 2.8832 9.6014 -8.2570 46 1 3.1513 7.4166 -3.3812 47 1 2.3701 8.5019 -2.1923 48 1 0.2216 2.3264 -0.0029 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724603296.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:22 Heat of formation + Delta-G solvation = -48.122766 kcal Electronic energy + Delta-G solvation = -28102.110669 eV Core-core repulsion = 24156.714748 eV Total energy + Delta-G solvation = -3945.395921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.79966 -41.09711 -39.49129 -38.72686 -36.42915 -34.30565 -33.40810 -33.34422 -32.78881 -30.65133 -29.19638 -28.23012 -27.41342 -26.83902 -24.98168 -24.33517 -23.35158 -22.81866 -20.48287 -20.27529 -19.16774 -19.01744 -18.33546 -17.80265 -17.38690 -16.97481 -16.80836 -16.63077 -16.18878 -15.82319 -15.39447 -15.33235 -15.11287 -15.06597 -14.77255 -14.40914 -14.12749 -14.00754 -13.93657 -13.64533 -13.34089 -13.17299 -13.01176 -12.97415 -12.94068 -12.77981 -12.72194 -12.58968 -12.32887 -12.21250 -11.88729 -11.60914 -11.48952 -11.40903 -10.93941 -10.88974 -10.66697 -10.35068 -9.60583 -9.36968 -9.00049 -7.95182 -5.24475 0.09413 0.30281 1.45454 1.49455 1.55431 1.70197 2.00031 2.22200 2.55532 2.78306 3.29223 3.37344 3.45551 3.60571 3.64466 3.71469 3.86135 3.90266 4.05221 4.18343 4.28784 4.30339 4.32395 4.36997 4.37939 4.50458 4.55785 4.58267 4.62123 4.65990 4.71010 4.76162 4.83313 4.88411 4.95253 4.99748 5.05806 5.09682 5.18276 5.27359 5.33930 5.35648 5.49314 5.51540 5.55774 6.18887 6.26485 6.61102 7.03342 7.23809 7.32097 8.09288 8.30702 9.28460 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.014541 B = 0.002277 C = 0.002047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.139119 B =12292.897654 C =13673.171516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.324 6.324 3 C 0.066 3.934 4 C -0.116 4.116 5 C -0.116 4.116 6 C 0.080 3.920 7 C -0.069 4.069 8 C 0.520 3.480 9 O -0.584 6.584 10 N -0.619 5.619 11 C 0.101 3.899 12 C -0.086 4.086 13 H 0.118 0.882 14 C -0.144 4.144 15 C -0.094 4.094 16 H 0.076 0.924 17 C 0.166 3.834 18 N -0.749 5.749 19 C -0.244 4.244 20 H 0.079 0.921 21 C -0.081 4.081 22 N -0.973 5.973 23 Si 0.976 3.024 24 H -0.273 1.273 25 H -0.297 1.297 26 H -0.279 1.279 27 C 0.124 3.876 28 N -0.462 5.462 29 C 0.004 3.996 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.181 0.819 35 H 0.150 0.850 36 H 0.132 0.868 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.085 0.915 40 H 0.057 0.943 41 H 0.037 0.963 42 H 0.024 0.976 43 H 0.034 0.966 44 H 0.370 0.630 45 H 0.250 0.750 46 H 0.034 0.966 47 H 0.050 0.950 48 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.336 -15.539 25.276 30.146 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.018 3.982 4 C -0.142 4.142 5 C -0.136 4.136 6 C -0.059 4.059 7 C -0.109 4.109 8 C 0.310 3.690 9 O -0.464 6.464 10 N -0.353 5.353 11 C -0.020 4.020 12 C -0.105 4.105 13 H 0.136 0.864 14 C -0.201 4.201 15 C -0.113 4.113 16 H 0.095 0.905 17 C 0.039 3.961 18 N -0.391 5.391 19 C -0.375 4.375 20 H 0.097 0.903 21 C -0.273 4.273 22 N -0.624 5.624 23 Si 0.804 3.196 24 H -0.199 1.199 25 H -0.224 1.224 26 H -0.205 1.205 27 C 0.001 3.999 28 N -0.171 5.171 29 C -0.155 4.155 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.145 0.855 33 H 0.185 0.815 34 H 0.199 0.801 35 H 0.168 0.832 36 H 0.150 0.850 37 H 0.120 0.880 38 H 0.115 0.885 39 H 0.104 0.896 40 H 0.076 0.924 41 H 0.057 0.943 42 H 0.042 0.958 43 H 0.052 0.948 44 H 0.202 0.798 45 H 0.059 0.941 46 H 0.052 0.948 47 H 0.068 0.932 48 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 4.387 -15.162 24.905 29.485 hybrid contribution -0.780 -0.278 -1.621 1.820 sum 3.607 -15.440 23.284 28.170 Atomic orbital electron populations 1.23382 0.76345 1.06006 1.02139 1.86042 1.23454 1.25625 1.88472 1.20267 0.94080 0.85745 0.98097 1.21278 0.91471 0.99921 1.01534 1.22180 1.02931 0.90613 0.97842 1.20916 0.89123 0.95932 0.99926 1.20607 1.02884 0.90105 0.97302 1.20873 0.80879 0.80383 0.86844 1.90732 1.35898 1.70369 1.49390 1.48649 1.44618 1.12578 1.29419 1.22496 0.92890 0.91794 0.94827 1.22236 1.02213 0.94770 0.91261 0.86404 1.21850 0.98622 0.98348 1.01284 1.22438 0.96542 0.94512 0.97840 0.90522 1.20799 0.97037 0.94841 0.83383 1.42663 1.79204 1.10791 1.06475 1.19628 1.34329 0.91927 0.91661 0.90302 1.25636 1.03694 0.99332 0.98593 1.69835 1.56796 1.23262 1.12487 0.85179 0.78470 0.78616 0.77313 1.19902 1.22378 1.20471 1.21940 0.97416 0.91093 0.89469 1.67236 1.13151 1.27540 1.09196 1.23053 1.01194 0.87171 1.04045 0.91425 0.92530 0.85524 0.81542 0.80142 0.83240 0.85008 0.88037 0.88454 0.89595 0.92436 0.94348 0.95775 0.94815 0.79849 0.94121 0.94764 0.93185 0.81999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.82 113.37 1.11 1.30 16 2 O -0.32 -6.08 10.51 -92.56 -0.97 -7.06 16 3 C 0.07 1.41 6.71 22.60 0.15 1.56 16 4 C -0.12 -2.06 10.13 22.56 0.23 -1.83 16 5 C -0.12 -1.95 9.70 22.35 0.22 -1.73 16 6 C 0.08 1.85 5.76 42.56 0.24 2.09 16 7 C -0.07 -1.26 5.29 29.10 0.15 -1.10 16 8 C 0.52 15.67 7.78 87.66 0.68 16.35 16 9 O -0.58 -24.79 15.60 -3.03 -0.05 -24.84 16 10 N -0.62 -16.92 3.33 -811.81 -2.70 -19.62 16 11 C 0.10 1.63 6.07 86.73 0.53 2.16 16 12 C -0.09 -1.66 3.47 -9.61 -0.03 -1.69 16 13 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 14 C -0.14 -2.74 7.91 71.98 0.57 -2.17 16 15 C -0.09 -2.91 2.91 -9.41 -0.03 -2.94 16 16 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 17 C 0.17 6.47 4.54 86.38 0.39 6.87 16 18 N -0.75 -39.20 5.55 -343.44 -1.91 -41.11 16 19 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.08 -4.80 5.50 84.86 0.47 -4.33 16 22 N -0.97 -62.22 13.06 21.65 0.28 -61.94 16 23 Si 0.98 47.45 29.55 68.60 2.03 49.48 16 24 H -0.27 -12.58 7.11 99.48 0.71 -11.88 16 25 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 27 C 0.12 4.43 6.00 86.85 0.52 4.95 16 28 N -0.46 -13.43 9.23 -183.49 -1.69 -15.12 16 29 C 0.00 0.09 10.22 84.80 0.87 0.96 16 30 H 0.07 0.66 7.68 -2.39 -0.02 0.65 16 31 H 0.06 0.70 7.68 -2.39 -0.02 0.69 16 32 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 33 H 0.17 2.02 8.06 -2.91 -0.02 2.00 16 34 H 0.18 1.46 7.95 -2.91 -0.02 1.44 16 35 H 0.15 1.36 7.87 -2.39 -0.02 1.34 16 36 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 38 H 0.10 1.09 7.84 -2.39 -0.02 1.07 16 39 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.06 1.21 7.12 -2.39 -0.02 1.19 16 41 H 0.04 0.89 7.35 -2.39 -0.02 0.87 16 42 H 0.02 0.96 6.94 -2.39 -0.02 0.94 16 43 H 0.03 1.27 8.05 -2.39 -0.02 1.25 16 44 H 0.37 21.08 7.67 -92.71 -0.71 20.37 16 45 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 46 H 0.03 1.51 8.04 -2.38 -0.02 1.49 16 47 H 0.05 1.93 7.49 -2.39 -0.02 1.91 16 48 H 0.16 3.42 6.32 -2.91 -0.02 3.40 16 Total: -1.00 -86.76 390.97 2.16 -84.61 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.25 Total: 28.27 kcal Atomic # 6 Polarization: 0.40 SS G_CDS: 6.91 Total: 7.31 kcal Atomic # 7 Polarization: -131.77 SS G_CDS: -6.02 Total: -137.79 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -1.02 Total: -31.89 kcal Atomic # 14 Polarization: 47.45 SS G_CDS: 2.03 Total: 49.48 kcal Total: -86.76 2.16 -84.61 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724603296.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.485 kcal (2) G-P(sol) polarization free energy of solvation -86.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.608 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds