Wall clock time and date at job start Wed Apr 1 2020 00:05:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47363 * 2 1 4 4 O 1.42905 * 109.46850 * 120.00349 * 2 1 3 5 5 C 1.42902 * 113.99742 * 269.99461 * 4 2 1 6 6 C 1.50698 * 109.47056 * 180.02562 * 5 4 2 7 7 C 1.38646 * 120.79268 * 269.72053 * 6 5 4 8 8 C 1.38206 * 119.16715 * 179.75364 * 7 6 5 9 9 N 1.31873 * 120.75736 * 0.53735 * 8 7 6 10 10 C 1.31869 * 121.72667 * 359.73431 * 9 8 7 11 11 C 1.38201 * 120.76485 * 359.97438 * 10 9 8 12 12 C 1.50695 * 109.47050 * 240.00021 * 2 1 3 13 13 O 1.21284 * 120.00069 * 250.09485 * 12 2 1 14 14 N 1.34776 * 120.00179 * 70.09268 * 12 2 1 15 15 C 1.46928 * 120.62933 * 5.08240 * 14 12 2 16 16 C 1.52755 * 109.01185 * 233.58147 * 15 14 12 17 17 C 1.53044 * 109.38184 * 305.58892 * 16 15 14 18 18 C 1.53036 * 109.53844 * 61.23885 * 17 16 15 19 19 H 1.09004 * 109.50259 * 58.58656 * 18 17 16 20 20 N 1.46494 * 109.52485 * 178.66815 * 18 17 16 21 21 C 1.36939 * 120.00116 * 274.84998 * 20 18 17 22 22 H 1.08003 * 119.99926 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00363 * 179.97438 * 21 20 18 24 24 N 1.31615 * 119.99757 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00092 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47256 * 60.00134 * 25 23 21 27 27 H 1.48500 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47321 * 300.00254 * 25 23 21 29 29 C 1.46924 * 120.63421 * 185.36071 * 14 12 2 30 30 H 1.09001 * 109.47068 * 295.00628 * 1 2 3 31 31 H 1.09001 * 109.47107 * 55.00781 * 1 2 3 32 32 H 1.08999 * 109.47369 * 175.01067 * 1 2 3 33 33 H 1.09004 * 109.47030 * 60.00140 * 5 4 2 34 34 H 1.08994 * 109.47169 * 300.00606 * 5 4 2 35 35 H 1.08004 * 120.42072 * 0.02562 * 7 6 5 36 36 H 1.07991 * 119.62488 * 180.29523 * 8 7 6 37 37 H 1.08004 * 119.61247 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.41654 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.58591 * 353.42086 * 15 14 12 40 40 H 1.09001 * 109.58275 * 113.83721 * 15 14 12 41 41 H 1.08995 * 109.56598 * 185.55144 * 16 15 14 42 42 H 1.09003 * 109.38695 * 65.51095 * 16 15 14 43 43 H 1.08995 * 109.45618 * 301.21636 * 17 16 15 44 44 H 1.08996 * 109.44683 * 181.25231 * 17 16 15 45 45 H 0.96995 * 120.00250 * 94.85499 * 20 18 17 46 46 H 0.96999 * 119.99731 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.58385 * 246.16026 * 29 14 12 48 48 H 1.08995 * 109.58505 * 6.43812 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1828 2.2941 6 6 2.7014 -0.6283 3.4610 7 6 1.8149 -1.2044 4.3580 8 6 2.3112 -1.9459 5.4134 9 7 3.6106 -2.0991 5.5778 10 6 4.4828 -1.5612 4.7478 11 6 4.0602 -0.8116 3.6664 12 6 2.0323 -0.7104 -1.2304 13 8 2.5716 -1.7919 -1.1286 14 7 1.8822 -0.1439 -2.4441 15 6 1.3325 1.2124 -2.5744 16 6 0.1529 1.1802 -3.5443 17 6 0.5998 0.5531 -4.8669 18 6 1.0643 -0.8841 -4.6207 19 1 0.2500 -1.4593 -4.1800 20 7 1.4621 -1.4946 -5.8916 21 6 0.5199 -2.0797 -6.6947 22 1 -0.5166 -2.0908 -6.3913 23 6 0.8967 -2.6578 -7.8992 24 7 2.1597 -2.6438 -8.2691 25 14 -0.3888 -3.4553 -8.9950 26 1 -1.4038 -2.4437 -9.3846 27 1 0.2656 -3.9942 -10.2143 28 1 -1.0504 -4.5616 -8.2576 29 6 2.2595 -0.8732 -3.6625 30 1 -0.3633 0.4344 0.9313 31 1 -0.3633 0.5893 -0.8419 32 1 -0.3634 -1.0237 -0.0894 33 1 1.2538 0.6546 2.5589 34 1 2.9319 0.9512 2.0450 35 1 0.7497 -1.0790 4.2311 36 1 1.6272 -2.4019 6.1137 37 1 5.5396 -1.7089 4.9147 38 1 4.7795 -0.3733 2.9904 39 1 0.9932 1.5643 -1.6001 40 1 2.1009 1.8826 -2.9598 41 1 -0.1997 2.1958 -3.7240 42 1 -0.6533 0.5860 -3.1141 43 1 1.4221 1.1340 -5.2846 44 1 -0.2352 0.5499 -5.5675 45 1 2.3929 -1.4844 -6.1642 46 1 2.4230 -3.0481 -9.1106 47 1 3.1050 -0.3765 -4.1386 48 1 2.5341 -1.8962 -3.4057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001209723708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:53 Heat of formation + Delta-G solvation = -26.960691 kcal Electronic energy + Delta-G solvation = -28392.882223 eV Core-core repulsion = 24448.403959 eV Total energy + Delta-G solvation = -3944.478264 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 21.42 seconds Orbital eigenvalues (eV) -40.60836 -40.25863 -38.28544 -37.07756 -34.64805 -33.75091 -32.38159 -31.61322 -31.53764 -30.97037 -28.29210 -27.25856 -25.71555 -24.22789 -23.79988 -23.21951 -22.34122 -22.10532 -20.30174 -18.94887 -17.86911 -17.24308 -17.05148 -16.84690 -16.63828 -15.94052 -15.57813 -15.51619 -15.00734 -14.54600 -14.30551 -14.22683 -14.09708 -13.96833 -13.74434 -13.56384 -13.20188 -13.15573 -12.92798 -12.63260 -12.47851 -12.28380 -12.18393 -11.87149 -11.57118 -11.13515 -10.98852 -10.91364 -10.70005 -10.45997 -10.40202 -10.23866 -10.12314 -10.08041 -9.81770 -9.73877 -9.47149 -9.42517 -8.93427 -8.45943 -7.01648 -5.79599 -3.09506 0.78702 0.81820 2.63550 2.71708 3.38153 3.42579 3.47267 3.48098 3.73588 4.14530 4.23725 4.31486 4.41906 4.55115 4.57520 4.67982 4.74466 4.79606 4.83273 4.92358 4.97710 5.06741 5.20086 5.27353 5.29310 5.38039 5.44817 5.46236 5.52347 5.59731 5.61297 5.71132 5.76368 5.84167 5.95172 6.00312 6.11498 6.19448 6.34199 6.34987 6.48883 6.58070 6.74086 6.85489 7.00339 7.49646 7.63674 7.66546 8.25844 8.38353 9.49365 10.04311 10.39273 11.42743 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.002134 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.432788 B =13119.737778 C =13637.546314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.073 3.927 3 H 0.084 0.916 4 O -0.348 6.348 5 C 0.098 3.902 6 C -0.044 4.044 7 C -0.151 4.151 8 C 0.095 3.905 9 N -0.483 5.483 10 C 0.096 3.904 11 C -0.149 4.149 12 C 0.514 3.486 13 O -0.519 6.519 14 N -0.603 5.603 15 C 0.102 3.898 16 C -0.135 4.135 17 C -0.137 4.137 18 C 0.169 3.831 19 H 0.050 0.950 20 N -0.721 5.721 21 C -0.240 4.240 22 H 0.070 0.930 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.908 3.092 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.285 1.285 29 C 0.108 3.892 30 H 0.068 0.932 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.136 0.864 36 H 0.157 0.843 37 H 0.158 0.842 38 H 0.137 0.863 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.064 0.936 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.385 0.615 46 H 0.256 0.744 47 H 0.066 0.934 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.283 12.872 24.800 27.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.011 3.989 3 H 0.102 0.898 4 O -0.266 6.266 5 C 0.021 3.979 6 C -0.052 4.052 7 C -0.171 4.171 8 C -0.062 4.062 9 N -0.192 5.192 10 C -0.060 4.060 11 C -0.169 4.169 12 C 0.299 3.701 13 O -0.393 6.393 14 N -0.338 5.338 15 C -0.021 4.021 16 C -0.173 4.173 17 C -0.178 4.178 18 C 0.058 3.942 19 H 0.068 0.932 20 N -0.362 5.362 21 C -0.371 4.371 22 H 0.088 0.912 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.739 3.261 26 H -0.213 1.213 27 H -0.217 1.217 28 H -0.212 1.212 29 C -0.014 4.014 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.154 0.846 36 H 0.175 0.825 37 H 0.175 0.825 38 H 0.155 0.845 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.076 0.924 44 H 0.085 0.915 45 H 0.218 0.782 46 H 0.066 0.934 47 H 0.084 0.916 48 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -0.774 11.486 25.464 27.945 hybrid contribution -0.814 0.460 -1.639 1.887 sum -1.588 11.946 23.825 26.699 Atomic orbital electron populations 1.22327 0.93251 1.04399 1.03221 1.21938 0.95356 0.96072 0.85491 0.89797 1.88148 1.86582 1.33462 1.18437 1.21416 1.00070 0.91673 0.84726 1.19957 0.93707 0.96824 0.94686 1.22085 1.01011 0.98243 0.95771 1.22780 0.91980 0.95299 0.96106 1.67672 1.03406 1.19533 1.28625 1.22792 0.99759 0.93025 0.90463 1.22116 0.95873 0.99864 0.99047 1.20216 0.79623 0.86223 0.83995 1.90737 1.41804 1.21127 1.85657 1.48043 1.63547 1.16391 1.05847 1.21808 0.96715 0.83318 1.00224 1.21884 0.97186 1.01223 0.97047 1.22285 1.01563 0.98717 0.95227 1.20472 0.94348 0.92136 0.87294 0.93200 1.42297 1.08512 1.67400 1.17961 1.19148 0.89854 1.29144 0.98997 0.91212 1.24756 0.96225 1.01527 0.98290 1.69649 1.14714 1.49977 1.23581 0.86258 0.80507 0.79261 0.80081 1.21269 1.21661 1.21210 1.22021 0.98054 0.97969 0.83401 0.91271 0.90178 0.90824 0.91681 0.91766 0.84575 0.82544 0.82488 0.84524 0.90315 0.91164 0.91206 0.91756 0.92410 0.91471 0.78165 0.93377 0.91581 0.88921 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.52 9.19 37.16 0.34 -1.18 16 2 C 0.07 0.78 2.28 -27.89 -0.06 0.72 16 3 H 0.08 0.64 6.80 -51.93 -0.35 0.29 16 4 O -0.35 -4.27 9.52 -54.94 -0.52 -4.80 16 5 C 0.10 0.80 5.92 36.00 0.21 1.01 16 6 C -0.04 -0.40 5.55 -104.32 -0.58 -0.98 16 7 C -0.15 -1.26 9.82 -39.44 -0.39 -1.65 16 8 C 0.10 0.83 11.18 -17.55 -0.20 0.64 16 9 N -0.48 -5.06 10.36 -13.25 -0.14 -5.20 16 10 C 0.10 0.88 11.18 -17.55 -0.20 0.68 16 11 C -0.15 -1.33 9.82 -39.44 -0.39 -1.72 16 12 C 0.51 7.84 7.03 -10.99 -0.08 7.77 16 13 O -0.52 -10.48 15.97 -14.15 -0.23 -10.71 16 14 N -0.60 -8.56 2.98 -173.03 -0.52 -9.08 16 15 C 0.10 1.05 5.57 -3.93 -0.02 1.03 16 16 C -0.13 -1.54 5.95 -26.83 -0.16 -1.70 16 17 C -0.14 -2.22 5.47 -26.69 -0.15 -2.37 16 18 C 0.17 3.27 2.92 -67.82 -0.20 3.07 16 19 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 20 N -0.72 -17.77 5.12 -53.31 -0.27 -18.05 16 21 C -0.24 -6.59 9.93 -15.06 -0.15 -6.74 16 22 H 0.07 1.86 7.83 -52.48 -0.41 1.45 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -27.95 13.06 55.49 0.72 -27.23 16 25 Si 0.91 22.30 29.55 -169.99 -5.02 17.28 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 28 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 29 C 0.11 1.90 5.89 -3.71 -0.02 1.87 16 30 H 0.07 0.44 7.78 -51.93 -0.40 0.04 16 31 H 0.08 0.61 5.68 -51.93 -0.30 0.31 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.38 7.74 -51.93 -0.40 -0.02 16 34 H 0.06 0.42 8.04 -51.93 -0.42 0.00 16 35 H 0.14 0.83 8.06 -52.48 -0.42 0.41 16 36 H 0.16 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.16 1.02 8.06 -52.48 -0.42 0.60 16 38 H 0.14 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.08 0.57 4.52 -51.93 -0.23 0.34 16 40 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.74 7.78 -51.93 -0.40 0.34 16 43 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 44 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 45 H 0.38 10.08 7.80 -40.82 -0.32 9.76 16 46 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 47 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 48 H 0.09 1.88 7.04 -51.93 -0.37 1.51 16 LS Contribution 389.58 15.07 5.87 5.87 Total: -1.00 -35.36 389.58 -9.62 -44.97 By element: Atomic # 1 Polarization: 14.28 SS G_CDS: -7.39 Total: 6.89 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: -2.12 Total: 0.04 kcal Atomic # 7 Polarization: -59.35 SS G_CDS: -0.20 Total: -59.55 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: -0.75 Total: -15.50 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -35.36 -9.62 -44.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209723708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.011 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 21.42 seconds