Wall clock time and date at job start Tue Mar 31 2020 17:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.88564 * 2 1 4 4 C 1.55131 * 111.19439 * 236.06223 * 2 1 3 5 5 N 1.47422 * 104.72458 * 279.19562 * 4 2 1 6 6 C 1.34772 * 125.64543 * 155.81360 * 5 4 2 7 7 O 1.21284 * 119.99801 * 179.69223 * 6 5 4 8 8 C 1.50704 * 120.00297 * 359.69153 * 6 5 4 9 9 C 1.52999 * 109.47181 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47177 * 180.02562 * 9 8 6 11 11 C 1.38830 * 120.34988 * 269.97740 * 10 9 8 12 12 C 1.38381 * 118.48403 * 180.02562 * 11 10 9 13 13 C 1.38925 * 119.10900 * 0.02562 * 12 11 10 14 14 O 1.35677 * 119.68043 * 180.02562 * 13 12 11 15 15 N 1.32247 * 120.62932 * 0.02562 * 13 12 11 16 16 C 1.31964 * 121.65048 * 359.97438 * 15 13 12 17 17 C 1.47021 * 108.70147 * 335.55062 * 5 4 2 18 18 C 1.54322 * 107.27086 * 1.28778 * 17 5 4 19 19 H 1.08999 * 110.71971 * 263.64716 * 18 17 5 20 20 C 1.53005 * 110.71749 * 140.55893 * 18 17 5 21 21 N 1.46499 * 109.47359 * 66.44878 * 20 18 17 22 22 C 1.36934 * 120.00417 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99650 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00429 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00052 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00231 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47181 * 89.99632 * 26 24 22 28 28 H 1.48492 * 109.47009 * 210.00038 * 26 24 22 29 29 H 1.48502 * 109.46680 * 329.99713 * 26 24 22 30 30 H 1.08998 * 109.46908 * 296.12320 * 1 2 3 31 31 H 1.08999 * 109.47017 * 56.11644 * 1 2 3 32 32 H 1.08997 * 109.47245 * 176.12048 * 1 2 3 33 33 H 1.08994 * 110.50019 * 160.34614 * 4 2 1 34 34 H 1.09012 * 110.33794 * 37.95780 * 4 2 1 35 35 H 1.09005 * 109.46628 * 60.00137 * 8 6 5 36 36 H 1.08998 * 109.47307 * 300.00075 * 8 6 5 37 37 H 1.08997 * 109.47262 * 60.00299 * 9 8 6 38 38 H 1.09006 * 109.47020 * 300.00013 * 9 8 6 39 39 H 1.08004 * 120.75912 * 0.02562 * 11 10 9 40 40 H 1.08001 * 120.44565 * 179.97438 * 12 11 10 41 41 H 0.96699 * 114.00260 * 269.97540 * 14 13 12 42 42 H 1.08004 * 119.58141 * 180.02562 * 16 15 13 43 43 H 1.09007 * 109.88077 * 120.70633 * 17 5 4 44 44 H 1.09006 * 109.87945 * 241.71119 * 17 5 4 45 45 H 1.08994 * 109.47023 * 186.45368 * 20 18 17 46 46 H 1.09002 * 109.47068 * 306.45302 * 20 18 17 47 47 H 0.97004 * 119.99819 * 0.02562 * 21 20 18 48 48 H 0.96996 * 120.00201 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0909 -0.8075 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9471 -3.2835 -1.5927 7 8 1.8925 -4.4026 -1.1284 8 6 1.9401 -3.0863 -3.0867 9 6 1.8597 -4.4476 -3.7804 10 6 1.8534 -4.2505 -5.2745 11 6 0.6542 -4.0954 -5.9566 12 6 0.6933 -3.9174 -7.3283 13 6 1.9239 -3.9006 -7.9728 14 8 1.9759 -3.7264 -9.3173 15 7 3.0451 -4.0529 -7.2882 16 6 3.0397 -4.2244 -5.9798 17 6 2.0285 -2.2644 0.6970 18 6 2.0861 -0.8074 1.2025 19 1 3.1129 -0.5165 1.4242 20 6 1.1965 -0.6263 2.4341 21 7 1.7452 -1.3993 3.5510 22 6 1.1136 -1.3901 4.7659 23 1 0.2106 -0.8131 4.9006 24 6 1.6339 -2.1221 5.8243 25 7 2.7346 -2.8248 5.6603 26 14 0.7718 -2.1100 7.4815 27 1 -0.2211 -3.2131 7.5310 28 1 1.7733 -2.2965 8.5618 29 1 0.0777 -0.8105 7.6688 30 1 -0.3633 0.4525 0.9227 31 1 -0.3633 0.5729 -0.8531 32 1 -0.3633 -1.0253 -0.0695 33 1 3.1253 -0.5273 -1.3986 34 1 1.4764 -0.6458 -2.0858 35 1 2.8552 -2.5778 -3.3903 36 1 1.0779 -2.4825 -3.3696 37 1 0.9449 -4.9566 -3.4769 38 1 2.7222 -5.0511 -3.4976 39 1 -0.2879 -4.1132 -5.4286 40 1 -0.2205 -3.7941 -7.8905 41 1 1.9429 -4.5504 -9.8223 42 1 3.9754 -4.3450 -5.4539 43 1 1.1217 -2.7475 1.0611 44 1 2.9048 -2.8137 1.0412 45 1 1.1615 0.4289 2.7050 46 1 0.1893 -0.9773 2.2095 47 1 2.5565 -1.9172 3.4301 48 1 3.0983 -3.3360 6.4000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733554789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:00 Heat of formation + Delta-G solvation = -36.336992 kcal Electronic energy + Delta-G solvation = -27804.800988 eV Core-core repulsion = 23859.916137 eV Total energy + Delta-G solvation = -3944.884851 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.92969 -40.19312 -38.21660 -37.58167 -34.68328 -34.42333 -32.80674 -32.47845 -31.16071 -30.02999 -28.80681 -26.81174 -25.89390 -24.54754 -24.13742 -23.11060 -21.96874 -21.56028 -19.24752 -19.20711 -19.13837 -17.43800 -17.35939 -16.84881 -16.49271 -16.24958 -15.61583 -15.27629 -15.04444 -14.75586 -14.56547 -14.05615 -13.76049 -13.65530 -13.55366 -13.35693 -13.17867 -13.05714 -12.62934 -12.43075 -12.32516 -12.21537 -12.16358 -11.92393 -11.85248 -11.56839 -11.36461 -11.04017 -10.84536 -10.56330 -10.47105 -10.32697 -10.29712 -9.98831 -9.86918 -9.76434 -9.67464 -9.15318 -8.87329 -8.53133 -6.92383 -5.75765 -3.04978 0.53880 0.79329 2.66319 2.97127 3.08070 3.40800 3.44305 3.49044 3.50921 4.17062 4.27521 4.46649 4.49361 4.51300 4.55803 4.61732 4.74302 4.80369 4.88154 4.95320 5.05297 5.18860 5.24565 5.31844 5.41180 5.44640 5.50047 5.52713 5.55109 5.59988 5.76835 5.80046 5.83093 5.91513 5.98444 6.04200 6.10623 6.16502 6.25666 6.35636 6.39131 6.45284 6.67908 6.82597 7.03812 7.49846 7.58713 7.69921 8.20518 8.42593 9.53826 10.10877 10.45064 11.46949 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.001904 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.517002 B =14700.214762 C =15187.710423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.098 4.098 3 H 0.090 0.910 4 C 0.102 3.898 5 N -0.616 5.616 6 C 0.523 3.477 7 O -0.539 6.539 8 C -0.130 4.130 9 C -0.061 4.061 10 C -0.140 4.140 11 C -0.057 4.057 12 C -0.183 4.183 13 C 0.301 3.699 14 O -0.484 6.484 15 N -0.502 5.502 16 C 0.128 3.872 17 C 0.117 3.883 18 C -0.101 4.101 19 H 0.085 0.915 20 C 0.163 3.837 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.291 1.291 29 H -0.282 1.282 30 H 0.068 0.932 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.092 0.908 37 H 0.085 0.915 38 H 0.087 0.913 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.400 0.600 42 H 0.162 0.838 43 H 0.075 0.925 44 H 0.069 0.931 45 H 0.023 0.977 46 H 0.026 0.974 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.106 1.403 -28.290 28.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 H 0.108 0.892 4 C -0.021 4.021 5 N -0.350 5.350 6 C 0.311 3.689 7 O -0.416 6.416 8 C -0.170 4.170 9 C -0.100 4.100 10 C -0.142 4.142 11 C -0.082 4.082 12 C -0.204 4.204 13 C 0.122 3.878 14 O -0.291 6.291 15 N -0.220 5.220 16 C -0.029 4.029 17 C -0.004 4.004 18 C -0.121 4.121 19 H 0.103 0.897 20 C 0.035 3.965 21 N -0.378 5.378 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.087 0.913 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.159 0.841 40 H 0.158 0.842 41 H 0.257 0.743 42 H 0.179 0.821 43 H 0.093 0.907 44 H 0.087 0.913 45 H 0.040 0.960 46 H 0.043 0.957 47 H 0.217 0.783 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.464 1.380 -28.328 28.468 hybrid contribution -0.904 -0.557 1.133 1.553 sum -3.367 0.823 -27.194 27.414 Atomic orbital electron populations 1.21777 0.94102 1.02133 1.02008 1.22369 0.96613 0.98967 0.93806 0.89170 1.22474 1.00745 0.80969 0.97904 1.48590 1.72556 1.06127 1.07716 1.20221 0.76633 0.83611 0.88406 1.90744 1.49980 1.23245 1.77669 1.21631 1.04536 0.99114 0.91708 1.20275 1.05308 0.96468 0.87903 1.20976 0.94094 1.01561 0.97529 1.21498 0.98688 0.94695 0.93348 1.22126 0.98592 1.03907 0.95735 1.19214 0.88059 0.95486 0.85005 1.84788 1.95847 1.35339 1.13142 1.67188 1.31729 1.13302 1.09773 1.22500 0.98058 0.94295 0.88065 1.22018 1.03091 0.97511 0.77815 1.22486 1.01100 0.93288 0.95200 0.89702 1.20714 0.94604 0.95164 0.85981 1.42376 1.31040 1.56767 1.07579 1.19196 1.06135 1.23986 0.87884 0.91208 1.24745 0.97805 1.00079 0.98294 1.69654 1.22091 1.34668 1.31600 0.86194 0.78442 0.77575 0.83993 1.21727 1.21779 1.20788 0.91302 0.93025 0.92468 0.91249 0.90800 0.88849 0.88950 0.89613 0.89445 0.84115 0.84161 0.74299 0.82123 0.90668 0.91266 0.95957 0.95654 0.78273 0.93486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 8.15 37.16 0.30 -1.26 16 2 C -0.10 -1.07 3.54 -88.35 -0.31 -1.39 16 3 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 4 C 0.10 0.99 6.17 -2.41 -0.01 0.97 16 5 N -0.62 -8.08 3.31 -170.38 -0.56 -8.64 16 6 C 0.52 6.97 7.85 -10.99 -0.09 6.89 16 7 O -0.54 -9.53 16.31 5.55 0.09 -9.44 16 8 C -0.13 -1.11 4.68 -27.88 -0.13 -1.24 16 9 C -0.06 -0.51 4.66 -27.88 -0.13 -0.64 16 10 C -0.14 -1.06 5.15 -104.47 -0.54 -1.60 16 11 C -0.06 -0.38 9.85 -39.31 -0.39 -0.77 16 12 C -0.18 -1.27 10.04 -39.27 -0.39 -1.67 16 13 C 0.30 2.66 7.75 -17.12 -0.13 2.53 16 14 O -0.48 -3.68 13.56 -18.73 -0.25 -3.93 16 15 N -0.50 -5.10 10.39 -13.33 -0.14 -5.24 16 16 C 0.13 1.07 10.85 -17.57 -0.19 0.88 16 17 C 0.12 1.92 5.83 -3.07 -0.02 1.90 16 18 C -0.10 -1.52 2.87 -88.78 -0.26 -1.78 16 19 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 20 C 0.16 3.10 4.52 -4.04 -0.02 3.09 16 21 N -0.73 -18.25 5.45 -59.91 -0.33 -18.58 16 22 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 23 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 24 C -0.01 -0.38 5.50 -17.44 -0.10 -0.47 16 25 N -0.93 -28.32 13.06 55.49 0.72 -27.60 16 26 Si 0.91 22.49 29.55 -169.99 -5.02 17.46 16 27 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 28 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 29 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 30 H 0.07 0.81 6.76 -51.93 -0.35 0.46 16 31 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.71 7.91 -51.93 -0.41 0.30 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.56 7.40 -51.92 -0.38 0.17 16 35 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 0.65 7.85 -51.93 -0.41 0.24 16 37 H 0.09 0.76 8.05 -51.93 -0.42 0.34 16 38 H 0.09 0.77 8.05 -51.93 -0.42 0.36 16 39 H 0.14 0.68 8.06 -52.48 -0.42 0.26 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.40 1.02 9.06 45.56 0.41 1.43 16 42 H 0.16 1.06 8.06 -52.48 -0.42 0.64 16 43 H 0.07 1.42 7.77 -51.93 -0.40 1.02 16 44 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 46 H 0.03 0.49 6.67 -51.93 -0.35 0.15 16 47 H 0.38 10.11 7.52 -40.82 -0.31 9.80 16 48 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 394.69 15.07 5.95 5.95 Total: -1.00 -35.91 394.69 -8.90 -44.81 By element: Atomic # 1 Polarization: 13.42 SS G_CDS: -6.81 Total: 6.61 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: -2.55 Total: -1.40 kcal Atomic # 7 Polarization: -59.76 SS G_CDS: -0.30 Total: -60.06 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.16 Total: -13.37 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.46 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.91 -8.90 -44.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733554789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.472 kcal (2) G-P(sol) polarization free energy of solvation -35.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds