Wall clock time and date at job start Tue Mar 31 2020 17:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.88548 * 2 1 4 4 C 1.55127 * 110.90579 * 124.09443 * 2 1 3 5 5 N 1.47425 * 104.71994 * 155.27717 * 4 2 1 6 6 C 1.34780 * 125.64666 * 155.82218 * 5 4 2 7 7 O 1.21281 * 119.99699 * 179.69156 * 6 5 4 8 8 C 1.50700 * 120.00301 * 359.68395 * 6 5 4 9 9 O 1.42899 * 109.47140 * 180.02562 * 8 6 5 10 10 C 1.42903 * 113.99629 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46878 * 179.97438 * 10 9 8 12 12 C 1.38674 * 120.41726 * 269.72217 * 11 10 9 13 13 C 1.38625 * 118.41626 * 179.78482 * 12 11 10 14 14 C 1.38232 * 119.16162 * 0.51000 * 13 12 11 15 15 N 1.31850 * 120.76294 * 359.72852 * 14 13 12 16 16 C 1.31883 * 121.72786 * 359.97438 * 15 14 13 17 17 C 1.47024 * 108.70559 * 335.55162 * 5 4 2 18 18 C 1.54330 * 107.26502 * 1.28805 * 17 5 4 19 19 H 1.09000 * 110.71920 * 263.64941 * 18 17 5 20 20 C 1.53008 * 110.71319 * 140.55836 * 18 17 5 21 21 N 1.46497 * 109.47511 * 66.45354 * 20 18 17 22 22 C 1.36932 * 120.00144 * 180.02562 * 21 20 18 23 23 H 1.07996 * 119.99989 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99937 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99837 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46715 * 89.99932 * 26 24 22 28 28 H 1.48490 * 109.47384 * 210.00072 * 26 24 22 29 29 H 1.48500 * 109.47166 * 330.00728 * 26 24 22 30 30 H 1.09004 * 109.46878 * 183.88286 * 1 2 3 31 31 H 1.09001 * 109.47057 * 303.87932 * 1 2 3 32 32 H 1.08994 * 109.47257 * 63.88147 * 1 2 3 33 33 H 1.08997 * 110.49787 * 36.43692 * 4 2 1 34 34 H 1.09001 * 110.34388 * 274.04143 * 4 2 1 35 35 H 1.09007 * 109.46405 * 60.00333 * 8 6 5 36 36 H 1.09004 * 109.47198 * 300.00818 * 8 6 5 37 37 H 1.09002 * 109.47382 * 59.99956 * 10 9 8 38 38 H 1.09001 * 109.46938 * 299.99942 * 10 9 8 39 39 H 1.07995 * 120.79070 * 0.02562 * 12 11 10 40 40 H 1.08004 * 120.42022 * 180.22040 * 13 12 11 41 41 H 1.08010 * 119.61582 * 179.74942 * 14 13 12 42 42 H 1.07999 * 119.61800 * 180.02562 * 16 15 14 43 43 H 1.08990 * 109.88231 * 120.70479 * 17 5 4 44 44 H 1.08996 * 109.88303 * 241.71901 * 17 5 4 45 45 H 1.08996 * 109.46524 * 186.45320 * 20 18 17 46 46 H 1.08998 * 109.46719 * 306.44953 * 20 18 17 47 47 H 0.97003 * 119.99865 * 359.97438 * 21 20 18 48 48 H 0.97003 * 119.99765 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4271 -1.2433 0.7728 6 6 4.4477 -1.5622 1.5935 7 8 5.5127 -1.9106 1.1295 8 6 4.2655 -1.4856 3.0874 9 8 5.4801 -1.8684 3.7357 10 6 5.4141 -1.8307 5.1627 11 6 6.7419 -2.2514 5.7381 12 6 6.9920 -3.5849 6.0248 13 6 8.2292 -3.9263 6.5488 14 6 9.1618 -2.9317 6.7766 15 7 8.8874 -1.6729 6.4965 16 6 7.7235 -1.3125 5.9917 17 6 3.4675 -1.2738 -0.6965 18 6 2.0861 -0.8074 -1.2025 19 1 1.4478 -1.6627 -1.4245 20 6 2.2350 0.0885 -2.4338 21 7 2.7615 -0.6998 -3.5507 22 6 2.9797 -0.1059 -4.7651 23 1 2.7633 0.9435 -4.8996 24 6 3.4791 -0.8528 -5.8232 25 7 3.7423 -2.1319 -5.6594 26 14 3.7762 -0.0428 -7.4801 27 1 5.1609 0.4917 -7.5285 28 1 3.5943 -1.0449 -8.5607 29 1 2.8097 1.0689 -7.6680 30 1 -0.3633 -1.0254 0.0696 31 1 -0.3633 0.5729 0.8532 32 1 -0.3633 0.4524 -0.9227 33 1 1.4524 -1.6786 1.3981 34 1 2.1515 -0.1809 2.0860 35 1 3.4636 -2.1589 3.3905 36 1 4.0091 -0.4646 3.3704 37 1 4.6365 -2.5116 5.5086 38 1 5.1811 -0.8171 5.4889 39 1 6.2423 -4.3401 5.8404 40 1 8.4597 -4.9556 6.7806 41 1 10.1266 -3.1889 7.1885 42 1 7.5352 -0.2714 5.7747 43 1 4.2426 -0.5993 -1.0601 44 1 3.6678 -2.2884 -1.0408 45 1 1.2619 0.4979 -2.7049 46 1 2.9223 0.9040 -2.2087 47 1 2.9562 -1.6424 -3.4298 48 1 4.0917 -2.6538 -6.3987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754826532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:34 Heat of formation + Delta-G solvation = -29.653763 kcal Electronic energy + Delta-G solvation = -27548.853780 eV Core-core repulsion = 23604.258735 eV Total energy + Delta-G solvation = -3944.595045 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.56417 -40.14418 -38.44476 -37.31596 -34.68001 -33.32014 -32.93097 -32.12284 -31.42863 -29.72102 -28.22731 -26.57472 -26.28763 -24.94588 -23.93750 -23.08121 -22.40230 -21.19142 -20.04569 -19.40552 -17.69552 -17.31449 -17.08404 -17.03175 -16.83723 -16.23482 -15.81656 -15.61352 -14.97673 -14.69493 -14.35121 -14.09777 -14.02462 -13.83415 -13.65166 -13.43004 -13.21624 -13.14128 -12.86346 -12.66010 -12.46272 -12.33316 -11.99342 -11.97191 -11.75427 -11.42629 -11.09663 -10.87162 -10.64930 -10.45840 -10.41114 -10.21718 -10.14253 -10.00205 -9.79905 -9.73552 -9.65980 -9.42616 -8.87083 -8.57210 -6.92211 -5.74961 -3.04315 0.65101 0.91703 2.60671 2.62210 3.36558 3.45418 3.50095 3.51931 3.77859 4.10306 4.29854 4.36830 4.43691 4.49891 4.57906 4.59061 4.62591 4.74092 4.77357 4.87205 4.91348 4.93001 4.98679 5.23832 5.27002 5.29190 5.39231 5.46018 5.46751 5.58894 5.67965 5.72233 5.76782 5.85397 5.96431 6.01733 6.12871 6.17810 6.29697 6.31215 6.37358 6.39661 6.68207 6.68609 6.82358 7.52805 7.60684 7.70901 8.20279 8.43277 9.54587 10.11214 10.45465 11.47733 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.002005 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.882948 B =13958.473314 C =15299.050359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.099 4.099 3 H 0.088 0.912 4 C 0.101 3.899 5 N -0.618 5.618 6 C 0.524 3.476 7 O -0.515 6.515 8 C 0.050 3.950 9 O -0.356 6.356 10 C 0.106 3.894 11 C -0.142 4.142 12 C -0.052 4.052 13 C -0.176 4.176 14 C 0.103 3.897 15 N -0.488 5.488 16 C 0.122 3.878 17 C 0.118 3.882 18 C -0.100 4.100 19 H 0.086 0.914 20 C 0.165 3.835 21 N -0.733 5.733 22 C -0.241 4.241 23 H 0.070 0.930 24 C -0.013 4.013 25 N -0.932 5.932 26 Si 0.907 3.093 27 H -0.290 1.290 28 H -0.292 1.292 29 H -0.282 1.282 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.066 0.934 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.079 0.921 36 H 0.080 0.920 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.157 0.843 42 H 0.157 0.843 43 H 0.077 0.923 44 H 0.071 0.929 45 H 0.024 0.976 46 H 0.021 0.979 47 H 0.384 0.616 48 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.711 -0.253 29.278 29.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.118 4.118 3 H 0.106 0.894 4 C -0.022 4.022 5 N -0.354 5.354 6 C 0.310 3.690 7 O -0.390 6.390 8 C -0.030 4.030 9 O -0.274 6.274 10 C 0.029 3.971 11 C -0.144 4.144 12 C -0.079 4.079 13 C -0.196 4.196 14 C -0.054 4.054 15 N -0.196 5.196 16 C -0.035 4.035 17 C -0.003 4.003 18 C -0.119 4.119 19 H 0.105 0.895 20 C 0.037 3.963 21 N -0.377 5.377 22 C -0.372 4.372 23 H 0.088 0.912 24 C -0.209 4.209 25 N -0.580 5.580 26 Si 0.738 3.262 27 H -0.217 1.217 28 H -0.218 1.218 29 H -0.208 1.208 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.091 0.909 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.174 0.826 42 H 0.174 0.826 43 H 0.095 0.905 44 H 0.089 0.911 45 H 0.042 0.958 46 H 0.038 0.962 47 H 0.218 0.782 48 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -1.223 0.229 29.007 29.034 hybrid contribution -0.665 -0.579 -0.989 1.325 sum -1.888 -0.350 28.019 28.084 Atomic orbital electron populations 1.21698 0.93639 1.02089 1.02282 1.22402 0.96229 0.99501 0.93685 0.89400 1.22525 0.83441 0.98298 0.97963 1.48491 1.11868 1.67280 1.07786 1.19771 0.83370 0.78251 0.87558 1.90779 1.25566 1.45559 1.77056 1.22195 0.88399 1.01081 0.91285 1.88117 1.32959 1.89033 1.17339 1.21261 0.93833 1.00783 0.81258 1.20559 0.97331 0.94821 1.01678 1.21545 0.96977 0.95530 0.93802 1.22174 0.94625 1.01335 1.01448 1.22861 0.99236 0.88126 0.95149 1.67746 1.20296 1.19925 1.11622 1.22724 0.87827 1.00057 0.92849 1.22062 0.98465 1.02572 0.77233 1.22529 0.95002 0.99260 0.95121 0.89535 1.20635 0.96693 0.92905 0.86093 1.42355 1.77852 1.09927 1.07569 1.19198 1.36055 0.94104 0.87890 0.91177 1.24755 1.02038 0.95822 0.98333 1.69658 1.50639 1.06051 1.31654 0.86187 0.77988 0.78046 0.83934 1.21691 1.21787 1.20785 0.92389 0.92651 0.91532 0.91083 0.90940 0.90272 0.90200 0.91898 0.91689 0.84608 0.84486 0.82584 0.82596 0.90489 0.91082 0.95777 0.96157 0.78222 0.93471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.31 37.16 0.35 -0.89 16 2 C -0.10 -1.07 3.10 -88.36 -0.27 -1.34 16 3 H 0.09 0.96 8.05 -51.93 -0.42 0.54 16 4 C 0.10 0.96 6.16 -2.41 -0.01 0.94 16 5 N -0.62 -8.51 3.32 -170.38 -0.57 -9.08 16 6 C 0.52 7.91 7.93 -10.98 -0.09 7.82 16 7 O -0.52 -10.58 16.83 -14.35 -0.24 -10.83 16 8 C 0.05 0.50 5.42 36.01 0.20 0.70 16 9 O -0.36 -4.30 9.86 -55.14 -0.54 -4.85 16 10 C 0.11 0.82 6.09 36.01 0.22 1.04 16 11 C -0.14 -1.29 5.53 -104.48 -0.58 -1.87 16 12 C -0.05 -0.43 9.86 -39.28 -0.39 -0.81 16 13 C -0.18 -1.30 10.11 -39.44 -0.40 -1.70 16 14 C 0.10 0.87 11.18 -17.55 -0.20 0.68 16 15 N -0.49 -5.24 10.36 -13.25 -0.14 -5.38 16 16 C 0.12 1.20 10.86 -17.55 -0.19 1.01 16 17 C 0.12 1.98 6.15 -3.06 -0.02 1.96 16 18 C -0.10 -1.50 2.48 -88.78 -0.22 -1.72 16 19 H 0.09 1.32 8.04 -51.93 -0.42 0.90 16 20 C 0.16 3.16 5.58 -4.04 -0.02 3.14 16 21 N -0.73 -18.36 5.45 -59.91 -0.33 -18.69 16 22 C -0.24 -6.77 9.99 -15.06 -0.15 -6.92 16 23 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 24 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 25 N -0.93 -28.54 13.06 55.49 0.72 -27.82 16 26 Si 0.91 22.67 29.55 -169.99 -5.02 17.64 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 29 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 30 H 0.06 0.49 8.07 -51.93 -0.42 0.07 16 31 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.58 7.99 -51.93 -0.41 0.17 16 34 H 0.07 0.49 7.48 -51.93 -0.39 0.10 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.58 7.85 -51.93 -0.41 0.17 16 37 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 38 H 0.06 0.37 8.09 -51.93 -0.42 -0.05 16 39 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 40 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.16 0.88 8.06 -52.48 -0.42 0.46 16 42 H 0.16 1.25 8.06 -52.49 -0.42 0.82 16 43 H 0.08 1.50 7.76 -51.93 -0.40 1.09 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 46 H 0.02 0.41 8.06 -51.93 -0.42 -0.01 16 47 H 0.38 10.18 7.52 -40.82 -0.31 9.87 16 48 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 401.10 15.07 6.04 6.04 Total: -1.00 -37.11 401.10 -9.73 -46.85 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -7.79 Total: 4.55 kcal Atomic # 6 Polarization: 3.43 SS G_CDS: -1.87 Total: 1.56 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: -0.31 Total: -60.96 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.79 Total: -15.67 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.11 -9.73 -46.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754826532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.191 kcal (2) G-P(sol) polarization free energy of solvation -37.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds