Wall clock time and date at job start Tue Mar 31 2020 17:46:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09002 * 110.30507 * 2 1 4 4 C 1.54389 * 110.43117 * 237.77036 * 2 1 3 5 5 N 1.48154 * 104.61471 * 264.94833 * 4 2 1 6 6 C 1.34775 * 127.83581 * 140.43465 * 5 4 2 7 7 O 1.21287 * 119.99371 * 180.02562 * 6 5 4 8 8 C 1.50696 * 120.00302 * 0.02562 * 6 5 4 9 9 O 1.42908 * 109.46937 * 179.97438 * 8 6 5 10 10 C 1.42901 * 113.99580 * 180.02562 * 9 8 6 11 11 C 1.50697 * 109.46873 * 180.02562 * 10 9 8 12 12 C 1.38678 * 120.41618 * 269.72195 * 11 10 9 13 13 C 1.38622 * 118.41910 * 179.78313 * 12 11 10 14 14 C 1.38233 * 119.16381 * 0.51123 * 13 12 11 15 15 N 1.31853 * 120.75873 * 359.72531 * 14 13 12 16 16 C 1.31882 * 121.72693 * 0.02562 * 15 14 13 17 17 C 1.48144 * 104.32110 * 320.41346 * 5 4 2 18 18 C 1.54281 * 110.34704 * 122.17650 * 2 1 3 19 19 H 1.09002 * 110.34302 * 237.84737 * 18 2 1 20 20 C 1.53006 * 110.33853 * 359.97438 * 18 2 1 21 21 N 1.46501 * 109.46453 * 183.52632 * 20 18 2 22 22 C 1.36947 * 119.99507 * 180.02562 * 21 20 18 23 23 H 1.08000 * 119.99968 * 359.97438 * 22 21 20 24 24 C 1.38811 * 120.00019 * 180.02562 * 22 21 20 25 25 N 1.31614 * 120.00199 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99903 * 359.97438 * 24 22 21 27 27 H 1.48502 * 109.47388 * 90.00064 * 26 24 22 28 28 H 1.48500 * 109.47074 * 210.00286 * 26 24 22 29 29 H 1.48497 * 109.47317 * 330.00087 * 26 24 22 30 30 H 1.09004 * 109.46885 * 297.82102 * 1 2 3 31 31 H 1.09004 * 109.47333 * 57.82297 * 1 2 3 32 32 H 1.09001 * 109.46905 * 177.82599 * 1 2 3 33 33 H 1.09000 * 110.41208 * 23.72685 * 4 2 1 34 34 H 1.09000 * 110.41204 * 146.16777 * 4 2 1 35 35 H 1.08994 * 109.47414 * 300.00066 * 8 6 5 36 36 H 1.09001 * 109.46827 * 59.99960 * 8 6 5 37 37 H 1.09004 * 109.47118 * 300.00288 * 10 9 8 38 38 H 1.09000 * 109.47507 * 60.00182 * 10 9 8 39 39 H 1.07998 * 120.78947 * 0.02562 * 12 11 10 40 40 H 1.08000 * 120.42051 * 180.21890 * 13 12 11 41 41 H 1.07997 * 119.62279 * 179.74621 * 14 13 12 42 42 H 1.08008 * 119.61565 * 179.97438 * 16 15 14 43 43 H 1.08999 * 110.40697 * 280.80114 * 17 5 4 44 44 H 1.08998 * 110.40769 * 158.37404 * 17 5 4 45 45 H 1.09003 * 109.46961 * 303.52247 * 20 18 2 46 46 H 1.09002 * 109.47250 * 63.53000 * 20 18 2 47 47 H 0.96996 * 120.00999 * 359.97438 * 21 20 18 48 48 H 0.96994 * 120.00647 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9082 1.0223 0.0000 4 6 2.0689 -0.7716 -1.2238 5 7 2.3177 -2.1429 -0.7213 6 6 2.0838 -3.3101 -1.3533 7 8 2.3431 -4.3597 -0.8037 8 6 1.5001 -3.3110 -2.7426 9 8 1.3474 -4.6582 -3.1942 10 6 0.7988 -4.7718 -4.5088 11 6 0.6821 -6.2276 -4.8803 12 6 1.7279 -6.8747 -5.5211 13 6 1.5779 -8.2155 -5.8396 14 6 0.3952 -8.8556 -5.5199 15 7 -0.5803 -8.2070 -4.9146 16 6 -0.4707 -6.9329 -4.5923 17 6 2.8825 -1.9400 0.6332 18 6 2.0664 -0.7703 1.2244 19 1 2.7082 -0.1264 1.8258 20 6 0.9062 -1.3010 2.0690 21 7 1.4348 -1.9553 3.2684 22 6 0.5767 -2.5105 4.1799 23 1 -0.4896 -2.4657 4.0147 24 6 1.0774 -3.1300 5.3167 25 7 0.2528 -3.6641 6.1925 26 14 2.9218 -3.2069 5.6029 27 1 3.3545 -2.0094 6.3671 28 1 3.2524 -4.4323 6.3738 29 1 3.6247 -3.2402 4.2952 30 1 -0.3633 0.4796 0.9089 31 1 -0.3634 0.5473 -0.8698 32 1 -0.3633 -1.0269 -0.0390 33 1 1.3253 -0.7880 -2.0206 34 1 2.9968 -0.3225 -1.5780 35 1 0.5272 -2.8197 -2.7283 36 1 2.1677 -2.7753 -3.4175 37 1 -0.1888 -4.3110 -4.5315 38 1 1.4520 -4.2662 -5.2201 39 1 2.6391 -6.3477 -5.7627 40 1 2.3732 -8.7520 -6.3357 41 1 0.2688 -9.8990 -5.7683 42 1 -1.2915 -6.4350 -4.0973 43 1 3.9374 -1.6733 0.5691 44 1 2.7526 -2.8377 1.2375 45 1 0.2611 -0.4724 2.3614 46 1 0.3317 -2.0207 1.4858 47 1 2.3925 -1.9959 3.4167 48 1 0.6026 -4.0974 6.9866 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754826531.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:30 Heat of formation + Delta-G solvation = -44.942630 kcal Electronic energy + Delta-G solvation = -28241.839144 eV Core-core repulsion = 24296.581125 eV Total energy + Delta-G solvation = -3945.258020 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.35621 -41.10692 -39.53199 -38.32875 -36.54908 -34.28631 -33.94436 -33.15433 -32.73002 -31.17953 -29.48810 -27.78770 -26.93173 -26.48367 -24.56631 -24.45504 -23.24309 -23.00541 -20.62116 -20.46250 -19.40588 -18.51382 -17.98455 -17.82673 -17.53900 -17.36107 -16.81759 -16.56985 -16.53982 -15.97285 -15.79664 -15.15527 -15.01204 -14.78017 -14.71748 -14.56584 -14.46537 -14.04353 -13.96474 -13.94778 -13.40446 -13.29775 -13.18875 -13.06424 -12.91247 -12.75021 -12.63675 -12.34460 -12.19235 -11.88892 -11.70152 -11.61161 -11.26138 -10.95988 -10.94629 -10.81095 -10.78760 -10.42512 -10.07000 -9.74384 -9.31811 -8.07457 -5.40426 0.02299 0.29724 1.31595 1.37493 1.43645 1.54339 1.69181 2.44057 2.66095 3.11212 3.23468 3.38545 3.51086 3.55868 3.69399 3.79824 3.85466 3.88695 3.99087 4.03576 4.05594 4.14789 4.26347 4.30770 4.35379 4.40515 4.48002 4.55997 4.63218 4.69653 4.71992 4.79307 4.81498 4.88260 4.93088 4.94588 5.10625 5.13201 5.15878 5.25540 5.27390 5.41536 5.60192 5.70931 5.72342 6.02939 6.16887 6.55922 6.96873 7.03909 7.13436 7.80617 7.98716 9.14542 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.011669 B = 0.002594 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2398.860559 B =10791.377608 C =12145.931915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.088 4.088 3 H 0.124 0.876 4 C 0.101 3.899 5 N -0.619 5.619 6 C 0.517 3.483 7 O -0.589 6.589 8 C 0.059 3.941 9 O -0.398 6.398 10 C 0.105 3.895 11 C -0.155 4.155 12 C -0.062 4.062 13 C -0.174 4.174 14 C 0.087 3.913 15 N -0.521 5.521 16 C 0.098 3.902 17 C 0.104 3.896 18 C -0.104 4.104 19 H 0.103 0.897 20 C 0.165 3.835 21 N -0.759 5.759 22 C -0.235 4.235 23 H 0.052 0.948 24 C -0.067 4.067 25 N -0.985 5.985 26 Si 0.957 3.043 27 H -0.267 1.267 28 H -0.297 1.297 29 H -0.258 1.258 30 H 0.051 0.949 31 H 0.086 0.914 32 H 0.033 0.967 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.123 0.877 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.159 0.841 40 H 0.167 0.833 41 H 0.178 0.822 42 H 0.159 0.841 43 H 0.093 0.907 44 H 0.040 0.960 45 H 0.037 0.963 46 H 0.004 0.996 47 H 0.365 0.635 48 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 7.377 -33.150 34.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.108 4.108 3 H 0.142 0.858 4 C -0.020 4.020 5 N -0.353 5.353 6 C 0.307 3.693 7 O -0.469 6.469 8 C -0.020 4.020 9 O -0.318 6.318 10 C 0.029 3.971 11 C -0.157 4.157 12 C -0.088 4.088 13 C -0.193 4.193 14 C -0.070 4.070 15 N -0.230 5.230 16 C -0.058 4.058 17 C -0.019 4.019 18 C -0.124 4.124 19 H 0.121 0.879 20 C 0.040 3.960 21 N -0.405 5.405 22 C -0.366 4.366 23 H 0.070 0.930 24 C -0.258 4.258 25 N -0.636 5.636 26 Si 0.784 3.216 27 H -0.192 1.192 28 H -0.224 1.224 29 H -0.183 1.183 30 H 0.071 0.929 31 H 0.105 0.895 32 H 0.052 0.948 33 H 0.127 0.873 34 H 0.126 0.874 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.101 0.899 38 H 0.112 0.888 39 H 0.176 0.824 40 H 0.185 0.815 41 H 0.195 0.805 42 H 0.176 0.824 43 H 0.111 0.889 44 H 0.058 0.942 45 H 0.055 0.945 46 H 0.022 0.978 47 H 0.198 0.802 48 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 5.660 6.068 -32.562 33.602 hybrid contribution 1.195 -0.317 1.026 1.606 sum 6.855 5.751 -31.536 32.781 Atomic orbital electron populations 1.21930 0.94744 1.01118 1.02828 1.22143 0.96300 1.00432 0.91880 0.85799 1.22930 1.03084 0.78873 0.97063 1.48987 1.62614 1.06604 1.17144 1.20810 0.77944 0.81910 0.88623 1.90753 1.54072 1.33045 1.69000 1.22274 1.03089 0.85409 0.91216 1.88072 1.84914 1.25590 1.33221 1.21469 1.00266 0.91794 0.83548 1.20822 0.95982 0.97678 1.01223 1.21927 0.98150 0.94979 0.93710 1.22526 0.99727 0.95459 1.01616 1.23341 0.89258 1.01239 0.93115 1.67713 1.32955 1.09886 1.12465 1.22942 0.97616 0.90071 0.95170 1.22412 0.97959 0.98241 0.83274 1.22367 0.96579 0.96237 0.97171 0.87903 1.20947 0.95267 0.94103 0.85723 1.42801 1.04636 1.69359 1.23702 1.19016 0.90282 1.28018 0.99278 0.93043 1.25559 1.02617 1.00593 0.97038 1.69886 1.35624 1.44584 1.13463 0.85379 0.80534 0.77444 0.78278 1.19200 1.22422 1.18261 0.92950 0.89523 0.94829 0.87252 0.87399 0.87388 0.85971 0.89895 0.88842 0.82370 0.81515 0.80494 0.82372 0.88939 0.94158 0.94524 0.97792 0.80222 0.93301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 7.93 71.98 0.57 -2.11 16 2 C -0.09 -1.38 3.65 -9.89 -0.04 -1.42 16 3 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 4 C 0.10 1.24 6.47 86.53 0.56 1.80 16 5 N -0.62 -15.19 3.32 -807.94 -2.68 -17.87 16 6 C 0.52 15.53 7.99 87.66 0.70 16.23 16 7 O -0.59 -26.05 16.77 15.99 0.27 -25.79 16 8 C 0.06 1.06 5.40 71.23 0.38 1.44 16 9 O -0.40 -9.59 9.86 -129.94 -1.28 -10.87 16 10 C 0.11 1.52 6.09 71.24 0.43 1.95 16 11 C -0.16 -2.89 5.53 -19.77 -0.11 -3.00 16 12 C -0.06 -0.96 9.86 22.47 0.22 -0.73 16 13 C -0.17 -2.47 10.11 22.36 0.23 -2.25 16 14 C 0.09 1.55 11.18 84.69 0.95 2.50 16 15 N -0.52 -12.43 10.36 -195.84 -2.03 -14.46 16 16 C 0.10 2.17 10.86 84.67 0.92 3.09 16 17 C 0.10 3.05 6.44 86.53 0.56 3.61 16 18 C -0.10 -2.72 3.11 -9.89 -0.03 -2.75 16 19 H 0.10 2.41 8.14 -2.39 -0.02 2.39 16 20 C 0.17 6.38 4.41 86.38 0.38 6.76 16 21 N -0.76 -37.45 4.97 -343.43 -1.71 -39.16 16 22 C -0.23 -14.29 10.47 84.03 0.88 -13.41 16 23 H 0.05 3.43 8.06 -2.91 -0.02 3.41 16 24 C -0.07 -4.17 5.50 84.86 0.47 -3.71 16 25 N -0.98 -66.37 13.97 21.65 0.30 -66.07 16 26 Si 0.96 48.15 27.74 68.60 1.90 50.05 16 27 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 28 H -0.30 -15.23 7.11 99.48 0.71 -14.52 16 29 H -0.26 -12.00 6.52 99.48 0.65 -11.36 16 30 H 0.05 1.11 6.71 -2.38 -0.02 1.09 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.03 0.79 6.90 -2.39 -0.02 0.77 16 33 H 0.11 0.71 7.03 -2.39 -0.02 0.69 16 34 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.11 1.32 7.95 -2.39 -0.02 1.30 16 36 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.08 0.86 8.09 -2.38 -0.02 0.84 16 38 H 0.09 0.73 8.09 -2.39 -0.02 0.71 16 39 H 0.16 1.59 8.06 -2.91 -0.02 1.56 16 40 H 0.17 1.23 8.06 -2.91 -0.02 1.21 16 41 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 42 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 43 H 0.09 2.21 8.14 -2.39 -0.02 2.20 16 44 H 0.04 1.64 7.20 -2.39 -0.02 1.62 16 45 H 0.04 1.40 6.58 -2.39 -0.02 1.38 16 46 H 0.00 0.18 7.01 -2.39 -0.02 0.16 16 47 H 0.36 17.09 5.36 -92.71 -0.50 16.60 16 48 H 0.26 16.51 8.31 -92.71 -0.77 15.74 16 Total: -1.00 -95.48 391.08 2.25 -93.22 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: 0.40 Total: 22.92 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 7.07 Total: 8.02 kcal Atomic # 7 Polarization: -131.45 SS G_CDS: -6.11 Total: -137.56 kcal Atomic # 8 Polarization: -35.64 SS G_CDS: -1.01 Total: -36.65 kcal Atomic # 14 Polarization: 48.15 SS G_CDS: 1.90 Total: 50.05 kcal Total: -95.48 2.25 -93.22 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754826531.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.279 kcal (2) G-P(sol) polarization free energy of solvation -95.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -93.222 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds