Wall clock time and date at job start Tue Mar 31 2020 23:39:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.46955 * 2 1 4 4 C 1.53005 * 109.46700 * 240.00585 * 2 1 3 5 5 O 1.42898 * 109.47445 * 304.99614 * 4 2 1 6 6 C 1.42903 * 114.00286 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47182 * 180.02562 * 6 5 4 8 8 C 1.52994 * 109.47068 * 294.99882 * 7 6 5 9 9 C 1.52999 * 109.47068 * 179.97438 * 8 7 6 10 10 C 1.52996 * 109.47028 * 59.99737 * 9 8 7 11 11 C 1.52994 * 109.47411 * 300.00054 * 10 9 8 12 12 C 1.52996 * 109.47028 * 174.99619 * 7 6 5 13 13 N 1.46499 * 109.47537 * 120.00652 * 2 1 3 14 14 S 1.65593 * 119.99833 * 265.00113 * 13 2 1 15 15 O 1.42104 * 104.27905 * 308.92754 * 14 13 2 16 16 O 1.42102 * 104.27718 * 181.06534 * 14 13 2 17 17 C 1.81399 * 104.45079 * 64.99683 * 14 13 2 18 18 C 1.53005 * 109.47445 * 179.97438 * 17 14 13 19 19 C 1.50696 * 109.47353 * 179.97438 * 18 17 14 20 20 H 1.08000 * 120.00290 * 0.02562 * 19 18 17 21 21 C 1.37870 * 119.99993 * 180.02562 * 19 18 17 22 22 N 1.31515 * 120.00258 * 0.02562 * 21 19 18 23 23 Si 1.86800 * 120.00043 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46904 * 90.00228 * 23 21 19 25 25 H 1.48501 * 109.47483 * 209.99891 * 23 21 19 26 26 H 1.48494 * 109.47201 * 330.00053 * 23 21 19 27 27 H 1.08998 * 109.47034 * 299.99249 * 1 2 3 28 28 H 1.08996 * 109.46994 * 59.99659 * 1 2 3 29 29 H 1.09007 * 109.46559 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47487 * 65.00037 * 4 2 1 31 31 H 1.09002 * 109.46619 * 184.99693 * 4 2 1 32 32 H 1.09005 * 109.46591 * 299.99866 * 6 5 4 33 33 H 1.08999 * 109.46983 * 59.99639 * 6 5 4 34 34 H 1.09000 * 109.46997 * 54.99850 * 7 6 5 35 35 H 1.09000 * 109.47185 * 299.99853 * 8 7 6 36 36 H 1.09007 * 109.47404 * 60.00110 * 8 7 6 37 37 H 1.09003 * 109.47433 * 300.00202 * 9 8 7 38 38 H 1.08998 * 109.47291 * 179.97438 * 9 8 7 39 39 H 1.09003 * 109.47241 * 179.97438 * 10 9 8 40 40 H 1.09000 * 109.47043 * 60.00259 * 10 9 8 41 41 H 1.09000 * 109.47185 * 300.00118 * 11 10 9 42 42 H 1.09007 * 109.47404 * 179.97438 * 11 10 9 43 43 H 1.08998 * 109.47205 * 300.00200 * 12 7 6 44 44 H 1.09000 * 109.47043 * 60.00259 * 12 7 6 45 45 H 0.97001 * 119.99882 * 84.99585 * 13 2 1 46 46 H 1.09001 * 109.47190 * 299.99797 * 17 14 13 47 47 H 1.09004 * 109.47089 * 59.99930 * 17 14 13 48 48 H 1.09001 * 109.46962 * 300.00183 * 18 17 14 49 49 H 1.09004 * 109.46832 * 60.00020 * 18 17 14 50 50 H 0.96999 * 120.00397 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2494 5 8 1.4702 -2.0303 -1.3097 6 6 1.8844 -2.7928 -2.4451 7 6 1.2160 -4.1685 -2.4070 8 6 1.7208 -4.9471 -1.1906 9 6 1.0519 -6.3226 -1.1521 10 6 1.3951 -7.0925 -2.4289 11 6 0.8904 -6.3139 -3.6453 12 6 1.5598 -4.9381 -3.6838 13 7 2.0185 -0.6907 1.1960 14 16 2.4123 0.1769 2.5504 15 8 3.2875 1.1905 2.0750 16 8 2.8607 -0.8032 3.4764 17 6 0.8409 0.8986 3.0985 18 6 1.0752 1.7336 4.3590 19 6 -0.2301 2.3337 4.8140 20 1 -1.1364 2.1386 4.2598 21 6 -0.2675 3.1317 5.9376 22 7 0.8361 3.3696 6.6122 23 14 -1.8857 3.8749 6.5020 24 1 -2.5559 2.9436 7.4448 25 1 -1.6253 5.1677 7.1846 26 1 -2.7622 4.1041 5.3255 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0278 -0.0005 30 1 1.7516 -0.1582 -2.1371 31 1 3.1263 -0.7993 -1.2057 32 1 1.5930 -2.2728 -3.3578 33 1 2.9675 -2.9139 -2.4259 34 1 0.1353 -4.0455 -2.3368 35 1 2.8015 -5.0701 -1.2608 36 1 1.4758 -4.3988 -0.2808 37 1 -0.0289 -6.1993 -1.0817 38 1 1.4118 -6.8776 -0.2857 39 1 0.9190 -8.0727 -2.4013 40 1 2.4758 -7.2159 -2.4993 41 1 -0.1903 -6.1905 -3.5748 42 1 1.1354 -6.8622 -4.5550 43 1 1.2002 -4.3833 -4.5504 44 1 2.6406 -5.0611 -3.7540 45 1 2.1111 -1.6563 1.1946 46 1 0.4388 1.5350 2.3102 47 1 0.1317 0.1006 3.3184 48 1 1.4771 1.0969 5.1471 49 1 1.7846 2.5317 4.1394 50 1 0.8099 3.9314 7.4026 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000921451855.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:01 Heat of formation + Delta-G solvation = -165.510921 kcal Electronic energy + Delta-G solvation = -27297.316559 eV Core-core repulsion = 23449.981506 eV Total energy + Delta-G solvation = -3847.335053 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 333.181 amu Computer time = 6.16 seconds Orbital eigenvalues (eV) -39.40434 -38.08913 -36.56087 -35.67330 -35.36513 -33.87847 -32.11953 -31.17093 -31.04860 -29.91576 -26.92465 -25.62105 -25.39762 -22.89951 -21.71485 -21.55392 -21.28108 -20.04110 -18.99443 -17.58113 -16.80917 -16.55211 -16.30138 -15.83746 -15.73921 -15.35732 -14.87473 -14.56404 -14.53716 -14.42918 -14.13506 -13.87047 -13.55848 -13.40571 -12.81379 -12.59087 -12.50244 -12.46450 -12.35682 -12.13538 -11.71315 -11.59318 -11.53702 -11.53088 -11.45135 -11.36846 -11.22384 -11.06625 -11.01405 -10.81420 -10.74760 -10.39428 -10.38826 -10.34578 -10.32771 -9.79769 -9.77226 -9.45126 -8.99989 -8.48675 -6.10763 -4.16104 0.85110 3.15581 3.27138 3.33319 3.35952 3.41298 4.29112 4.32458 4.40170 4.41249 4.46235 4.66653 4.71069 4.76950 4.93083 4.95822 5.01283 5.09080 5.12232 5.18739 5.19805 5.24390 5.26745 5.29112 5.34336 5.36821 5.42290 5.55629 5.59304 5.65025 5.71060 5.78239 5.80590 5.83611 5.86310 5.87584 5.96833 6.10955 6.15472 6.17474 6.31709 6.55641 6.99100 7.22886 7.32712 7.39201 7.82337 8.19661 8.87329 9.48480 11.00261 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.019325 B = 0.002259 C = 0.002219 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1448.564239 B =12389.343110 C =12614.058208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.151 3.849 3 H 0.103 0.897 4 C 0.060 3.940 5 O -0.379 6.379 6 C 0.066 3.934 7 C -0.084 4.084 8 C -0.113 4.113 9 C -0.121 4.121 10 C -0.121 4.121 11 C -0.118 4.118 12 C -0.113 4.113 13 N -1.118 6.118 14 S 2.592 3.408 15 O -0.970 6.970 16 O -0.968 6.968 17 C -0.591 4.591 18 C 0.028 3.972 19 C -0.519 4.519 20 H 0.061 0.939 21 C 0.057 3.943 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.285 1.285 26 H -0.273 1.273 27 H 0.067 0.933 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.057 0.943 32 H 0.047 0.953 33 H 0.047 0.953 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.061 0.939 43 H 0.062 0.938 44 H 0.063 0.937 45 H 0.416 0.584 46 H 0.120 0.880 47 H 0.121 0.879 48 H 0.033 0.967 49 H 0.033 0.967 50 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.262 -16.686 -22.978 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.043 3.957 3 H 0.121 0.879 4 C -0.018 4.018 5 O -0.298 6.298 6 C -0.011 4.011 7 C -0.103 4.103 8 C -0.150 4.150 9 C -0.159 4.159 10 C -0.158 4.158 11 C -0.155 4.155 12 C -0.151 4.151 13 N -0.876 5.876 14 S 2.689 3.311 15 O -0.960 6.960 16 O -0.959 6.959 17 C -0.724 4.724 18 C -0.011 4.011 19 C -0.558 4.558 20 H 0.079 0.921 21 C -0.146 4.146 22 N -0.529 5.529 23 Si 0.727 3.273 24 H -0.205 1.205 25 H -0.210 1.210 26 H -0.198 1.198 27 H 0.086 0.914 28 H 0.083 0.917 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.078 0.922 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.250 0.750 46 H 0.138 0.862 47 H 0.140 0.860 48 H 0.051 0.949 49 H 0.051 0.949 50 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.107 -16.405 -22.351 27.747 hybrid contribution -1.319 0.224 0.026 1.338 sum -0.212 -16.181 -22.325 27.573 Atomic orbital electron populations 1.22380 0.94724 1.03679 1.02735 1.20842 0.94857 0.96068 0.83957 0.87898 1.22749 0.97612 0.84068 0.97403 1.87866 1.70181 1.26270 1.45475 1.22545 0.98162 0.91883 0.88500 1.21138 1.01093 0.92538 0.95520 1.21542 0.99890 0.95287 0.98281 1.21548 1.00797 0.96074 0.97432 1.21553 1.01035 0.98420 0.94837 1.21512 1.00381 0.95570 0.98047 1.21524 1.00847 0.95870 0.96810 1.55784 1.84136 1.19911 1.27734 1.05548 0.78229 0.74383 0.72932 1.93535 1.62547 1.60338 1.79546 1.93550 1.80597 1.59291 1.62416 1.30553 1.19074 1.11743 1.11038 1.18964 0.99527 0.94313 0.88317 1.20999 0.93472 1.30362 1.10976 0.92053 1.25072 0.96773 0.96293 0.96429 1.69955 1.26894 1.37838 1.18179 0.86471 0.83326 0.78619 0.78863 1.20493 1.21047 1.19784 0.91444 0.91706 0.90892 0.92218 0.92456 0.93516 0.93442 0.90334 0.92228 0.90853 0.91987 0.91971 0.92222 0.92101 0.91921 0.92064 0.91954 0.91857 0.75008 0.86205 0.86020 0.94875 0.94860 0.92562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 9.28 37.16 0.34 -1.52 16 2 C 0.15 1.71 3.21 -67.93 -0.22 1.49 16 3 H 0.10 1.17 7.48 -51.93 -0.39 0.78 16 4 C 0.06 0.57 5.73 37.16 0.21 0.78 16 5 O -0.38 -3.71 8.71 -35.23 -0.31 -4.02 16 6 C 0.07 0.52 5.32 37.16 0.20 0.72 16 7 C -0.08 -0.62 2.43 -90.63 -0.22 -0.84 16 8 C -0.11 -0.90 5.10 -26.73 -0.14 -1.04 16 9 C -0.12 -0.88 5.92 -26.73 -0.16 -1.04 16 10 C -0.12 -0.76 5.92 -26.74 -0.16 -0.92 16 11 C -0.12 -0.69 5.92 -26.71 -0.16 -0.85 16 12 C -0.11 -0.68 5.21 -26.71 -0.14 -0.82 16 13 N -1.12 -14.90 5.35 -4.89 -0.03 -14.93 16 14 S 2.59 46.59 5.44 -107.50 -0.58 46.00 16 15 O -0.97 -20.01 17.39 -57.54 -1.00 -21.01 16 16 O -0.97 -20.44 18.08 -57.54 -1.04 -21.48 16 17 C -0.59 -11.26 5.16 37.16 0.19 -11.07 16 18 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 19 C -0.52 -14.32 9.11 -34.44 -0.31 -14.64 16 20 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 21 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.57 13.29 55.43 0.74 -25.83 16 23 Si 0.90 21.26 29.54 -169.99 -5.02 16.24 16 24 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 27 H 0.07 0.77 5.78 -51.93 -0.30 0.47 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.07 0.78 7.56 -51.93 -0.39 0.39 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 45 H 0.42 5.06 8.54 -34.47 -0.29 4.76 16 46 H 0.12 2.02 6.77 -51.92 -0.35 1.67 16 47 H 0.12 2.11 8.14 -51.92 -0.42 1.69 16 48 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 49 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 50 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 LS Contribution 404.43 15.07 6.09 6.09 Total: -1.00 -34.24 404.43 -11.22 -45.47 By element: Atomic # 1 Polarization: 10.40 SS G_CDS: -9.28 Total: 1.11 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: -0.79 Total: -27.66 kcal Atomic # 7 Polarization: -41.47 SS G_CDS: 0.71 Total: -40.76 kcal Atomic # 8 Polarization: -44.16 SS G_CDS: -2.35 Total: -46.51 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: 46.59 SS G_CDS: -0.58 Total: 46.00 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.24 -11.22 -45.47 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000921451855.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.044 kcal (2) G-P(sol) polarization free energy of solvation -34.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.16 seconds