Wall clock time and date at job start Tue Mar 31 2020 17:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.59073 * 2 1 4 4 C 1.53185 * 109.58994 * 239.71051 * 2 1 3 5 5 H 1.09000 * 109.52452 * 65.61205 * 4 2 1 6 6 N 1.46502 * 109.50114 * 305.53557 * 4 2 1 7 7 C 1.34770 * 120.00293 * 155.16186 * 6 4 2 8 8 O 1.21280 * 120.00287 * 359.97438 * 7 6 4 9 9 C 1.50706 * 119.99968 * 180.02562 * 7 6 4 10 10 C 1.52999 * 109.47038 * 180.02562 * 9 7 6 11 11 C 1.50696 * 109.47128 * 180.02562 * 10 9 7 12 12 C 1.38839 * 120.34897 * 269.71668 * 11 10 9 13 13 C 1.38384 * 118.48104 * 179.80009 * 12 11 10 14 14 C 1.38921 * 119.11391 * 0.45526 * 13 12 11 15 15 O 1.35671 * 119.68573 * 179.77084 * 14 13 12 16 16 N 1.32253 * 120.62580 * 359.78536 * 14 13 12 17 17 C 1.31962 * 121.64940 * 359.97438 * 16 14 13 18 18 C 1.53043 * 109.31619 * 185.58186 * 4 2 1 19 19 C 1.53040 * 109.52490 * 61.37058 * 18 4 2 20 20 C 1.53184 * 109.31474 * 298.61818 * 19 18 4 21 21 N 1.46922 * 108.76654 * 54.65413 * 20 19 18 22 22 C 1.36941 * 120.62921 * 126.36048 * 21 20 19 23 23 H 1.08008 * 120.00144 * 209.02547 * 22 21 20 24 24 C 1.38813 * 120.00044 * 29.03481 * 22 21 20 25 25 N 1.31616 * 120.00052 * 15.00882 * 24 22 21 26 26 Si 1.86800 * 119.99936 * 195.02262 * 24 22 21 27 27 H 1.48499 * 109.47469 * 59.99032 * 26 24 22 28 28 H 1.48501 * 109.47115 * 179.97438 * 26 24 22 29 29 H 1.48506 * 109.46772 * 299.99441 * 26 24 22 30 30 H 1.08993 * 109.47312 * 180.28510 * 1 2 3 31 31 H 1.09000 * 109.47675 * 300.28816 * 1 2 3 32 32 H 1.09005 * 109.46550 * 60.28727 * 1 2 3 33 33 H 0.97001 * 119.99414 * 335.15521 * 6 4 2 34 34 H 1.09005 * 109.46746 * 299.99142 * 9 7 6 35 35 H 1.08996 * 109.47249 * 59.99421 * 9 7 6 36 36 H 1.09004 * 109.47103 * 299.99354 * 10 9 7 37 37 H 1.08996 * 109.47619 * 59.99592 * 10 9 7 38 38 H 1.07997 * 120.76293 * 0.02562 * 12 11 10 39 39 H 1.07995 * 120.44207 * 180.19727 * 13 12 11 40 40 H 0.96703 * 113.99791 * 270.01480 * 15 14 13 41 41 H 1.08007 * 119.57683 * 179.97438 * 17 16 14 42 42 H 1.09001 * 109.46182 * 181.38534 * 18 4 2 43 43 H 1.09002 * 109.45836 * 301.36097 * 18 4 2 44 44 H 1.09001 * 109.49721 * 58.58348 * 19 18 4 45 45 H 1.09004 * 109.49341 * 178.67789 * 19 18 4 46 46 H 1.09006 * 109.59702 * 294.86734 * 20 19 18 47 47 H 1.09004 * 109.58996 * 174.44050 * 20 19 18 48 48 H 0.97005 * 119.99933 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8955 1.0269 0.0000 4 6 2.0436 -0.7279 -1.2462 5 1 1.7661 -0.1648 -2.1372 6 7 1.4514 -2.0664 -1.3096 7 6 1.3315 -2.6947 -2.4958 8 8 1.7134 -2.1520 -3.5109 9 6 0.7217 -4.0714 -2.5610 10 6 0.7047 -4.5533 -4.0130 11 6 0.0945 -5.9296 -4.0784 12 6 0.8953 -7.0582 -3.9655 13 6 0.2938 -8.3030 -4.0266 14 6 -1.0814 -8.3810 -4.2075 15 8 -1.6825 -9.5955 -4.2738 16 7 -1.8101 -7.2827 -4.3159 17 6 -1.2658 -6.0820 -4.2567 18 6 3.5675 -0.8467 -1.1710 19 6 3.9565 -1.6660 0.0617 20 6 3.4649 -0.9486 1.3227 21 7 2.0225 -0.7010 1.1937 22 6 1.1535 -1.1161 2.1672 23 1 0.1357 -1.3704 1.9100 24 6 1.5805 -1.2100 3.4847 25 7 2.7036 -0.6323 3.8552 26 14 0.5615 -2.1566 4.7317 27 1 0.4322 -3.5700 4.2947 28 1 1.2301 -2.1077 6.0567 29 1 -0.7878 -1.5450 4.8347 30 1 -0.3633 -1.0276 0.0051 31 1 -0.3634 0.5183 0.8874 32 1 -0.3632 0.5094 -0.8926 33 1 1.1457 -2.5004 -0.4977 34 1 1.3132 -4.7597 -1.9572 35 1 -0.2979 -4.0357 -2.1776 36 1 0.1136 -3.8652 -4.6174 37 1 1.7246 -4.5891 -4.3960 38 1 1.9627 -6.9667 -3.8293 39 1 0.8861 -9.2018 -3.9391 40 1 -1.7409 -9.9571 -5.1687 41 1 -1.8927 -5.2073 -4.3496 42 1 3.9379 -1.3425 -2.0683 43 1 4.0062 0.1486 -1.0987 44 1 3.4977 -2.6530 0.0021 45 1 5.0408 -1.7702 0.1019 46 1 3.9902 0.0002 1.4318 47 1 3.6516 -1.5744 2.1955 48 1 3.0022 -0.6982 4.7758 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734464699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:37 Heat of formation + Delta-G solvation = -31.876238 kcal Electronic energy + Delta-G solvation = -28900.459746 eV Core-core repulsion = 24955.768328 eV Total energy + Delta-G solvation = -3944.691418 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.78640 -39.76334 -37.86627 -37.40773 -34.30781 -33.90455 -32.50439 -32.31954 -31.71857 -29.95270 -28.97979 -26.36174 -25.14161 -24.81084 -24.01161 -22.34377 -21.65881 -20.81889 -20.06051 -19.12877 -18.73836 -17.23328 -17.09224 -16.46460 -16.29715 -15.46217 -15.33294 -15.26852 -14.91436 -14.56284 -14.07503 -13.86080 -13.76256 -13.53248 -13.39915 -13.24545 -12.98416 -12.84670 -12.56952 -12.19552 -12.16792 -11.90639 -11.79829 -11.31674 -11.26907 -11.15889 -10.99536 -10.73963 -10.64839 -10.55537 -10.16455 -10.15036 -10.04994 -9.72535 -9.68350 -9.53456 -9.34398 -9.00503 -8.57612 -8.46597 -6.72036 -5.85020 -3.30529 0.67239 0.92510 2.95003 3.17310 3.32513 3.38865 3.39815 3.45676 3.66107 4.36433 4.41557 4.51589 4.63477 4.68683 4.88378 4.99749 5.12187 5.24634 5.28578 5.31797 5.36010 5.51904 5.55621 5.61975 5.65995 5.69936 5.72363 5.93426 5.95648 6.06127 6.09394 6.19336 6.23741 6.30261 6.38706 6.49958 6.64309 6.64895 6.75078 6.90848 6.93919 7.08909 7.15518 7.34702 7.62400 7.63209 7.73473 8.00415 8.37990 8.60731 9.14186 9.77193 10.34047 11.22768 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.012202 B = 0.002857 C = 0.002533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.133613 B = 9796.451155 C =11052.604769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.159 3.841 3 H 0.038 0.962 4 C 0.134 3.866 5 H 0.075 0.925 6 N -0.700 5.700 7 C 0.509 3.491 8 O -0.558 6.558 9 C -0.138 4.138 10 C -0.057 4.057 11 C -0.138 4.138 12 C -0.057 4.057 13 C -0.183 4.183 14 C 0.300 3.700 15 O -0.484 6.484 16 N -0.502 5.502 17 C 0.127 3.873 18 C -0.120 4.120 19 C -0.140 4.140 20 C 0.170 3.830 21 N -0.586 5.586 22 C -0.257 4.257 23 H 0.070 0.930 24 C 0.006 3.994 25 N -0.901 5.901 26 Si 0.900 3.100 27 H -0.284 1.284 28 H -0.291 1.291 29 H -0.283 1.283 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.039 0.961 33 H 0.409 0.591 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.398 0.602 41 H 0.161 0.839 42 H 0.049 0.951 43 H 0.061 0.939 44 H 0.052 0.948 45 H 0.046 0.954 46 H 0.017 0.983 47 H 0.088 0.912 48 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.642 -11.064 -15.965 19.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 H 0.056 0.944 4 C 0.028 3.972 5 H 0.093 0.907 6 N -0.351 5.351 7 C 0.294 3.706 8 O -0.437 6.437 9 C -0.178 4.178 10 C -0.096 4.096 11 C -0.140 4.140 12 C -0.083 4.083 13 C -0.204 4.204 14 C 0.121 3.879 15 O -0.291 6.291 16 N -0.220 5.220 17 C -0.030 4.030 18 C -0.159 4.159 19 C -0.179 4.179 20 C 0.045 3.955 21 N -0.309 5.309 22 C -0.386 4.386 23 H 0.088 0.912 24 C -0.193 4.193 25 N -0.544 5.544 26 Si 0.730 3.270 27 H -0.210 1.210 28 H -0.217 1.217 29 H -0.209 1.209 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.245 0.755 34 H 0.110 0.890 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.159 0.841 39 H 0.158 0.842 40 H 0.256 0.744 41 H 0.179 0.821 42 H 0.068 0.932 43 H 0.080 0.920 44 H 0.071 0.929 45 H 0.065 0.935 46 H 0.035 0.965 47 H 0.106 0.894 48 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -3.254 -10.741 -15.981 19.528 hybrid contribution 0.362 -0.763 0.901 1.234 sum -2.892 -11.504 -15.080 19.186 Atomic orbital electron populations 1.21779 0.95648 1.01431 1.00413 1.20722 0.93350 0.93916 0.86880 0.94400 1.21518 0.92859 0.83201 0.99661 0.90695 1.46038 1.61306 1.18597 1.09161 1.20497 0.78922 0.87407 0.83730 1.90656 1.50800 1.67709 1.34574 1.21658 1.03032 0.94947 0.98138 1.20234 1.02293 0.90991 0.96054 1.21009 0.95093 0.96750 1.01191 1.21499 1.00823 0.91115 0.94821 1.22116 0.94543 0.99414 1.04289 1.19202 0.87329 0.84988 0.96381 1.84797 1.81555 1.28863 1.33854 1.67177 1.41464 0.98879 1.14480 1.22489 0.92308 0.93722 0.94475 1.21765 0.95577 1.00400 0.98165 1.22138 0.98866 0.99527 0.97359 1.20817 0.83132 0.97205 0.94356 1.44153 1.03103 1.64754 1.18930 1.19115 0.94819 1.38351 0.86361 0.91219 1.25093 0.97715 0.99523 0.96974 1.70005 1.23235 1.44210 1.16987 0.86414 0.79685 0.80102 0.80776 1.21040 1.21703 1.20897 0.92786 0.91834 0.94221 0.75498 0.88951 0.88858 0.89668 0.89840 0.84136 0.84217 0.74429 0.82148 0.93192 0.92023 0.92902 0.93539 0.96463 0.89426 0.93560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 7.72 37.16 0.29 -2.07 16 2 C 0.16 3.03 3.20 -67.60 -0.22 2.82 16 3 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 4 C 0.13 2.28 2.32 -67.81 -0.16 2.12 16 5 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 6 N -0.70 -10.87 3.47 -53.69 -0.19 -11.06 16 7 C 0.51 7.36 7.79 -10.99 -0.09 7.28 16 8 O -0.56 -9.67 15.65 5.56 0.09 -9.59 16 9 C -0.14 -1.47 5.68 -27.88 -0.16 -1.63 16 10 C -0.06 -0.55 4.66 -27.89 -0.13 -0.68 16 11 C -0.14 -1.27 5.15 -104.48 -0.54 -1.81 16 12 C -0.06 -0.48 9.85 -39.31 -0.39 -0.87 16 13 C -0.18 -1.57 10.04 -39.27 -0.39 -1.96 16 14 C 0.30 3.11 7.74 -17.12 -0.13 2.98 16 15 O -0.48 -4.37 13.56 -18.71 -0.25 -4.62 16 16 N -0.50 -5.86 10.39 -13.33 -0.14 -6.00 16 17 C 0.13 1.26 10.85 -17.57 -0.19 1.07 16 18 C -0.12 -2.06 5.58 -26.69 -0.15 -2.21 16 19 C -0.14 -2.56 5.93 -26.62 -0.16 -2.72 16 20 C 0.17 3.80 5.29 -3.72 -0.02 3.78 16 21 N -0.59 -13.09 2.65 -164.78 -0.44 -13.53 16 22 C -0.26 -6.31 8.61 -15.06 -0.13 -6.44 16 23 H 0.07 1.65 6.20 -52.48 -0.33 1.33 16 24 C 0.01 0.16 4.96 -17.43 -0.09 0.07 16 25 N -0.90 -24.82 11.14 55.49 0.62 -24.21 16 26 Si 0.90 20.58 29.58 -169.99 -5.03 15.55 16 27 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 28 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 29 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 30 H 0.05 0.92 6.37 -51.93 -0.33 0.59 16 31 H 0.06 1.21 7.66 -51.93 -0.40 0.81 16 32 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.41 6.54 7.77 -40.82 -0.32 6.22 16 34 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.08 0.83 8.05 -51.93 -0.42 0.42 16 37 H 0.08 0.83 8.05 -51.93 -0.42 0.41 16 38 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 39 H 0.14 0.90 8.06 -52.49 -0.42 0.48 16 40 H 0.40 1.49 9.06 45.56 0.41 1.90 16 41 H 0.16 1.29 8.06 -52.48 -0.42 0.86 16 42 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 43 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 44 H 0.05 0.97 7.53 -51.93 -0.39 0.58 16 45 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 46 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 47 H 0.09 2.21 6.06 -51.93 -0.31 1.89 16 48 H 0.25 6.88 8.31 -40.82 -0.34 6.54 16 LS Contribution 385.07 15.07 5.80 5.80 Total: -1.00 -31.19 385.07 -8.86 -40.05 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -6.68 Total: 7.86 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: -2.65 Total: -0.26 kcal Atomic # 7 Polarization: -54.65 SS G_CDS: -0.14 Total: -54.79 kcal Atomic # 8 Polarization: -14.04 SS G_CDS: -0.17 Total: -14.21 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.03 Total: 15.55 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.19 -8.86 -40.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734464699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.170 kcal (2) G-P(sol) polarization free energy of solvation -31.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds