Wall clock time and date at job start Tue Mar 31 2020 17:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 110.88564 * 2 1 4 4 C 1.55131 * 111.19439 * 236.06223 * 2 1 3 5 5 N 1.47422 * 104.72458 * 279.19562 * 4 2 1 6 6 C 1.34772 * 125.64543 * 155.81360 * 5 4 2 7 7 O 1.21284 * 119.99801 * 179.69223 * 6 5 4 8 8 C 1.50704 * 120.00297 * 359.69153 * 6 5 4 9 9 C 1.52999 * 109.47181 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.47177 * 180.02562 * 9 8 6 11 11 C 1.38830 * 120.34988 * 269.97740 * 10 9 8 12 12 C 1.38381 * 118.48403 * 180.02562 * 11 10 9 13 13 C 1.38925 * 119.10900 * 0.02562 * 12 11 10 14 14 O 1.35677 * 119.68043 * 180.02562 * 13 12 11 15 15 N 1.32247 * 120.62932 * 0.02562 * 13 12 11 16 16 C 1.31964 * 121.65048 * 359.97438 * 15 13 12 17 17 C 1.47021 * 108.70147 * 335.55062 * 5 4 2 18 18 C 1.54322 * 107.27086 * 1.28778 * 17 5 4 19 19 H 1.08999 * 110.71971 * 263.64716 * 18 17 5 20 20 C 1.53005 * 110.71749 * 140.55893 * 18 17 5 21 21 N 1.46499 * 109.47359 * 66.44878 * 20 18 17 22 22 C 1.36934 * 120.00417 * 179.97438 * 21 20 18 23 23 H 1.08002 * 119.99650 * 0.02562 * 22 21 20 24 24 C 1.38805 * 120.00429 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00052 * 0.02562 * 24 22 21 26 26 Si 1.86804 * 120.00231 * 180.02562 * 24 22 21 27 27 H 1.48494 * 109.47181 * 89.99632 * 26 24 22 28 28 H 1.48492 * 109.47009 * 210.00038 * 26 24 22 29 29 H 1.48502 * 109.46680 * 329.99713 * 26 24 22 30 30 H 1.08998 * 109.46908 * 296.12320 * 1 2 3 31 31 H 1.08999 * 109.47017 * 56.11644 * 1 2 3 32 32 H 1.08997 * 109.47245 * 176.12048 * 1 2 3 33 33 H 1.08994 * 110.50019 * 160.34614 * 4 2 1 34 34 H 1.09012 * 110.33794 * 37.95780 * 4 2 1 35 35 H 1.09005 * 109.46628 * 60.00137 * 8 6 5 36 36 H 1.08998 * 109.47307 * 300.00075 * 8 6 5 37 37 H 1.08997 * 109.47262 * 60.00299 * 9 8 6 38 38 H 1.09006 * 109.47020 * 300.00013 * 9 8 6 39 39 H 1.08004 * 120.75912 * 0.02562 * 11 10 9 40 40 H 1.08001 * 120.44565 * 179.97438 * 12 11 10 41 41 H 0.96699 * 114.00260 * 269.97540 * 14 13 12 42 42 H 1.08004 * 119.58141 * 180.02562 * 16 15 13 43 43 H 1.09007 * 109.88077 * 120.70633 * 17 5 4 44 44 H 1.09006 * 109.87945 * 241.71119 * 17 5 4 45 45 H 1.08994 * 109.47023 * 186.45368 * 20 18 17 46 46 H 1.09002 * 109.47068 * 306.45302 * 20 18 17 47 47 H 0.97004 * 119.99819 * 0.02562 * 21 20 18 48 48 H 0.96996 * 120.00201 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0909 -0.8075 -1.2000 5 7 2.0139 -2.2162 -0.7724 6 6 1.9471 -3.2835 -1.5927 7 8 1.8925 -4.4026 -1.1284 8 6 1.9401 -3.0863 -3.0867 9 6 1.8597 -4.4476 -3.7804 10 6 1.8534 -4.2505 -5.2745 11 6 0.6542 -4.0954 -5.9566 12 6 0.6933 -3.9174 -7.3283 13 6 1.9239 -3.9006 -7.9728 14 8 1.9759 -3.7264 -9.3173 15 7 3.0451 -4.0529 -7.2882 16 6 3.0397 -4.2244 -5.9798 17 6 2.0285 -2.2644 0.6970 18 6 2.0861 -0.8074 1.2025 19 1 3.1129 -0.5165 1.4242 20 6 1.1965 -0.6263 2.4341 21 7 1.7452 -1.3993 3.5510 22 6 1.1136 -1.3901 4.7659 23 1 0.2106 -0.8131 4.9006 24 6 1.6339 -2.1221 5.8243 25 7 2.7346 -2.8248 5.6603 26 14 0.7718 -2.1100 7.4815 27 1 -0.2211 -3.2131 7.5310 28 1 1.7733 -2.2965 8.5618 29 1 0.0777 -0.8105 7.6688 30 1 -0.3633 0.4525 0.9227 31 1 -0.3633 0.5729 -0.8531 32 1 -0.3633 -1.0253 -0.0695 33 1 3.1253 -0.5273 -1.3986 34 1 1.4764 -0.6458 -2.0858 35 1 2.8552 -2.5778 -3.3903 36 1 1.0779 -2.4825 -3.3696 37 1 0.9449 -4.9566 -3.4769 38 1 2.7222 -5.0511 -3.4976 39 1 -0.2879 -4.1132 -5.4286 40 1 -0.2205 -3.7941 -7.8905 41 1 1.9429 -4.5504 -9.8223 42 1 3.9754 -4.3450 -5.4539 43 1 1.1217 -2.7475 1.0611 44 1 2.9048 -2.8137 1.0412 45 1 1.1615 0.4289 2.7050 46 1 0.1893 -0.9773 2.2095 47 1 2.5565 -1.9172 3.4301 48 1 3.0983 -3.3360 6.4000 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733554789.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:59 Heat of formation + Delta-G solvation = -64.116311 kcal Electronic energy + Delta-G solvation = -27806.005590 eV Core-core repulsion = 23859.916137 eV Total energy + Delta-G solvation = -3946.089453 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.56395 -41.19649 -39.29416 -38.19381 -36.44241 -35.12827 -34.19219 -33.07266 -32.77652 -30.99455 -30.00839 -27.75314 -27.20942 -25.71887 -24.70882 -24.59699 -23.04844 -22.42526 -20.46592 -20.15633 -19.77271 -19.05307 -18.18458 -17.95233 -17.42792 -16.92804 -16.72742 -16.54873 -16.11299 -15.75296 -15.41926 -15.32677 -15.16819 -14.78008 -14.36032 -14.32366 -14.15963 -14.06349 -13.78526 -13.70800 -13.30775 -13.06544 -13.03709 -12.91997 -12.87912 -12.77860 -12.62560 -12.56287 -12.16885 -12.02434 -11.89948 -11.63431 -11.50425 -11.42429 -10.97548 -10.91825 -10.79531 -10.39394 -9.73530 -9.65062 -8.99899 -7.95534 -5.24491 -0.01411 0.25917 1.45912 1.48187 1.56436 1.63739 1.99684 2.55118 2.55259 2.85106 3.34917 3.39626 3.51812 3.67328 3.76620 3.83039 3.91391 3.96780 4.03540 4.16990 4.23434 4.26330 4.29938 4.35894 4.48333 4.54678 4.56984 4.67407 4.71442 4.75580 4.80912 4.88179 4.94085 4.99706 5.03417 5.04020 5.12464 5.17077 5.25771 5.29003 5.33685 5.34226 5.49334 5.53410 5.60708 6.26527 6.58082 6.63782 6.95183 7.16541 7.32487 8.09240 8.30802 9.28094 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.025931 B = 0.001904 C = 0.001843 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.517002 B =14700.214762 C =15187.710423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 H 0.119 0.881 4 C 0.102 3.898 5 N -0.615 5.615 6 C 0.516 3.484 7 O -0.594 6.594 8 C -0.116 4.116 9 C -0.054 4.054 10 C -0.137 4.137 11 C -0.054 4.054 12 C -0.179 4.179 13 C 0.287 3.713 14 O -0.497 6.497 15 N -0.534 5.534 16 C 0.119 3.881 17 C 0.125 3.875 18 C -0.094 4.094 19 H 0.083 0.917 20 C 0.163 3.837 21 N -0.748 5.748 22 C -0.244 4.244 23 H 0.077 0.923 24 C -0.079 4.079 25 N -0.971 5.971 26 Si 0.974 3.026 27 H -0.290 1.290 28 H -0.295 1.295 29 H -0.266 1.266 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.035 0.965 33 H 0.090 0.910 34 H 0.110 0.890 35 H 0.116 0.884 36 H 0.120 0.880 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.163 0.837 40 H 0.163 0.837 41 H 0.418 0.582 42 H 0.171 0.829 43 H 0.039 0.961 44 H 0.037 0.963 45 H 0.031 0.969 46 H 0.023 0.977 47 H 0.372 0.628 48 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.436 3.644 -30.473 31.009 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.107 4.107 3 H 0.137 0.863 4 C -0.019 4.019 5 N -0.348 5.348 6 C 0.307 3.693 7 O -0.475 6.475 8 C -0.155 4.155 9 C -0.093 4.093 10 C -0.139 4.139 11 C -0.079 4.079 12 C -0.200 4.200 13 C 0.109 3.891 14 O -0.307 6.307 15 N -0.253 5.253 16 C -0.038 4.038 17 C 0.002 3.998 18 C -0.114 4.114 19 H 0.102 0.898 20 C 0.037 3.963 21 N -0.391 5.391 22 C -0.376 4.376 23 H 0.095 0.905 24 C -0.271 4.271 25 N -0.621 5.621 26 Si 0.803 3.197 27 H -0.217 1.217 28 H -0.222 1.222 29 H -0.191 1.191 30 H 0.074 0.926 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.109 0.891 34 H 0.128 0.872 35 H 0.134 0.866 36 H 0.138 0.862 37 H 0.096 0.904 38 H 0.094 0.906 39 H 0.180 0.820 40 H 0.180 0.820 41 H 0.279 0.721 42 H 0.188 0.812 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.041 0.959 47 H 0.203 0.797 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.824 3.677 -30.568 31.025 hybrid contribution -0.531 -1.258 1.729 2.203 sum -4.356 2.418 -28.840 29.267 Atomic orbital electron populations 1.21765 0.93970 1.01263 1.02854 1.22430 0.96627 0.99904 0.91721 0.86268 1.22770 1.02780 0.78039 0.98350 1.48692 1.72055 1.08072 1.06021 1.21203 0.75100 0.82688 0.90353 1.90720 1.52366 1.25493 1.78933 1.21646 1.06789 0.99782 0.87315 1.20151 1.04446 0.96271 0.88435 1.20835 0.94331 1.02001 0.96757 1.21778 0.99191 0.93553 0.93391 1.22330 0.98711 1.03048 0.95907 1.19501 0.88504 0.95652 0.85427 1.84734 1.95863 1.37060 1.13008 1.67174 1.32882 1.14691 1.10578 1.22693 0.98916 0.94362 0.87810 1.21652 0.99760 0.97845 0.80556 1.22352 1.00466 0.93290 0.95260 0.89829 1.20871 0.95049 0.94422 0.85947 1.42636 1.30657 1.57306 1.08453 1.19642 1.06016 1.22931 0.88978 0.90468 1.25599 0.98858 1.00521 1.02083 1.69823 1.23901 1.36081 1.32335 0.85131 0.77152 0.78028 0.79407 1.21713 1.22198 1.19064 0.92610 0.89693 0.94545 0.89144 0.87151 0.86576 0.86226 0.90405 0.90638 0.81954 0.81972 0.72141 0.81239 0.94295 0.94465 0.95065 0.95878 0.79676 0.94094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 8.15 71.98 0.59 -2.10 16 2 C -0.09 -1.64 3.54 -9.32 -0.03 -1.67 16 3 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 4 C 0.10 1.58 6.17 86.93 0.54 2.12 16 5 N -0.62 -15.55 3.31 -811.34 -2.69 -18.24 16 6 C 0.52 13.43 7.85 87.66 0.69 14.12 16 7 O -0.59 -21.85 16.31 -3.04 -0.05 -21.90 16 8 C -0.12 -1.66 4.68 29.85 0.14 -1.52 16 9 C -0.05 -0.83 4.66 29.85 0.14 -0.69 16 10 C -0.14 -1.81 5.15 -19.77 -0.10 -1.91 16 11 C -0.05 -0.58 9.85 22.45 0.22 -0.35 16 12 C -0.18 -2.04 10.04 22.47 0.23 -1.81 16 13 C 0.29 4.63 7.75 84.80 0.66 5.29 16 14 O -0.50 -6.86 13.56 -89.95 -1.22 -8.08 16 15 N -0.53 -10.31 10.39 -308.95 -3.21 -13.52 16 16 C 0.12 1.84 10.85 84.63 0.92 2.76 16 17 C 0.13 4.27 5.83 86.73 0.51 4.77 16 18 C -0.09 -2.79 2.87 -9.60 -0.03 -2.82 16 19 H 0.08 2.52 8.14 -2.39 -0.02 2.50 16 20 C 0.16 6.25 4.52 86.38 0.39 6.64 16 21 N -0.75 -38.30 5.45 -343.46 -1.87 -40.17 16 22 C -0.24 -13.77 9.99 84.03 0.84 -12.93 16 23 H 0.08 4.15 7.83 -2.91 -0.02 4.13 16 24 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 25 N -0.97 -60.89 13.06 21.65 0.28 -60.61 16 26 Si 0.97 46.88 29.55 68.60 2.03 48.91 16 27 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 28 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 29 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 30 H 0.05 1.21 6.76 -2.39 -0.02 1.19 16 31 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 0.84 7.91 -2.39 -0.02 0.82 16 33 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 34 H 0.11 1.01 7.40 -2.38 -0.02 0.99 16 35 H 0.12 1.22 8.14 -2.38 -0.02 1.20 16 36 H 0.12 1.13 7.85 -2.39 -0.02 1.11 16 37 H 0.08 1.31 8.05 -2.39 -0.02 1.29 16 38 H 0.07 1.33 8.05 -2.38 -0.02 1.31 16 39 H 0.16 1.00 8.06 -2.91 -0.02 0.97 16 40 H 0.16 1.05 8.06 -2.91 -0.02 1.03 16 41 H 0.42 1.62 9.06 -74.06 -0.67 0.94 16 42 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.04 1.58 7.77 -2.38 -0.02 1.56 16 44 H 0.04 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.02 0.91 6.67 -2.39 -0.02 0.89 16 47 H 0.37 20.52 7.52 -92.71 -0.70 19.82 16 48 H 0.25 15.24 8.31 -92.71 -0.77 14.47 16 Total: -1.00 -82.13 394.69 -0.96 -83.09 By element: Atomic # 1 Polarization: 25.15 SS G_CDS: -0.39 Total: 24.76 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: 6.15 Total: 5.75 kcal Atomic # 7 Polarization: -125.05 SS G_CDS: -7.48 Total: -132.53 kcal Atomic # 8 Polarization: -28.71 SS G_CDS: -1.27 Total: -29.98 kcal Atomic # 14 Polarization: 46.88 SS G_CDS: 2.03 Total: 48.91 kcal Total: -82.13 -0.96 -83.09 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733554789.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.979 kcal (2) G-P(sol) polarization free energy of solvation -82.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.152 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds