Wall clock time and date at job start Tue Mar 31 2020 18:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47017 * 2 1 4 4 N 1.46495 * 109.47155 * 239.99833 * 2 1 3 5 5 C 1.36937 * 119.99993 * 85.00247 * 4 2 1 6 6 H 1.07998 * 119.99898 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00342 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99922 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00404 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47171 * 89.99836 * 9 7 5 11 11 H 1.48500 * 109.47308 * 210.00001 * 9 7 5 12 12 H 1.48509 * 109.47085 * 330.00136 * 9 7 5 13 13 C 1.50697 * 109.46663 * 119.99965 * 2 1 3 14 14 C 1.38229 * 120.00264 * 259.99557 * 13 2 1 15 15 C 1.38234 * 120.00615 * 180.02562 * 14 13 2 16 16 C 1.38239 * 119.99681 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00049 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46928 * 90.00117 * 17 16 15 19 19 C 1.34777 * 119.99873 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99754 * 359.97438 * 19 18 17 21 21 C 1.50696 * 120.00137 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.46910 * 299.99848 * 21 19 18 23 23 C 1.53002 * 109.46999 * 59.99467 * 21 19 18 24 24 C 1.50699 * 109.47192 * 179.97438 * 21 19 18 25 25 N 1.34777 * 119.99614 * 180.02562 * 24 21 19 26 26 O 1.21282 * 120.00041 * 0.02562 * 24 21 19 27 27 C 1.38236 * 119.99618 * 0.24824 * 16 15 14 28 28 C 1.38236 * 120.00319 * 359.47615 * 27 16 15 29 29 H 1.09002 * 109.46967 * 60.00319 * 1 2 3 30 30 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47655 * 300.00136 * 1 2 3 32 32 H 0.97005 * 120.00570 * 265.00312 * 4 2 1 33 33 H 0.96997 * 120.00486 * 180.02562 * 8 7 5 34 34 H 1.08006 * 120.00063 * 359.97438 * 14 13 2 35 35 H 1.07993 * 120.00649 * 179.97438 * 15 14 13 36 36 H 1.09000 * 109.47247 * 330.00049 * 17 16 15 37 37 H 1.09001 * 109.47358 * 209.99475 * 17 16 15 38 38 H 0.96995 * 120.00050 * 359.72380 * 18 17 16 39 39 H 1.08998 * 109.47624 * 60.00174 * 22 21 19 40 40 H 1.09002 * 109.47045 * 179.97438 * 22 21 19 41 41 H 1.09000 * 109.47140 * 299.99705 * 22 21 19 42 42 H 1.09001 * 109.47248 * 60.00702 * 23 21 19 43 43 H 1.09002 * 109.46838 * 179.97438 * 23 21 19 44 44 H 1.09001 * 109.47142 * 300.00189 * 23 21 19 45 45 H 0.96996 * 120.00269 * 359.97438 * 25 24 21 46 46 H 0.97010 * 119.99793 * 180.02562 * 25 24 21 47 47 H 1.08004 * 119.99728 * 179.72715 * 27 16 15 48 48 H 1.07997 * 119.99730 * 180.27141 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6124 -0.6617 -3.5090 8 7 2.9254 -1.9388 -3.4499 9 14 2.7902 0.2699 -5.1183 10 1 4.1520 0.8560 -5.2031 11 1 2.5805 -0.6618 -6.2554 12 1 1.7793 1.3564 -5.1756 13 6 2.0322 -0.7104 1.2305 14 6 2.4587 0.0193 2.3243 15 6 2.9198 -0.6322 3.4528 16 6 2.9551 -2.0137 3.4873 17 6 3.4584 -2.7242 4.7174 18 7 2.3392 -2.9743 5.6291 19 6 2.5532 -3.6020 6.8024 20 8 3.6722 -3.9602 7.1032 21 6 1.4021 -3.8588 7.7405 22 6 0.7666 -2.5269 8.1444 23 6 0.3579 -4.7304 7.0399 24 6 1.9054 -4.5693 8.9705 25 7 1.0469 -4.9038 9.9541 26 8 3.0830 -4.8400 9.0753 27 6 2.5340 -2.7434 2.3914 28 6 2.0674 -2.0919 1.2650 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6318 -1.1526 33 1 3.2494 -2.3959 -4.2417 34 1 2.4323 1.0987 2.2969 35 1 3.2534 -0.0621 4.3072 36 1 4.2021 -2.1033 5.2168 37 1 3.9113 -3.6729 4.4294 38 1 1.4450 -2.6842 5.3903 39 1 0.4025 -2.0134 7.2547 40 1 -0.0663 -2.7127 8.8226 41 1 1.5105 -1.9059 8.6436 42 1 0.8107 -5.6793 6.7522 43 1 -0.4744 -4.9165 7.7187 44 1 -0.0061 -4.2168 6.1501 45 1 0.1052 -4.6869 9.8705 46 1 1.3709 -5.3609 10.7461 47 1 2.5656 -3.8227 2.4167 48 1 1.7343 -2.6621 0.4105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754947057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:08 Heat of formation + Delta-G solvation = -46.652832 kcal Electronic energy + Delta-G solvation = -27996.957693 eV Core-core repulsion = 24051.625513 eV Total energy + Delta-G solvation = -3945.332180 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.02751 -39.49076 -38.58977 -35.95020 -35.51660 -34.36168 -33.43299 -32.27800 -30.72971 -30.20726 -28.35150 -27.98551 -26.13788 -24.66936 -23.91132 -22.65896 -22.11117 -21.45052 -19.92913 -19.64569 -18.33592 -17.45583 -17.00942 -16.57017 -15.83471 -15.77563 -15.55308 -15.23706 -14.80166 -14.58807 -14.42992 -14.27955 -14.09914 -13.44098 -13.41782 -13.22669 -13.04206 -12.96818 -12.78436 -12.76586 -12.63463 -12.36966 -12.30738 -11.94636 -11.75602 -11.53905 -11.23923 -10.92957 -10.85691 -10.64238 -10.32969 -10.29665 -10.01702 -9.98932 -9.70312 -9.55492 -9.17272 -8.99718 -8.65684 -8.32794 -7.02071 -5.80621 -3.09541 1.45024 1.67066 2.29510 2.55938 2.80029 3.27675 3.41444 3.46498 3.48151 4.01421 4.18121 4.23444 4.42717 4.56291 4.57640 4.74413 4.92975 4.99470 5.10672 5.12547 5.13907 5.21073 5.30546 5.39196 5.50336 5.54212 5.57176 5.66652 5.71010 5.76464 5.95132 6.00024 6.23226 6.25875 6.29670 6.33466 6.43333 6.47527 6.59722 6.70019 6.76097 6.92448 6.93315 7.13862 7.25819 7.34940 7.66500 7.94255 8.14372 8.37616 9.48983 10.04477 10.39509 11.41961 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.001964 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.401561 B =14256.399162 C =14468.328332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.240 4.240 6 H 0.071 0.929 7 C -0.013 4.013 8 N -0.932 5.932 9 Si 0.908 3.092 10 H -0.290 1.290 11 H -0.291 1.291 12 H -0.282 1.282 13 C -0.053 4.053 14 C -0.122 4.122 15 C -0.102 4.102 16 C -0.129 4.129 17 C 0.168 3.832 18 N -0.723 5.723 19 C 0.518 3.482 20 O -0.497 6.497 21 C -0.105 4.105 22 C -0.140 4.140 23 C -0.140 4.140 24 C 0.525 3.475 25 N -0.857 5.857 26 O -0.495 6.495 27 C -0.099 4.099 28 C -0.106 4.106 29 H 0.057 0.943 30 H 0.047 0.953 31 H 0.037 0.963 32 H 0.385 0.615 33 H 0.256 0.744 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.399 0.601 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.067 0.933 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.076 0.924 45 H 0.398 0.602 46 H 0.403 0.597 47 H 0.119 0.881 48 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.917 -2.611 26.049 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.371 4.371 6 H 0.089 0.911 7 C -0.209 4.209 8 N -0.580 5.580 9 Si 0.739 3.261 10 H -0.217 1.217 11 H -0.218 1.218 12 H -0.207 1.207 13 C -0.055 4.055 14 C -0.140 4.140 15 C -0.121 4.121 16 C -0.130 4.130 17 C 0.045 3.955 18 N -0.377 5.377 19 C 0.301 3.699 20 O -0.369 6.369 21 C -0.112 4.112 22 C -0.197 4.197 23 C -0.198 4.198 24 C 0.306 3.694 25 N -0.423 5.423 26 O -0.366 6.366 27 C -0.117 4.117 28 C -0.124 4.124 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.056 0.944 32 H 0.220 0.780 33 H 0.066 0.934 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.234 0.766 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.091 0.909 44 H 0.095 0.905 45 H 0.227 0.773 46 H 0.234 0.766 47 H 0.137 0.863 48 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.210 -2.869 25.991 27.407 hybrid contribution -0.638 0.227 -0.866 1.099 sum -8.848 -2.642 25.125 26.768 Atomic orbital electron populations 1.22419 0.98272 1.01110 1.00120 1.19248 0.92137 0.95009 0.84234 0.92645 1.42524 1.78214 1.10707 1.04913 1.19236 1.36761 0.93998 0.87129 0.91071 1.24749 1.01997 0.96009 0.98132 1.69653 1.50650 1.08657 1.29021 0.86183 0.77817 0.78584 0.83549 1.21704 1.21769 1.20740 1.20527 0.95302 0.94055 0.95570 1.21012 1.00060 0.99776 0.93168 1.20925 0.99619 0.93509 0.98042 1.19649 1.04029 0.93828 0.95466 1.20138 0.88278 0.99953 0.87094 1.46081 1.12095 1.60538 1.18947 1.19832 0.89572 0.78617 0.81844 1.90862 1.23524 1.48698 1.73792 1.20900 0.96765 0.98698 0.94793 1.21860 1.00972 0.93868 1.03035 1.21868 0.96988 0.99808 1.01127 1.19894 0.86288 0.79173 0.84003 1.43822 1.11957 1.64042 1.22500 1.90910 1.15881 1.51490 1.78325 1.21023 0.98241 0.99503 0.92966 1.21088 0.99151 0.94428 0.97739 0.92406 0.93339 0.94357 0.77986 0.93442 0.86159 0.86500 0.90869 0.90756 0.76600 0.90527 0.90889 0.91344 0.91289 0.90890 0.90484 0.77340 0.76620 0.86331 0.85403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.47 37.16 0.35 -2.40 16 2 C 0.20 3.93 3.09 -69.08 -0.21 3.71 16 3 H 0.06 1.08 7.94 -51.93 -0.41 0.67 16 4 N -0.72 -17.60 5.07 -54.56 -0.28 -17.87 16 5 C -0.24 -6.53 9.93 -15.06 -0.15 -6.68 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.75 13.06 55.49 0.72 -27.03 16 9 Si 0.91 22.13 29.55 -169.99 -5.02 17.11 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C -0.05 -0.89 4.95 -104.63 -0.52 -1.41 16 14 C -0.12 -1.72 9.67 -39.59 -0.38 -2.10 16 15 C -0.10 -1.26 9.70 -39.58 -0.38 -1.65 16 16 C -0.13 -1.58 5.25 -104.62 -0.55 -2.13 16 17 C 0.17 1.91 5.80 -5.19 -0.03 1.88 16 18 N -0.72 -6.97 5.33 -61.47 -0.33 -7.30 16 19 C 0.52 6.03 6.47 -10.99 -0.07 5.96 16 20 O -0.50 -8.38 14.18 -18.96 -0.27 -8.65 16 21 C -0.10 -0.80 0.72 -156.82 -0.11 -0.91 16 22 C -0.14 -0.67 8.27 37.16 0.31 -0.36 16 23 C -0.14 -0.71 8.27 37.16 0.31 -0.40 16 24 C 0.52 5.12 6.75 -10.99 -0.07 5.05 16 25 N -0.86 -4.11 8.66 31.22 0.27 -3.84 16 26 O -0.49 -7.75 15.02 -18.96 -0.28 -8.04 16 27 C -0.10 -1.34 9.70 -39.58 -0.38 -1.73 16 28 C -0.11 -1.71 9.06 -39.58 -0.36 -2.07 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.38 9.91 6.06 -40.82 -0.25 9.66 16 33 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 34 H 0.12 1.52 8.04 -52.48 -0.42 1.09 16 35 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.07 0.87 8.09 -51.93 -0.42 0.45 16 37 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 38 H 0.40 2.95 7.30 -40.82 -0.30 2.65 16 39 H 0.08 0.28 7.56 -51.93 -0.39 -0.11 16 40 H 0.07 0.16 7.57 -51.93 -0.39 -0.23 16 41 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.18 7.56 -51.93 -0.39 -0.21 16 44 H 0.08 0.31 7.57 -51.93 -0.39 -0.08 16 45 H 0.40 0.58 7.66 -40.82 -0.31 0.27 16 46 H 0.40 1.65 8.93 -40.82 -0.36 1.29 16 47 H 0.12 1.44 8.06 -52.48 -0.42 1.01 16 48 H 0.13 2.24 6.92 -52.49 -0.36 1.88 16 LS Contribution 397.02 15.07 5.98 5.98 Total: -1.00 -36.79 397.02 -8.90 -45.69 By element: Atomic # 1 Polarization: 16.98 SS G_CDS: -7.34 Total: 9.64 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.36 Total: -5.69 kcal Atomic # 7 Polarization: -56.43 SS G_CDS: 0.39 Total: -56.04 kcal Atomic # 8 Polarization: -16.14 SS G_CDS: -0.55 Total: -16.69 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.79 -8.90 -45.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.962 kcal (2) G-P(sol) polarization free energy of solvation -36.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.756 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds