Wall clock time and date at job start Tue Mar 31 2020 17:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09006 * 110.88548 * 2 1 4 4 C 1.55127 * 110.90579 * 124.09443 * 2 1 3 5 5 N 1.47425 * 104.71994 * 155.27717 * 4 2 1 6 6 C 1.34780 * 125.64666 * 155.82218 * 5 4 2 7 7 O 1.21281 * 119.99699 * 179.69156 * 6 5 4 8 8 C 1.50700 * 120.00301 * 359.68395 * 6 5 4 9 9 O 1.42899 * 109.47140 * 180.02562 * 8 6 5 10 10 C 1.42903 * 113.99629 * 180.02562 * 9 8 6 11 11 C 1.50701 * 109.46878 * 179.97438 * 10 9 8 12 12 C 1.38674 * 120.41726 * 269.72217 * 11 10 9 13 13 C 1.38625 * 118.41626 * 179.78482 * 12 11 10 14 14 C 1.38232 * 119.16162 * 0.51000 * 13 12 11 15 15 N 1.31850 * 120.76294 * 359.72852 * 14 13 12 16 16 C 1.31883 * 121.72786 * 359.97438 * 15 14 13 17 17 C 1.47024 * 108.70559 * 335.55162 * 5 4 2 18 18 C 1.54330 * 107.26502 * 1.28805 * 17 5 4 19 19 H 1.09000 * 110.71920 * 263.64941 * 18 17 5 20 20 C 1.53008 * 110.71319 * 140.55836 * 18 17 5 21 21 N 1.46497 * 109.47511 * 66.45354 * 20 18 17 22 22 C 1.36932 * 120.00144 * 180.02562 * 21 20 18 23 23 H 1.07996 * 119.99989 * 359.97438 * 22 21 20 24 24 C 1.38813 * 119.99937 * 179.97438 * 22 21 20 25 25 N 1.31614 * 119.99837 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48507 * 109.46715 * 89.99932 * 26 24 22 28 28 H 1.48490 * 109.47384 * 210.00072 * 26 24 22 29 29 H 1.48500 * 109.47166 * 330.00728 * 26 24 22 30 30 H 1.09004 * 109.46878 * 183.88286 * 1 2 3 31 31 H 1.09001 * 109.47057 * 303.87932 * 1 2 3 32 32 H 1.08994 * 109.47257 * 63.88147 * 1 2 3 33 33 H 1.08997 * 110.49787 * 36.43692 * 4 2 1 34 34 H 1.09001 * 110.34388 * 274.04143 * 4 2 1 35 35 H 1.09007 * 109.46405 * 60.00333 * 8 6 5 36 36 H 1.09004 * 109.47198 * 300.00818 * 8 6 5 37 37 H 1.09002 * 109.47382 * 59.99956 * 10 9 8 38 38 H 1.09001 * 109.46938 * 299.99942 * 10 9 8 39 39 H 1.07995 * 120.79070 * 0.02562 * 12 11 10 40 40 H 1.08004 * 120.42022 * 180.22040 * 13 12 11 41 41 H 1.08010 * 119.61582 * 179.74942 * 14 13 12 42 42 H 1.07999 * 119.61800 * 180.02562 * 16 15 14 43 43 H 1.08990 * 109.88231 * 120.70479 * 17 5 4 44 44 H 1.08996 * 109.88303 * 241.71901 * 17 5 4 45 45 H 1.08996 * 109.46524 * 186.45320 * 20 18 17 46 46 H 1.08998 * 109.46719 * 306.44953 * 20 18 17 47 47 H 0.97003 * 119.99865 * 359.97438 * 21 20 18 48 48 H 0.97003 * 119.99765 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9186 1.0184 0.0000 4 6 2.0836 -0.8123 1.2001 5 7 3.4271 -1.2433 0.7728 6 6 4.4477 -1.5622 1.5935 7 8 5.5127 -1.9106 1.1295 8 6 4.2655 -1.4856 3.0874 9 8 5.4801 -1.8684 3.7357 10 6 5.4141 -1.8307 5.1627 11 6 6.7419 -2.2514 5.7381 12 6 6.9920 -3.5849 6.0248 13 6 8.2292 -3.9263 6.5488 14 6 9.1618 -2.9317 6.7766 15 7 8.8874 -1.6729 6.4965 16 6 7.7235 -1.3125 5.9917 17 6 3.4675 -1.2738 -0.6965 18 6 2.0861 -0.8074 -1.2025 19 1 1.4478 -1.6627 -1.4245 20 6 2.2350 0.0885 -2.4338 21 7 2.7615 -0.6998 -3.5507 22 6 2.9797 -0.1059 -4.7651 23 1 2.7633 0.9435 -4.8996 24 6 3.4791 -0.8528 -5.8232 25 7 3.7423 -2.1319 -5.6594 26 14 3.7762 -0.0428 -7.4801 27 1 5.1609 0.4917 -7.5285 28 1 3.5943 -1.0449 -8.5607 29 1 2.8097 1.0689 -7.6680 30 1 -0.3633 -1.0254 0.0696 31 1 -0.3633 0.5729 0.8532 32 1 -0.3633 0.4524 -0.9227 33 1 1.4524 -1.6786 1.3981 34 1 2.1515 -0.1809 2.0860 35 1 3.4636 -2.1589 3.3905 36 1 4.0091 -0.4646 3.3704 37 1 4.6365 -2.5116 5.5086 38 1 5.1811 -0.8171 5.4889 39 1 6.2423 -4.3401 5.8404 40 1 8.4597 -4.9556 6.7806 41 1 10.1266 -3.1889 7.1885 42 1 7.5352 -0.2714 5.7747 43 1 4.2426 -0.5993 -1.0601 44 1 3.6678 -2.2884 -1.0408 45 1 1.2619 0.4979 -2.7049 46 1 2.9223 0.9040 -2.2087 47 1 2.9562 -1.6424 -3.4298 48 1 4.0917 -2.6538 -6.3987 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754826532.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:46:33 Heat of formation + Delta-G solvation = -55.328331 kcal Electronic energy + Delta-G solvation = -27549.967112 eV Core-core repulsion = 23604.258735 eV Total energy + Delta-G solvation = -3945.708377 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.34146 -41.08614 -39.42585 -38.31571 -36.47207 -34.30433 -33.92869 -33.04972 -32.72018 -31.08630 -29.33084 -27.37581 -27.19413 -26.37021 -24.81827 -24.55276 -22.99725 -22.45761 -21.18924 -20.50608 -19.18436 -18.41816 -17.97055 -17.83156 -17.67308 -17.13837 -16.80851 -16.64409 -16.35856 -15.86154 -15.43636 -15.35327 -15.17236 -14.98535 -14.75738 -14.53665 -14.15001 -14.05904 -13.99805 -13.58561 -13.42981 -13.24842 -13.22668 -13.04517 -12.86339 -12.77935 -12.46111 -12.33442 -12.15336 -11.95820 -11.85365 -11.55357 -11.33928 -10.99408 -10.94270 -10.79931 -10.78213 -10.41857 -10.05682 -9.74640 -9.02171 -7.96831 -5.26047 0.03457 0.30542 1.44989 1.47694 1.51418 1.55800 1.65845 2.54248 2.66262 3.10981 3.35065 3.39611 3.49877 3.55510 3.72010 3.77779 3.87003 3.90065 4.04660 4.06640 4.14815 4.16933 4.25077 4.30496 4.42265 4.43911 4.49441 4.52804 4.57455 4.67777 4.70414 4.80433 4.83110 4.87557 4.93159 5.03576 5.14525 5.15011 5.20261 5.26903 5.27168 5.39761 5.47420 5.57124 5.73208 6.02669 6.25076 6.48959 6.97544 7.09007 7.31096 8.07290 8.29009 9.26811 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.015067 B = 0.002005 C = 0.001830 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.882948 B =13958.473314 C =15299.050359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 H 0.089 0.911 4 C 0.100 3.900 5 N -0.615 5.615 6 C 0.512 3.488 7 O -0.588 6.588 8 C 0.060 3.940 9 O -0.398 6.398 10 C 0.105 3.895 11 C -0.155 4.155 12 C -0.064 4.064 13 C -0.175 4.175 14 C 0.088 3.912 15 N -0.520 5.520 16 C 0.101 3.899 17 C 0.123 3.877 18 C -0.090 4.090 19 H 0.086 0.914 20 C 0.163 3.837 21 N -0.747 5.747 22 C -0.245 4.245 23 H 0.078 0.922 24 C -0.080 4.080 25 N -0.971 5.971 26 Si 0.975 3.025 27 H -0.290 1.290 28 H -0.295 1.295 29 H -0.265 1.265 30 H 0.064 0.936 31 H 0.085 0.915 32 H 0.052 0.948 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.118 0.882 36 H 0.118 0.882 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.155 0.845 40 H 0.165 0.835 41 H 0.178 0.822 42 H 0.164 0.836 43 H 0.038 0.962 44 H 0.039 0.961 45 H 0.036 0.964 46 H 0.015 0.985 47 H 0.372 0.628 48 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.230 0.642 31.815 32.249 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.108 4.108 3 H 0.107 0.893 4 C -0.021 4.021 5 N -0.349 5.349 6 C 0.302 3.698 7 O -0.467 6.467 8 C -0.019 4.019 9 O -0.317 6.317 10 C 0.029 3.971 11 C -0.157 4.157 12 C -0.090 4.090 13 C -0.195 4.195 14 C -0.069 4.069 15 N -0.229 5.229 16 C -0.055 4.055 17 C 0.000 4.000 18 C -0.109 4.109 19 H 0.104 0.896 20 C 0.037 3.963 21 N -0.390 5.390 22 C -0.376 4.376 23 H 0.096 0.904 24 C -0.272 4.272 25 N -0.622 5.622 26 Si 0.804 3.196 27 H -0.218 1.218 28 H -0.221 1.221 29 H -0.190 1.190 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.071 0.929 33 H 0.113 0.887 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.135 0.865 37 H 0.108 0.892 38 H 0.106 0.894 39 H 0.173 0.827 40 H 0.182 0.818 41 H 0.195 0.805 42 H 0.181 0.819 43 H 0.057 0.943 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.033 0.967 47 H 0.204 0.796 48 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.817 1.183 31.598 31.850 hybrid contribution 0.132 -0.845 -1.716 1.918 sum -3.685 0.339 29.881 30.110 Atomic orbital electron populations 1.21681 0.91511 1.03021 1.02991 1.22419 0.97804 0.98955 0.91626 0.89253 1.22887 0.80868 0.99757 0.98580 1.48581 1.13674 1.66552 1.06102 1.20964 0.82283 0.76552 0.90031 1.90741 1.28480 1.48869 1.78657 1.22285 0.88697 1.04192 0.86688 1.88065 1.34406 1.89584 1.19687 1.21476 0.93676 1.02885 0.79069 1.20824 0.98010 0.95153 1.01695 1.21925 0.97782 0.95769 0.93488 1.22514 0.94117 1.02455 1.00365 1.23321 1.00538 0.87832 0.95179 1.67720 1.21098 1.21333 1.12781 1.22971 0.88143 1.00909 0.93525 1.21728 0.98508 0.99713 0.80068 1.22381 0.94117 0.99241 0.95180 0.89586 1.20804 0.96329 0.93008 0.86161 1.42611 1.78083 1.09849 1.08440 1.19652 1.34528 0.94475 0.88982 0.90404 1.25627 1.02877 0.96486 1.02185 1.69828 1.52372 1.07566 1.32415 0.85114 0.77867 0.77328 0.79305 1.21776 1.22137 1.18955 0.91724 0.89583 0.92868 0.88654 0.86512 0.86409 0.86459 0.89227 0.89414 0.82706 0.81754 0.80511 0.81913 0.94323 0.94294 0.94594 0.96684 0.79625 0.94068 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 9.31 71.98 0.67 -1.18 16 2 C -0.09 -1.65 3.10 -9.33 -0.03 -1.68 16 3 H 0.09 1.68 8.05 -2.38 -0.02 1.66 16 4 C 0.10 1.48 6.16 86.93 0.54 2.01 16 5 N -0.61 -16.30 3.32 -811.35 -2.70 -19.00 16 6 C 0.51 15.18 7.93 87.66 0.69 15.87 16 7 O -0.59 -25.42 16.83 16.00 0.27 -25.15 16 8 C 0.06 1.00 5.42 71.24 0.39 1.39 16 9 O -0.40 -8.89 9.86 -129.94 -1.28 -10.18 16 10 C 0.10 1.35 6.09 71.24 0.43 1.78 16 11 C -0.15 -2.64 5.53 -19.77 -0.11 -2.75 16 12 C -0.06 -0.94 9.86 22.47 0.22 -0.72 16 13 C -0.18 -2.36 10.11 22.36 0.23 -2.13 16 14 C 0.09 1.44 11.18 84.69 0.95 2.39 16 15 N -0.52 -11.31 10.36 -195.84 -2.03 -13.34 16 16 C 0.10 1.98 10.86 84.67 0.92 2.90 16 17 C 0.12 4.34 6.15 86.73 0.53 4.87 16 18 C -0.09 -2.68 2.48 -9.60 -0.02 -2.71 16 19 H 0.09 2.60 8.04 -2.39 -0.02 2.58 16 20 C 0.16 6.34 5.58 86.38 0.48 6.83 16 21 N -0.75 -38.68 5.45 -343.46 -1.87 -40.55 16 22 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 23 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 24 C -0.08 -4.72 5.50 84.86 0.47 -4.25 16 25 N -0.97 -61.54 13.06 21.65 0.28 -61.25 16 26 Si 0.98 47.37 29.55 68.60 2.03 49.39 16 27 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 28 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 29 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 30 H 0.06 0.83 8.07 -2.39 -0.02 0.81 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.10 1.05 7.99 -2.39 -0.02 1.03 16 34 H 0.12 0.81 7.48 -2.39 -0.02 0.80 16 35 H 0.12 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.12 1.08 7.85 -2.38 -0.02 1.06 16 37 H 0.09 0.64 8.09 -2.39 -0.02 0.63 16 38 H 0.09 0.69 8.09 -2.39 -0.02 0.67 16 39 H 0.16 1.57 8.06 -2.91 -0.02 1.55 16 40 H 0.16 1.17 8.06 -2.91 -0.02 1.15 16 41 H 0.18 1.88 8.06 -2.91 -0.02 1.85 16 42 H 0.16 2.65 8.06 -2.91 -0.02 2.62 16 43 H 0.04 1.63 7.76 -2.39 -0.02 1.61 16 44 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 45 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 46 H 0.02 0.61 8.06 -2.39 -0.02 0.59 16 47 H 0.37 20.76 7.52 -92.71 -0.70 20.06 16 48 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 Total: -1.00 -87.96 401.10 2.14 -85.82 By element: Atomic # 1 Polarization: 24.50 SS G_CDS: 0.25 Total: 24.75 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 7.19 Total: 9.51 kcal Atomic # 7 Polarization: -127.83 SS G_CDS: -6.31 Total: -134.14 kcal Atomic # 8 Polarization: -34.31 SS G_CDS: -1.01 Total: -35.33 kcal Atomic # 14 Polarization: 47.37 SS G_CDS: 2.03 Total: 49.39 kcal Total: -87.96 2.14 -85.82 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754826532.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.488 kcal (2) G-P(sol) polarization free energy of solvation -87.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds