Wall clock time and date at job start Tue Mar 31 2020 17:46:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.30507 * 2 1 4 4 C 1.54389 * 110.43117 * 237.77036 * 2 1 3 5 5 N 1.48154 * 104.61471 * 264.94833 * 4 2 1 6 6 C 1.34775 * 127.83581 * 140.43465 * 5 4 2 7 7 O 1.21287 * 119.99371 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00302 * 0.02562 * 6 5 4 9 9 O 1.42908 * 109.46937 * 179.97438 * 8 6 5 10 10 C 1.42901 * 113.99580 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46873 * 180.02562 * 10 9 8 12 12 C 1.38678 * 120.41618 * 269.72195 * 11 10 9 13 13 C 1.38622 * 118.41910 * 179.78313 * 12 11 10 14 14 C 1.38233 * 119.16381 * 0.51123 * 13 12 11 15 15 N 1.31853 * 120.75873 * 359.72531 * 14 13 12 16 16 C 1.31882 * 121.72693 * 0.02562 * 15 14 13 17 17 C 1.48144 * 104.32110 * 320.41346 * 5 4 2 18 18 C 1.54281 * 110.34704 * 122.17650 * 2 1 3 19 19 H 1.09002 * 110.34302 * 237.84737 * 18 2 1 20 20 C 1.53006 * 110.33853 * 359.97438 * 18 2 1 21 21 N 1.46501 * 109.46453 * 183.52632 * 20 18 2 22 22 C 1.36947 * 119.99507 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99968 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00019 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00199 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99903 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47388 * 90.00064 * 26 24 22 28 28 H 1.48500 * 109.47074 * 210.00286 * 26 24 22 29 29 H 1.48497 * 109.47317 * 330.00087 * 26 24 22 30 30 H 1.09004 * 109.46885 * 297.82102 * 1 2 3 31 31 H 1.09004 * 109.47333 * 57.82297 * 1 2 3 32 32 H 1.09001 * 109.46905 * 177.82599 * 1 2 3 33 33 H 1.09000 * 110.41208 * 23.72685 * 4 2 1 34 34 H 1.09000 * 110.41204 * 146.16777 * 4 2 1 35 35 H 1.08994 * 109.47414 * 300.00066 * 8 6 5 36 36 H 1.09001 * 109.46827 * 59.99960 * 8 6 5 37 37 H 1.09004 * 109.47118 * 300.00288 * 10 9 8 38 38 H 1.09000 * 109.47507 * 60.00182 * 10 9 8 39 39 H 1.07998 * 120.78947 * 0.02562 * 12 11 10 40 40 H 1.08000 * 120.42051 * 180.21890 * 13 12 11 41 41 H 1.07997 * 119.62279 * 179.74621 * 14 13 12 42 42 H 1.08008 * 119.61565 * 179.97438 * 16 15 14 43 43 H 1.08999 * 110.40697 * 280.80114 * 17 5 4 44 44 H 1.08998 * 110.40769 * 158.37404 * 17 5 4 45 45 H 1.09003 * 109.46961 * 303.52247 * 20 18 2 46 46 H 1.09002 * 109.47250 * 63.53000 * 20 18 2 47 47 H 0.96996 * 120.00999 * 359.97438 * 21 20 18 48 48 H 0.96994 * 120.00647 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1429 -0.7213 6 6 2.0838 -3.3101 -1.3533 7 8 2.3431 -4.3597 -0.8037 8 6 1.5001 -3.3110 -2.7426 9 8 1.3474 -4.6582 -3.1942 10 6 0.7988 -4.7718 -4.5088 11 6 0.6821 -6.2276 -4.8803 12 6 1.7279 -6.8747 -5.5211 13 6 1.5779 -8.2155 -5.8396 14 6 0.3952 -8.8556 -5.5199 15 7 -0.5803 -8.2070 -4.9146 16 6 -0.4707 -6.9329 -4.5923 17 6 2.8825 -1.9400 0.6332 18 6 2.0664 -0.7703 1.2244 19 1 2.7082 -0.1264 1.8258 20 6 0.9062 -1.3010 2.0690 21 7 1.4348 -1.9553 3.2684 22 6 0.5767 -2.5105 4.1799 23 1 -0.4896 -2.4657 4.0147 24 6 1.0774 -3.1300 5.3167 25 7 0.2528 -3.6641 6.1925 26 14 2.9218 -3.2069 5.6029 27 1 3.3545 -2.0094 6.3671 28 1 3.2524 -4.4323 6.3738 29 1 3.6247 -3.2402 4.2952 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8698 32 1 -0.3633 -1.0269 -0.0390 33 1 1.3253 -0.7880 -2.0206 34 1 2.9968 -0.3225 -1.5780 35 1 0.5272 -2.8197 -2.7283 36 1 2.1677 -2.7753 -3.4175 37 1 -0.1888 -4.3110 -4.5315 38 1 1.4520 -4.2662 -5.2201 39 1 2.6391 -6.3477 -5.7627 40 1 2.3732 -8.7520 -6.3357 41 1 0.2688 -9.8990 -5.7683 42 1 -1.2915 -6.4350 -4.0973 43 1 3.9374 -1.6733 0.5691 44 1 2.7526 -2.8377 1.2375 45 1 0.2611 -0.4724 2.3614 46 1 0.3317 -2.0207 1.4858 47 1 2.3925 -1.9959 3.4167 48 1 0.6026 -4.0974 6.9866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754826531.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:31 Heat of formation + Delta-G solvation = -16.330969 kcal Electronic energy + Delta-G solvation = -28240.598450 eV Core-core repulsion = 24296.581125 eV Total energy + Delta-G solvation = -3944.017325 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.53080 -40.21955 -38.54483 -37.33687 -34.74856 -33.28153 -32.84949 -32.08325 -31.35508 -29.94275 -28.38793 -26.89663 -26.13725 -25.07392 -23.89718 -22.96812 -22.36478 -21.71302 -19.52459 -19.19870 -17.73727 -17.45786 -17.23718 -17.06946 -16.70450 -16.43017 -15.82524 -15.69241 -15.11641 -14.74442 -14.16498 -14.05720 -14.05155 -13.91509 -13.58770 -13.50171 -13.39282 -12.95917 -12.73269 -12.61116 -12.49684 -12.36900 -12.05831 -11.87463 -11.74489 -11.61370 -11.21721 -10.91439 -10.69377 -10.48161 -10.30612 -10.18112 -10.11709 -9.97010 -9.76322 -9.71321 -9.53782 -9.38727 -8.84020 -8.68622 -7.17844 -5.71630 -3.07090 0.69181 0.95622 2.57038 2.64201 3.38642 3.41861 3.44627 3.50025 3.80239 4.14327 4.31090 4.39970 4.44299 4.52100 4.61021 4.64323 4.65785 4.74463 4.76292 4.81598 4.92250 4.95863 5.01353 5.21292 5.24535 5.27884 5.35598 5.43815 5.44180 5.58273 5.61581 5.71244 5.75335 5.82017 5.88869 5.90456 5.97389 6.03455 6.23081 6.26379 6.34873 6.36968 6.67288 6.69381 6.81066 7.54644 7.65748 8.03819 8.20869 8.47092 9.25920 9.98354 10.17355 11.46967 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.002594 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.860559 B =10791.377608 C =12145.931915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.097 4.097 3 H 0.086 0.914 4 C 0.102 3.898 5 N -0.620 5.620 6 C 0.532 3.468 7 O -0.511 6.511 8 C 0.051 3.949 9 O -0.356 6.356 10 C 0.106 3.894 11 C -0.142 4.142 12 C -0.053 4.053 13 C -0.177 4.177 14 C 0.103 3.897 15 N -0.486 5.486 16 C 0.124 3.876 17 C 0.109 3.891 18 C -0.111 4.111 19 H 0.087 0.913 20 C 0.166 3.834 21 N -0.756 5.756 22 C -0.242 4.242 23 H 0.089 0.911 24 C 0.004 3.996 25 N -0.935 5.935 26 Si 0.884 3.116 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.277 1.277 30 H 0.068 0.932 31 H 0.050 0.950 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.066 0.934 38 H 0.062 0.938 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.158 0.842 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.033 0.967 46 H 0.029 0.971 47 H 0.359 0.641 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.967 4.363 -29.720 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.117 4.117 3 H 0.104 0.896 4 C -0.021 4.021 5 N -0.357 5.357 6 C 0.319 3.681 7 O -0.385 6.385 8 C -0.029 4.029 9 O -0.274 6.274 10 C 0.029 3.971 11 C -0.144 4.144 12 C -0.079 4.079 13 C -0.197 4.197 14 C -0.053 4.053 15 N -0.195 5.195 16 C -0.033 4.033 17 C -0.013 4.013 18 C -0.130 4.130 19 H 0.105 0.895 20 C 0.039 3.961 21 N -0.402 5.402 22 C -0.372 4.372 23 H 0.107 0.893 24 C -0.192 4.192 25 N -0.583 5.583 26 Si 0.714 3.286 27 H -0.211 1.211 28 H -0.217 1.217 29 H -0.203 1.203 30 H 0.087 0.913 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.091 0.909 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.084 0.916 38 H 0.080 0.920 39 H 0.153 0.847 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.175 0.825 43 H 0.085 0.915 44 H 0.114 0.886 45 H 0.051 0.949 46 H 0.046 0.954 47 H 0.192 0.808 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.139 2.957 -29.063 29.382 hybrid contribution 2.099 0.623 0.005 2.190 sum 5.239 3.580 -29.058 29.743 Atomic orbital electron populations 1.21937 0.94123 1.02590 1.01930 1.22070 0.96910 0.98969 0.93758 0.89614 1.22545 1.00378 0.82092 0.97090 1.48843 1.63897 1.04960 1.17968 1.19709 0.78948 0.82580 0.86888 1.90797 1.50602 1.30224 1.66834 1.22164 1.01213 0.85560 0.93945 1.88125 1.84223 1.24029 1.31010 1.21257 0.98710 0.92403 0.84723 1.20556 0.96110 0.96579 1.01192 1.21525 0.97671 0.94483 0.94241 1.22161 0.99586 0.95428 1.02517 1.22866 0.89036 1.00139 0.93297 1.67757 1.31373 1.09170 1.11166 1.22754 0.96565 0.89808 0.94187 1.22482 0.96086 1.00336 0.82420 1.22422 0.98536 0.96091 0.95995 0.89485 1.20794 0.93097 0.95123 0.87087 1.42762 1.04960 1.69407 1.23071 1.19025 0.91067 1.28660 0.98429 0.89322 1.24668 0.97073 1.00322 0.97091 1.69695 1.33090 1.42874 1.12617 0.86546 0.87051 0.77312 0.77649 1.21134 1.21715 1.20273 0.91325 0.93103 0.91964 0.90475 0.90943 0.90072 0.90397 0.91629 0.91968 0.84693 0.84541 0.82591 0.82500 0.91509 0.88583 0.94916 0.95353 0.80801 0.93088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.93 37.16 0.29 -1.25 16 2 C -0.10 -0.97 3.65 -89.22 -0.33 -1.30 16 3 H 0.09 0.69 8.14 -51.93 -0.42 0.26 16 4 C 0.10 0.90 6.47 -2.40 -0.02 0.88 16 5 N -0.62 -8.26 3.32 -169.30 -0.56 -8.82 16 6 C 0.53 8.15 7.99 -10.99 -0.09 8.06 16 7 O -0.51 -10.77 16.77 -14.36 -0.24 -11.01 16 8 C 0.05 0.53 5.40 36.00 0.19 0.72 16 9 O -0.36 -4.50 9.86 -55.14 -0.54 -5.04 16 10 C 0.11 0.88 6.09 36.00 0.22 1.10 16 11 C -0.14 -1.38 5.53 -104.48 -0.58 -1.96 16 12 C -0.05 -0.45 9.86 -39.28 -0.39 -0.84 16 13 C -0.18 -1.39 10.11 -39.44 -0.40 -1.78 16 14 C 0.10 0.94 11.18 -17.54 -0.20 0.74 16 15 N -0.49 -5.61 10.36 -13.25 -0.14 -5.74 16 16 C 0.12 1.32 10.86 -17.55 -0.19 1.13 16 17 C 0.11 1.65 6.44 -2.41 -0.02 1.64 16 18 C -0.11 -1.56 3.11 -89.22 -0.28 -1.84 16 19 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.17 3.15 4.41 -4.04 -0.02 3.14 16 21 N -0.76 -18.28 4.97 -59.90 -0.30 -18.58 16 22 C -0.24 -7.06 10.47 -15.06 -0.16 -7.22 16 23 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 24 C 0.00 0.12 5.50 -17.43 -0.10 0.03 16 25 N -0.93 -30.26 13.97 55.49 0.78 -29.49 16 26 Si 0.88 22.85 27.74 -169.99 -4.71 18.14 16 27 H -0.28 -7.18 7.11 56.52 0.40 -6.78 16 28 H -0.29 -7.66 7.11 56.52 0.40 -7.25 16 29 H -0.28 -6.76 6.52 56.52 0.37 -6.39 16 30 H 0.07 0.78 6.71 -51.93 -0.35 0.43 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.76 6.90 -51.93 -0.36 0.41 16 33 H 0.08 0.50 7.03 -51.93 -0.36 0.14 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.65 7.95 -51.93 -0.41 0.24 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.07 0.42 8.09 -51.93 -0.42 -0.01 16 38 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 39 H 0.14 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 41 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 42 H 0.16 1.42 8.06 -52.48 -0.42 1.00 16 43 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.10 1.89 7.20 -51.93 -0.37 1.52 16 45 H 0.03 0.62 6.58 -51.93 -0.34 0.28 16 46 H 0.03 0.59 7.01 -51.93 -0.36 0.23 16 47 H 0.36 8.46 5.36 -40.82 -0.22 8.24 16 48 H 0.26 7.98 8.31 -40.82 -0.34 7.64 16 LS Contribution 391.08 15.07 5.89 5.89 Total: -1.00 -39.21 391.08 -9.31 -48.52 By element: Atomic # 1 Polarization: 12.31 SS G_CDS: -7.44 Total: 4.87 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -2.04 Total: 1.26 kcal Atomic # 7 Polarization: -62.40 SS G_CDS: -0.22 Total: -62.62 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.78 Total: -16.05 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.71 Total: 18.14 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -39.21 -9.31 -48.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754826531.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.184 kcal (2) G-P(sol) polarization free energy of solvation -39.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds