Wall clock time and date at job start Tue Mar 31 2020 18:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47017 * 2 1 4 4 N 1.46495 * 109.47155 * 239.99833 * 2 1 3 5 5 C 1.36937 * 119.99993 * 85.00247 * 4 2 1 6 6 H 1.07998 * 119.99898 * 359.97438 * 5 4 2 7 7 C 1.38814 * 120.00342 * 179.97438 * 5 4 2 8 8 N 1.31619 * 119.99922 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 120.00404 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47171 * 89.99836 * 9 7 5 11 11 H 1.48500 * 109.47308 * 210.00001 * 9 7 5 12 12 H 1.48509 * 109.47085 * 330.00136 * 9 7 5 13 13 C 1.50697 * 109.46663 * 119.99965 * 2 1 3 14 14 C 1.38229 * 120.00264 * 259.99557 * 13 2 1 15 15 C 1.38234 * 120.00615 * 180.02562 * 14 13 2 16 16 C 1.38239 * 119.99681 * 0.02562 * 15 14 13 17 17 C 1.50699 * 120.00049 * 179.97438 * 16 15 14 18 18 N 1.46506 * 109.46928 * 90.00117 * 17 16 15 19 19 C 1.34777 * 119.99873 * 180.02562 * 18 17 16 20 20 O 1.21284 * 119.99754 * 359.97438 * 19 18 17 21 21 C 1.50696 * 120.00137 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.46910 * 299.99848 * 21 19 18 23 23 C 1.53002 * 109.46999 * 59.99467 * 21 19 18 24 24 C 1.50699 * 109.47192 * 179.97438 * 21 19 18 25 25 N 1.34777 * 119.99614 * 180.02562 * 24 21 19 26 26 O 1.21282 * 120.00041 * 0.02562 * 24 21 19 27 27 C 1.38236 * 119.99618 * 0.24824 * 16 15 14 28 28 C 1.38236 * 120.00319 * 359.47615 * 27 16 15 29 29 H 1.09002 * 109.46967 * 60.00319 * 1 2 3 30 30 H 1.09002 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47655 * 300.00136 * 1 2 3 32 32 H 0.97005 * 120.00570 * 265.00312 * 4 2 1 33 33 H 0.96997 * 120.00486 * 180.02562 * 8 7 5 34 34 H 1.08006 * 120.00063 * 359.97438 * 14 13 2 35 35 H 1.07993 * 120.00649 * 179.97438 * 15 14 13 36 36 H 1.09000 * 109.47247 * 330.00049 * 17 16 15 37 37 H 1.09001 * 109.47358 * 209.99475 * 17 16 15 38 38 H 0.96995 * 120.00050 * 359.72380 * 18 17 16 39 39 H 1.08998 * 109.47624 * 60.00174 * 22 21 19 40 40 H 1.09002 * 109.47045 * 179.97438 * 22 21 19 41 41 H 1.09000 * 109.47140 * 299.99705 * 22 21 19 42 42 H 1.09001 * 109.47248 * 60.00702 * 23 21 19 43 43 H 1.09002 * 109.46838 * 179.97438 * 23 21 19 44 44 H 1.09001 * 109.47142 * 300.00189 * 23 21 19 45 45 H 0.96996 * 120.00269 * 359.97438 * 25 24 21 46 46 H 0.97010 * 119.99793 * 180.02562 * 25 24 21 47 47 H 1.08004 * 119.99728 * 179.72715 * 27 16 15 48 48 H 1.07997 * 119.99730 * 180.27141 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4243 7 6 2.6124 -0.6617 -3.5090 8 7 2.9254 -1.9388 -3.4499 9 14 2.7902 0.2699 -5.1183 10 1 4.1520 0.8560 -5.2031 11 1 2.5805 -0.6618 -6.2554 12 1 1.7793 1.3564 -5.1756 13 6 2.0322 -0.7104 1.2305 14 6 2.4587 0.0193 2.3243 15 6 2.9198 -0.6322 3.4528 16 6 2.9551 -2.0137 3.4873 17 6 3.4584 -2.7242 4.7174 18 7 2.3392 -2.9743 5.6291 19 6 2.5532 -3.6020 6.8024 20 8 3.6722 -3.9602 7.1032 21 6 1.4021 -3.8588 7.7405 22 6 0.7666 -2.5269 8.1444 23 6 0.3579 -4.7304 7.0399 24 6 1.9054 -4.5693 8.9705 25 7 1.0469 -4.9038 9.9541 26 8 3.0830 -4.8400 9.0753 27 6 2.5340 -2.7434 2.3914 28 6 2.0674 -2.0919 1.2650 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 2.2490 -1.6318 -1.1526 33 1 3.2494 -2.3959 -4.2417 34 1 2.4323 1.0987 2.2969 35 1 3.2534 -0.0621 4.3072 36 1 4.2021 -2.1033 5.2168 37 1 3.9113 -3.6729 4.4294 38 1 1.4450 -2.6842 5.3903 39 1 0.4025 -2.0134 7.2547 40 1 -0.0663 -2.7127 8.8226 41 1 1.5105 -1.9059 8.6436 42 1 0.8107 -5.6793 6.7522 43 1 -0.4744 -4.9165 7.7187 44 1 -0.0061 -4.2168 6.1501 45 1 0.1052 -4.6869 9.8705 46 1 1.3709 -5.3609 10.7461 47 1 2.5656 -3.8227 2.4167 48 1 1.7343 -2.6621 0.4105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754947057.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:07 Heat of formation + Delta-G solvation = -73.629174 kcal Electronic energy + Delta-G solvation = -27998.127475 eV Core-core repulsion = 24051.625513 eV Total energy + Delta-G solvation = -3946.501962 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.81319 -40.60070 -39.51684 -37.39548 -36.29419 -35.54182 -34.18126 -33.86569 -31.89687 -31.55398 -29.98465 -28.34864 -27.22771 -25.86047 -25.23338 -23.83492 -23.18986 -22.47867 -21.12503 -20.55028 -19.38578 -18.97555 -17.74323 -17.45690 -16.99829 -16.74407 -16.59299 -16.37784 -16.07191 -15.77620 -15.45036 -15.12149 -15.02247 -14.98249 -14.73701 -14.42794 -14.25053 -13.83003 -13.77071 -13.43300 -13.29176 -13.28789 -13.26685 -13.07636 -12.96881 -12.77160 -12.68492 -12.45190 -12.26958 -12.14030 -12.00026 -11.58711 -11.51171 -11.09865 -10.99420 -10.60100 -10.44691 -10.09982 -9.77161 -9.51503 -9.01300 -7.93545 -5.21708 0.32444 0.55070 1.47628 1.49067 1.56927 1.57236 1.72860 2.03998 2.56311 2.62511 2.93321 3.41039 3.56024 3.67654 3.73234 3.88364 3.92547 4.01005 4.05156 4.09532 4.18269 4.36643 4.56172 4.61904 4.65809 4.66881 4.73265 4.77030 4.79886 4.81660 4.82325 5.03731 5.08847 5.14449 5.17981 5.21506 5.24576 5.38892 5.44794 5.51454 5.58451 5.65656 5.86030 5.94143 6.11505 6.28900 6.47065 6.56753 7.25475 7.34936 7.44011 8.10515 8.33727 9.30011 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.028495 B = 0.001964 C = 0.001935 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.401561 B =14256.399162 C =14468.328332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.198 3.802 3 H 0.054 0.946 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.078 4.078 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.290 1.290 11 H -0.298 1.298 12 H -0.268 1.268 13 C -0.073 4.073 14 C -0.120 4.120 15 C -0.092 4.092 16 C -0.113 4.113 17 C 0.173 3.827 18 N -0.708 5.708 19 C 0.512 3.488 20 O -0.556 6.556 21 C -0.097 4.097 22 C -0.138 4.138 23 C -0.139 4.139 24 C 0.518 3.482 25 N -0.831 5.831 26 O -0.565 6.565 27 C -0.098 4.098 28 C -0.122 4.122 29 H 0.041 0.959 30 H 0.041 0.959 31 H 0.072 0.928 32 H 0.374 0.626 33 H 0.250 0.750 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.414 0.586 39 H 0.093 0.907 40 H 0.107 0.893 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.418 0.582 46 H 0.408 0.592 47 H 0.130 0.870 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.168 -1.045 28.055 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.090 3.910 3 H 0.072 0.928 4 N -0.377 5.377 5 C -0.368 4.368 6 H 0.096 0.904 7 C -0.270 4.270 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.217 1.217 11 H -0.224 1.224 12 H -0.192 1.192 13 C -0.074 4.074 14 C -0.138 4.138 15 C -0.110 4.110 16 C -0.113 4.113 17 C 0.049 3.951 18 N -0.362 5.362 19 C 0.297 3.703 20 O -0.432 6.432 21 C -0.104 4.104 22 C -0.195 4.195 23 C -0.196 4.196 24 C 0.301 3.699 25 N -0.397 5.397 26 O -0.442 6.442 27 C -0.117 4.117 28 C -0.141 4.141 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.207 0.793 33 H 0.058 0.942 34 H 0.156 0.844 35 H 0.164 0.836 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.251 0.749 39 H 0.112 0.888 40 H 0.125 0.875 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.126 0.874 44 H 0.111 0.889 45 H 0.251 0.749 46 H 0.240 0.760 47 H 0.148 0.852 48 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.590 -1.246 28.042 30.001 hybrid contribution 0.009 -0.258 -1.322 1.347 sum -10.581 -1.504 26.720 28.778 Atomic orbital electron populations 1.22244 0.96557 1.00964 1.00966 1.19436 0.93221 0.94644 0.83692 0.92805 1.42742 1.78508 1.10445 1.05979 1.19638 1.34726 0.94304 0.88169 0.90423 1.25544 1.03100 0.96909 1.01469 1.69815 1.52689 1.10219 1.29400 0.85164 0.77817 0.77473 0.79462 1.21702 1.22438 1.19233 1.20320 0.97381 0.94164 0.95540 1.21183 0.99299 1.00653 0.92652 1.21197 0.98126 0.93459 0.98245 1.19688 1.02611 0.93997 0.95036 1.19986 0.88834 0.99307 0.86950 1.45909 1.12326 1.59779 1.18136 1.20615 0.89970 0.77415 0.82279 1.90844 1.26179 1.51095 1.75084 1.20916 0.95693 1.00648 0.93126 1.21948 1.01329 0.91745 1.04473 1.21954 0.96890 0.98390 1.02394 1.20364 0.85773 0.78642 0.85141 1.43605 1.12493 1.62241 1.21346 1.90888 1.18881 1.54574 1.79854 1.21103 0.97831 1.00212 0.92511 1.20954 1.00674 0.94458 0.97967 0.94011 0.93983 0.90908 0.79266 0.94155 0.84362 0.83593 0.90960 0.91875 0.74877 0.88804 0.87481 0.92941 0.93265 0.87410 0.88934 0.74931 0.75999 0.85236 0.87833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.96 9.47 71.98 0.68 -4.28 16 2 C 0.20 7.57 3.09 44.25 0.14 7.70 16 3 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16 4 N -0.74 -36.55 5.07 -326.51 -1.66 -38.21 16 5 C -0.24 -12.97 9.93 84.03 0.83 -12.13 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 7 C -0.08 -4.48 5.50 84.86 0.47 -4.01 16 8 N -0.97 -59.48 13.06 21.65 0.28 -59.20 16 9 Si 0.97 46.07 29.55 68.60 2.03 48.09 16 10 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 11 H -0.30 -14.28 7.11 99.48 0.71 -13.57 16 12 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 13 C -0.07 -2.37 4.95 -19.87 -0.10 -2.47 16 14 C -0.12 -3.08 9.67 22.27 0.22 -2.86 16 15 C -0.09 -1.98 9.70 22.27 0.22 -1.77 16 16 C -0.11 -2.54 5.25 -19.86 -0.10 -2.64 16 17 C 0.17 3.71 5.80 85.63 0.50 4.21 16 18 N -0.71 -12.40 5.33 -466.78 -2.49 -14.89 16 19 C 0.51 11.58 6.47 87.66 0.57 12.15 16 20 O -0.56 -19.41 14.18 20.40 0.29 -19.13 16 21 C -0.10 -1.29 0.72 -53.68 -0.04 -1.33 16 22 C -0.14 -0.83 8.27 71.98 0.60 -0.24 16 23 C -0.14 -0.98 8.27 71.98 0.59 -0.39 16 24 C 0.52 9.67 6.75 87.66 0.59 10.26 16 25 N -0.83 -6.10 8.66 -173.53 -1.50 -7.60 16 26 O -0.57 -18.40 15.02 20.40 0.31 -18.09 16 27 C -0.10 -2.59 9.70 22.27 0.22 -2.37 16 28 C -0.12 -3.97 9.06 22.27 0.20 -3.77 16 29 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 30 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 32 H 0.37 20.00 6.06 -92.70 -0.56 19.44 16 33 H 0.25 14.90 8.31 -92.71 -0.77 14.13 16 34 H 0.14 3.03 8.04 -2.91 -0.02 3.01 16 35 H 0.15 2.37 8.06 -2.91 -0.02 2.34 16 36 H 0.07 1.62 8.09 -2.39 -0.02 1.60 16 37 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 38 H 0.41 4.84 7.30 -92.71 -0.68 4.16 16 39 H 0.09 0.28 7.56 -2.39 -0.02 0.26 16 40 H 0.11 -0.07 7.57 -2.39 -0.02 -0.09 16 41 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 42 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 43 H 0.11 0.02 7.56 -2.39 -0.02 0.00 16 44 H 0.09 0.40 7.57 -2.39 -0.02 0.38 16 45 H 0.42 -0.40 7.66 -92.71 -0.71 -1.11 16 46 H 0.41 2.65 8.93 -92.70 -0.83 1.82 16 47 H 0.13 3.07 8.06 -2.91 -0.02 3.05 16 48 H 0.10 3.84 6.92 -2.91 -0.02 3.82 16 Total: -1.00 -85.40 397.02 1.06 -84.34 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -1.77 Total: 28.61 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 5.57 Total: -3.93 kcal Atomic # 7 Polarization: -114.53 SS G_CDS: -5.37 Total: -119.90 kcal Atomic # 8 Polarization: -37.81 SS G_CDS: 0.60 Total: -37.22 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.09 kcal Total: -85.40 1.06 -84.34 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754947057.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.711 kcal (2) G-P(sol) polarization free energy of solvation -85.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds