Wall clock time and date at job start Wed Apr 1 2020 00:05:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47363 * 2 1 4 4 O 1.42905 * 109.46850 * 120.00349 * 2 1 3 5 5 C 1.42902 * 113.99742 * 269.99461 * 4 2 1 6 6 C 1.50698 * 109.47056 * 180.02562 * 5 4 2 7 7 C 1.38646 * 120.79268 * 269.72053 * 6 5 4 8 8 C 1.38206 * 119.16715 * 179.75364 * 7 6 5 9 9 N 1.31873 * 120.75736 * 0.53735 * 8 7 6 10 10 C 1.31869 * 121.72667 * 359.73431 * 9 8 7 11 11 C 1.38201 * 120.76485 * 359.97438 * 10 9 8 12 12 C 1.50695 * 109.47050 * 240.00021 * 2 1 3 13 13 O 1.21284 * 120.00069 * 250.09485 * 12 2 1 14 14 N 1.34776 * 120.00179 * 70.09268 * 12 2 1 15 15 C 1.46928 * 120.62933 * 5.08240 * 14 12 2 16 16 C 1.52755 * 109.01185 * 233.58147 * 15 14 12 17 17 C 1.53044 * 109.38184 * 305.58892 * 16 15 14 18 18 C 1.53036 * 109.53844 * 61.23885 * 17 16 15 19 19 H 1.09004 * 109.50259 * 58.58656 * 18 17 16 20 20 N 1.46494 * 109.52485 * 178.66815 * 18 17 16 21 21 C 1.36939 * 120.00116 * 274.84998 * 20 18 17 22 22 H 1.08003 * 119.99926 * 0.02562 * 21 20 18 23 23 C 1.38814 * 120.00363 * 179.97438 * 21 20 18 24 24 N 1.31615 * 119.99757 * 0.02562 * 23 21 20 25 25 Si 1.86797 * 120.00092 * 180.02562 * 23 21 20 26 26 H 1.48504 * 109.47256 * 60.00134 * 25 23 21 27 27 H 1.48500 * 109.46995 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47321 * 300.00254 * 25 23 21 29 29 C 1.46924 * 120.63421 * 185.36071 * 14 12 2 30 30 H 1.09001 * 109.47068 * 295.00628 * 1 2 3 31 31 H 1.09001 * 109.47107 * 55.00781 * 1 2 3 32 32 H 1.08999 * 109.47369 * 175.01067 * 1 2 3 33 33 H 1.09004 * 109.47030 * 60.00140 * 5 4 2 34 34 H 1.08994 * 109.47169 * 300.00606 * 5 4 2 35 35 H 1.08004 * 120.42072 * 0.02562 * 7 6 5 36 36 H 1.07991 * 119.62488 * 180.29523 * 8 7 6 37 37 H 1.08004 * 119.61247 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.41654 * 179.97438 * 11 10 9 39 39 H 1.09004 * 109.58591 * 353.42086 * 15 14 12 40 40 H 1.09001 * 109.58275 * 113.83721 * 15 14 12 41 41 H 1.08995 * 109.56598 * 185.55144 * 16 15 14 42 42 H 1.09003 * 109.38695 * 65.51095 * 16 15 14 43 43 H 1.08995 * 109.45618 * 301.21636 * 17 16 15 44 44 H 1.08996 * 109.44683 * 181.25231 * 17 16 15 45 45 H 0.96995 * 120.00250 * 94.85499 * 20 18 17 46 46 H 0.96999 * 119.99731 * 179.97438 * 24 23 21 47 47 H 1.09003 * 109.58385 * 246.16026 * 29 14 12 48 48 H 1.08995 * 109.58505 * 6.43812 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 8 2.0063 -0.6737 1.1668 5 6 2.2001 0.1828 2.2941 6 6 2.7014 -0.6283 3.4610 7 6 1.8149 -1.2044 4.3580 8 6 2.3112 -1.9459 5.4134 9 7 3.6106 -2.0991 5.5778 10 6 4.4828 -1.5612 4.7478 11 6 4.0602 -0.8116 3.6664 12 6 2.0323 -0.7104 -1.2304 13 8 2.5716 -1.7919 -1.1286 14 7 1.8822 -0.1439 -2.4441 15 6 1.3325 1.2124 -2.5744 16 6 0.1529 1.1802 -3.5443 17 6 0.5998 0.5531 -4.8669 18 6 1.0643 -0.8841 -4.6207 19 1 0.2500 -1.4593 -4.1800 20 7 1.4621 -1.4946 -5.8916 21 6 0.5199 -2.0797 -6.6947 22 1 -0.5166 -2.0908 -6.3913 23 6 0.8967 -2.6578 -7.8992 24 7 2.1597 -2.6438 -8.2691 25 14 -0.3888 -3.4553 -8.9950 26 1 -1.4038 -2.4437 -9.3846 27 1 0.2656 -3.9942 -10.2143 28 1 -1.0504 -4.5616 -8.2576 29 6 2.2595 -0.8732 -3.6625 30 1 -0.3633 0.4344 0.9313 31 1 -0.3633 0.5893 -0.8419 32 1 -0.3634 -1.0237 -0.0894 33 1 1.2538 0.6546 2.5589 34 1 2.9319 0.9512 2.0450 35 1 0.7497 -1.0790 4.2311 36 1 1.6272 -2.4019 6.1137 37 1 5.5396 -1.7089 4.9147 38 1 4.7795 -0.3733 2.9904 39 1 0.9932 1.5643 -1.6001 40 1 2.1009 1.8826 -2.9598 41 1 -0.1997 2.1958 -3.7240 42 1 -0.6533 0.5860 -3.1141 43 1 1.4221 1.1340 -5.2846 44 1 -0.2352 0.5499 -5.5675 45 1 2.3929 -1.4844 -6.1642 46 1 2.4230 -3.0481 -9.1106 47 1 3.1050 -0.3765 -4.1386 48 1 2.5341 -1.8962 -3.4057 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001209723708.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:46 Heat of formation + Delta-G solvation = -50.802283 kcal Electronic energy + Delta-G solvation = -28393.916072 eV Core-core repulsion = 24448.403959 eV Total energy + Delta-G solvation = -3945.512113 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.55121 -41.06678 -39.25998 -38.30101 -36.28938 -34.53476 -33.88241 -32.81270 -32.18324 -32.14676 -29.90247 -27.88756 -26.82946 -25.94408 -24.45792 -24.33855 -23.39616 -22.95967 -21.64518 -20.16986 -19.15092 -18.74132 -17.92925 -17.57950 -17.44451 -16.82949 -16.66051 -16.48047 -16.33823 -15.73206 -15.71520 -15.34246 -15.18121 -14.90019 -14.71317 -14.67744 -14.56543 -14.18936 -14.01782 -13.70687 -13.41281 -13.29757 -12.95636 -12.91783 -12.84353 -12.48656 -12.39030 -12.27314 -12.17951 -12.14949 -11.82096 -11.72312 -11.63026 -11.01745 -10.91257 -10.74992 -10.49977 -10.46943 -10.09398 -9.71368 -9.04388 -7.96749 -5.26424 0.13486 0.19372 1.44788 1.48477 1.50460 1.54566 1.70980 2.53775 2.64080 3.05459 3.35469 3.39567 3.58024 3.71193 3.76691 3.78650 3.90929 3.97973 4.06728 4.08316 4.11975 4.14049 4.20346 4.26407 4.36216 4.40103 4.44267 4.58696 4.65909 4.69958 4.76085 4.80554 4.82833 4.87041 4.88078 4.98475 5.06866 5.17172 5.23789 5.34187 5.40316 5.42955 5.49652 5.60551 5.75157 6.01414 6.24756 6.41449 6.99614 7.11452 7.30463 8.03683 8.27493 9.26364 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.020962 B = 0.002134 C = 0.002053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.432788 B =13119.737778 C =13637.546314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.081 3.919 3 H 0.128 0.872 4 O -0.384 6.384 5 C 0.095 3.905 6 C -0.060 4.060 7 C -0.154 4.154 8 C 0.082 3.918 9 N -0.512 5.512 10 C 0.082 3.918 11 C -0.160 4.160 12 C 0.503 3.497 13 O -0.583 6.583 14 N -0.599 5.599 15 C 0.097 3.903 16 C -0.125 4.125 17 C -0.128 4.128 18 C 0.167 3.833 19 H 0.031 0.969 20 N -0.736 5.736 21 C -0.239 4.239 22 H 0.074 0.926 23 C -0.076 4.076 24 N -0.969 5.969 25 Si 0.973 3.027 26 H -0.274 1.274 27 H -0.295 1.295 28 H -0.281 1.281 29 C 0.120 3.880 30 H 0.102 0.898 31 H 0.096 0.904 32 H 0.044 0.956 33 H 0.095 0.905 34 H 0.082 0.918 35 H 0.159 0.841 36 H 0.178 0.822 37 H 0.174 0.826 38 H 0.148 0.852 39 H 0.123 0.877 40 H 0.088 0.912 41 H 0.107 0.893 42 H 0.066 0.934 43 H 0.056 0.944 44 H 0.046 0.954 45 H 0.373 0.627 46 H 0.251 0.749 47 H 0.069 0.931 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.307 15.936 26.399 31.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.020 3.980 3 H 0.145 0.855 4 O -0.303 6.303 5 C 0.019 3.981 6 C -0.069 4.069 7 C -0.173 4.173 8 C -0.074 4.074 9 N -0.222 5.222 10 C -0.074 4.074 11 C -0.180 4.180 12 C 0.292 3.708 13 O -0.462 6.462 14 N -0.333 5.333 15 C -0.024 4.024 16 C -0.164 4.164 17 C -0.169 4.169 18 C 0.058 3.942 19 H 0.050 0.950 20 N -0.377 5.377 21 C -0.371 4.371 22 H 0.092 0.908 23 C -0.268 4.268 24 N -0.619 5.619 25 Si 0.802 3.198 26 H -0.200 1.200 27 H -0.222 1.222 28 H -0.208 1.208 29 C -0.004 4.004 30 H 0.120 0.880 31 H 0.115 0.885 32 H 0.063 0.937 33 H 0.113 0.887 34 H 0.100 0.900 35 H 0.177 0.823 36 H 0.195 0.805 37 H 0.191 0.809 38 H 0.166 0.834 39 H 0.141 0.859 40 H 0.106 0.894 41 H 0.126 0.874 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.065 0.935 45 H 0.205 0.795 46 H 0.060 0.940 47 H 0.087 0.913 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.847 14.621 27.111 30.934 hybrid contribution -0.171 -0.491 -2.042 2.108 sum -3.019 14.131 25.068 28.934 Atomic orbital electron populations 1.22352 0.91414 1.03299 1.05697 1.22008 0.96394 0.96824 0.82771 0.85502 1.88111 1.86981 1.35592 1.19649 1.21654 1.02150 0.91232 0.83031 1.20291 0.93930 0.97244 0.95392 1.22376 1.02166 0.97538 0.95238 1.23225 0.91880 0.95452 0.96859 1.67683 1.04417 1.20513 1.29584 1.23135 1.00594 0.93121 0.90597 1.22347 0.96511 0.99941 0.99177 1.21305 0.78344 0.85680 0.85464 1.90706 1.44695 1.24125 1.86647 1.48118 1.63149 1.17611 1.04426 1.22195 0.96668 0.81034 1.02480 1.21854 0.97636 1.02798 0.94078 1.22072 1.00663 0.96178 0.97952 1.20641 0.94407 0.93704 0.85422 0.95048 1.42497 1.07566 1.68082 1.19510 1.19506 0.90467 1.28002 0.99127 0.90802 1.25578 0.98165 1.03025 1.00042 1.69810 1.16604 1.51617 1.23878 0.85215 0.78225 0.78450 0.77895 1.19955 1.22167 1.20774 1.21560 0.97322 0.96778 0.84768 0.87971 0.88545 0.93674 0.88669 0.89955 0.82314 0.80461 0.80901 0.83410 0.85880 0.89405 0.87439 0.91504 0.92513 0.93471 0.79550 0.93990 0.91292 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.19 71.98 0.66 -1.61 16 2 C 0.08 1.46 2.28 29.85 0.07 1.52 16 3 H 0.13 1.18 6.80 -2.39 -0.02 1.17 16 4 O -0.38 -8.56 9.52 -130.14 -1.24 -9.80 16 5 C 0.09 1.23 5.92 71.24 0.42 1.65 16 6 C -0.06 -1.00 5.55 -19.67 -0.11 -1.11 16 7 C -0.15 -2.29 9.82 22.36 0.22 -2.07 16 8 C 0.08 1.36 11.18 84.68 0.95 2.31 16 9 N -0.51 -10.62 10.36 -195.84 -2.03 -12.64 16 10 C 0.08 1.47 11.18 84.68 0.95 2.42 16 11 C -0.16 -2.72 9.82 22.36 0.22 -2.50 16 12 C 0.50 14.93 7.03 87.66 0.62 15.54 16 13 O -0.58 -24.46 15.97 15.80 0.25 -24.21 16 14 N -0.60 -16.17 2.98 -819.74 -2.44 -18.61 16 15 C 0.10 1.57 5.57 86.22 0.48 2.05 16 16 C -0.13 -2.36 5.95 30.53 0.18 -2.18 16 17 C -0.13 -4.00 5.47 30.62 0.17 -3.83 16 18 C 0.17 6.63 2.92 45.07 0.13 6.76 16 19 H 0.03 1.35 8.08 -2.38 -0.02 1.33 16 20 N -0.74 -37.62 5.12 -322.58 -1.65 -39.28 16 21 C -0.24 -13.40 9.93 84.03 0.83 -12.57 16 22 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.08 -4.40 5.50 84.86 0.47 -3.93 16 24 N -0.97 -59.92 13.06 21.65 0.28 -59.64 16 25 Si 0.97 46.55 29.55 68.60 2.03 48.58 16 26 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 28 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 29 C 0.12 4.33 5.89 86.36 0.51 4.84 16 30 H 0.10 0.73 7.78 -2.39 -0.02 0.71 16 31 H 0.10 0.95 5.68 -2.39 -0.01 0.93 16 32 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 0.64 7.74 -2.38 -0.02 0.62 16 34 H 0.08 0.75 8.04 -2.39 -0.02 0.73 16 35 H 0.16 1.50 8.06 -2.91 -0.02 1.48 16 36 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 37 H 0.17 2.25 8.06 -2.91 -0.02 2.22 16 38 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 39 H 0.12 0.98 4.52 -2.38 -0.01 0.97 16 40 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.07 1.28 7.78 -2.39 -0.02 1.26 16 43 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 44 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.37 20.47 7.80 -92.71 -0.72 19.75 16 46 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 47 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 48 H 0.05 2.39 7.04 -2.39 -0.02 2.37 16 Total: -1.00 -83.25 389.58 2.20 -81.05 By element: Atomic # 1 Polarization: 27.01 SS G_CDS: 0.24 Total: 27.25 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: 6.76 Total: 7.30 kcal Atomic # 7 Polarization: -124.33 SS G_CDS: -5.84 Total: -130.17 kcal Atomic # 8 Polarization: -33.02 SS G_CDS: -0.99 Total: -34.01 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.58 kcal Total: -83.25 2.20 -81.05 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001209723708.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.245 kcal (2) G-P(sol) polarization free energy of solvation -83.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds