Wall clock time and date at job start Wed Apr 1 2020 00:01:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.47452 * 2 1 4 4 O 1.42891 * 109.47388 * 239.99381 * 2 1 3 5 5 C 1.35909 * 116.99888 * 82.97699 * 4 2 1 6 6 C 1.39142 * 120.47327 * 354.63879 * 5 4 2 7 7 C 1.38540 * 118.37095 * 180.02562 * 6 5 4 8 8 C 1.38254 * 119.22379 * 0.02562 * 7 6 5 9 9 N 1.31837 * 120.88678 * 359.97438 * 8 7 6 10 10 C 1.31847 * 121.78309 * 359.70004 * 9 8 7 11 11 C 1.50710 * 109.46763 * 119.99513 * 2 1 3 12 12 O 1.21275 * 119.99903 * 112.66829 * 11 2 1 13 13 N 1.34780 * 119.99697 * 292.66683 * 11 2 1 14 14 C 1.46925 * 120.62332 * 175.26704 * 13 11 2 15 15 C 1.53196 * 108.77270 * 126.41681 * 14 13 11 16 16 C 1.53039 * 109.31641 * 54.62956 * 15 14 13 17 17 C 1.53036 * 109.53646 * 298.63962 * 16 15 14 18 18 H 1.09000 * 109.52885 * 301.38917 * 17 16 15 19 19 C 1.53000 * 109.49732 * 181.31551 * 17 16 15 20 20 N 1.46505 * 109.47425 * 65.15441 * 19 17 16 21 21 C 1.36930 * 119.99954 * 179.97438 * 20 19 17 22 22 H 1.07997 * 120.00224 * 0.02562 * 21 20 19 23 23 C 1.38815 * 119.99858 * 180.02562 * 21 20 19 24 24 N 1.31624 * 119.99936 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00075 * 180.02562 * 23 21 20 26 26 H 1.48509 * 109.47165 * 270.00055 * 25 23 21 27 27 H 1.48496 * 109.47338 * 30.00006 * 25 23 21 28 28 H 1.48497 * 109.47028 * 150.00261 * 25 23 21 29 29 C 1.46919 * 120.63300 * 355.28773 * 13 11 2 30 30 H 1.09003 * 109.47606 * 305.53282 * 1 2 3 31 31 H 1.09008 * 109.46640 * 65.52831 * 1 2 3 32 32 H 1.09003 * 109.47509 * 185.52667 * 1 2 3 33 33 H 1.07997 * 120.81266 * 0.03036 * 6 5 4 34 34 H 1.08002 * 120.38603 * 179.97438 * 7 6 5 35 35 H 1.08005 * 119.55091 * 179.97438 * 8 7 6 36 36 H 1.08000 * 119.65827 * 180.28717 * 10 9 8 37 37 H 1.08995 * 109.58731 * 246.19736 * 14 13 11 38 38 H 1.09000 * 109.59150 * 6.62817 * 14 13 11 39 39 H 1.08997 * 109.49860 * 174.58811 * 15 14 13 40 40 H 1.09007 * 109.49782 * 294.64577 * 15 14 13 41 41 H 1.08991 * 109.46252 * 178.61401 * 16 15 14 42 42 H 1.09003 * 109.45711 * 58.65544 * 16 15 14 43 43 H 1.09002 * 109.46980 * 305.15923 * 19 17 16 44 44 H 1.09000 * 109.47469 * 185.16593 * 19 17 16 45 45 H 0.97002 * 119.99411 * 0.02562 * 20 19 17 46 46 H 0.97002 * 119.99460 * 359.97438 * 24 23 21 47 47 H 1.09002 * 109.58381 * 113.80217 * 29 13 11 48 48 H 1.09001 * 109.70470 * 353.44846 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0063 -0.6737 -1.1666 5 6 2.0724 0.0515 -2.3141 6 6 1.5847 1.3540 -2.3548 7 6 1.6737 2.0533 -3.5474 8 6 2.2390 1.4391 -4.6495 9 7 2.6917 0.2030 -4.5774 10 6 2.6317 -0.4944 -3.4601 11 6 2.0322 -0.7104 1.2306 12 8 2.6159 -1.7681 1.1244 13 7 1.8327 -0.1701 2.4492 14 6 2.2237 -0.8983 3.6639 15 6 3.1284 0.0035 4.5096 16 6 2.4146 1.3310 4.7748 17 6 2.1357 2.0365 3.4457 18 1 3.0748 2.2059 2.9190 19 6 1.4515 3.3785 3.7137 20 7 2.3736 4.2622 4.4315 21 6 1.9783 5.5256 4.7814 22 1 0.9866 5.8706 4.5285 23 6 2.8522 6.3630 5.4610 24 7 4.0610 5.9428 5.7687 25 14 2.3127 8.0864 5.9389 26 1 2.6505 9.0321 4.8449 27 1 0.8458 8.0999 6.1695 28 1 3.0130 8.4974 7.1822 29 6 1.2197 1.1579 2.5880 30 1 -0.3634 0.5972 0.8363 31 1 -0.3633 0.4257 -0.9354 32 1 -0.3634 -1.0229 0.0990 33 1 1.1477 1.8087 -1.4781 34 1 1.3050 3.0662 -3.6156 35 1 2.3106 1.9793 -5.5820 36 1 3.0172 -1.5030 -3.4383 37 1 1.3333 -1.1610 4.2349 38 1 2.7645 -1.8038 3.3890 39 1 3.3476 -0.4875 5.4577 40 1 4.0588 0.1910 3.9734 41 1 3.0461 1.9650 5.3970 42 1 1.4727 1.1403 5.2893 43 1 0.5588 3.2169 4.3180 44 1 1.1704 3.8387 2.7664 45 1 3.2644 3.9524 4.6582 46 1 4.3409 5.0477 5.5208 47 1 0.2473 1.0627 3.0713 48 1 1.0959 1.6102 1.6040 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690423128.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:48 Heat of formation + Delta-G solvation = -22.740648 kcal Electronic energy + Delta-G solvation = -28957.947646 eV Core-core repulsion = 25013.652376 eV Total energy + Delta-G solvation = -3944.295270 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 333.184 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.30722 -40.34294 -38.64759 -37.62200 -35.17765 -33.63217 -32.66496 -32.51728 -31.52738 -30.29525 -29.77347 -26.25943 -25.37410 -24.78995 -23.96466 -23.20513 -22.94927 -21.73977 -20.26601 -19.36792 -18.87454 -17.50840 -17.37651 -17.11568 -16.64779 -16.19962 -15.88207 -15.24064 -14.91189 -14.77286 -14.64129 -14.51759 -14.20873 -14.06510 -13.77657 -13.69284 -13.39001 -13.09623 -13.03051 -12.89025 -12.64036 -12.60256 -12.38504 -12.07459 -11.82328 -11.62453 -11.18831 -10.94954 -10.80473 -10.55993 -10.54570 -10.37145 -10.15241 -10.07418 -9.92434 -9.85982 -9.27560 -8.96974 -8.81983 -8.76209 -7.09130 -6.17809 -3.18387 0.81056 0.89891 2.15232 2.28634 3.08865 3.46547 3.47763 3.51102 3.65221 3.96441 4.17229 4.23896 4.38954 4.42073 4.48493 4.55398 4.64524 4.75471 4.83119 4.85450 4.89983 4.94031 5.09385 5.13919 5.18996 5.24221 5.38725 5.40813 5.54257 5.57947 5.60363 5.69152 5.72451 5.72870 5.76047 5.83344 5.88389 6.00510 6.05776 6.26183 6.29878 6.42355 6.52427 6.64441 6.81710 7.09751 7.64170 7.72813 7.85938 8.68211 9.14441 10.00817 10.15184 11.30571 Molecular weight = 333.18amu Principal moments of inertia in cm(-1) A = 0.010958 B = 0.002901 C = 0.002424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2554.671791 B = 9650.084117 C =11547.033510 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 H 0.099 0.901 4 O -0.278 6.278 5 C 0.082 3.918 6 C -0.168 4.168 7 C -0.128 4.128 8 C 0.056 3.944 9 N -0.447 5.447 10 C 0.076 3.924 11 C 0.524 3.476 12 O -0.521 6.521 13 N -0.603 5.603 14 C 0.114 3.886 15 C -0.135 4.135 16 C -0.111 4.111 17 C -0.111 4.111 18 H 0.074 0.926 19 C 0.166 3.834 20 N -0.742 5.742 21 C -0.334 4.334 22 H 0.065 0.935 23 C -0.044 4.044 24 N -0.943 5.943 25 Si 1.082 2.918 26 H -0.295 1.295 27 H -0.295 1.295 28 H -0.287 1.287 29 C 0.109 3.891 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.142 0.858 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.165 0.835 37 H 0.070 0.930 38 H 0.091 0.909 39 H 0.076 0.924 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.063 0.937 43 H 0.023 0.977 44 H 0.019 0.981 45 H 0.367 0.633 46 H 0.255 0.745 47 H 0.078 0.922 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.349 -12.855 -13.811 20.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C 0.005 3.995 3 H 0.117 0.883 4 O -0.189 6.189 5 C 0.034 3.966 6 C -0.195 4.195 7 C -0.148 4.148 8 C -0.101 4.101 9 N -0.156 5.156 10 C -0.083 4.083 11 C 0.310 3.690 12 O -0.396 6.396 13 N -0.337 5.337 14 C -0.008 4.008 15 C -0.173 4.173 16 C -0.148 4.148 17 C -0.131 4.131 18 H 0.093 0.907 19 C 0.038 3.962 20 N -0.388 5.388 21 C -0.465 4.465 22 H 0.083 0.917 23 C -0.242 4.242 24 N -0.588 5.588 25 Si 0.913 3.087 26 H -0.223 1.223 27 H -0.221 1.221 28 H -0.213 1.213 29 C -0.014 4.014 30 H 0.105 0.895 31 H 0.095 0.905 32 H 0.095 0.905 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.176 0.824 36 H 0.182 0.818 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.082 0.918 43 H 0.040 0.960 44 H 0.037 0.963 45 H 0.201 0.799 46 H 0.066 0.934 47 H 0.096 0.904 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.380 -12.541 -13.863 20.097 hybrid contribution -0.767 -0.648 0.177 1.019 sum -8.147 -13.188 -13.686 20.679 Atomic orbital electron populations 1.22439 0.92241 1.04750 1.04356 1.22256 0.96063 0.97118 0.84068 0.88321 1.86219 1.80615 1.37352 1.14745 1.20257 0.96798 0.91458 0.88067 1.21836 1.03242 0.94192 1.00218 1.22050 0.98716 1.01177 0.92842 1.22703 0.97083 0.91370 0.98961 1.67750 1.14750 1.07694 1.25437 1.22253 0.98990 1.01032 0.85982 1.19893 0.79616 0.85709 0.83821 1.90725 1.40529 1.22540 1.85796 1.47983 1.61530 1.18907 1.05305 1.21675 0.99072 0.95673 0.84359 1.21953 0.98948 0.96541 0.99892 1.21522 1.01062 0.95307 0.96933 1.21735 0.99410 0.95543 0.96372 0.90745 1.20520 0.92929 0.87651 0.95110 1.42346 1.14022 1.13433 1.68958 1.20035 1.00375 0.91118 1.34949 0.91722 1.25788 0.94814 1.04871 0.98723 1.70865 1.18563 1.19776 1.49611 0.83199 0.74268 0.74618 0.76592 1.22277 1.22126 1.21338 1.21952 0.96804 0.81569 1.01075 0.89503 0.90488 0.90483 0.84041 0.84211 0.82399 0.81818 0.91171 0.89019 0.90565 0.91525 0.90529 0.91787 0.95959 0.96298 0.79907 0.93394 0.90422 0.89990 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.41 8.76 37.15 0.33 -1.09 16 2 C 0.06 0.68 1.80 -27.88 -0.05 0.63 16 3 H 0.10 0.92 5.42 -51.92 -0.28 0.64 16 4 O -0.28 -3.43 9.36 -39.26 -0.37 -3.80 16 5 C 0.08 0.90 6.57 -39.07 -0.26 0.65 16 6 C -0.17 -1.54 8.22 -39.13 -0.32 -1.86 16 7 C -0.13 -1.04 10.11 -39.46 -0.40 -1.44 16 8 C 0.06 0.50 11.18 -17.54 -0.20 0.30 16 9 N -0.45 -4.98 10.35 -13.12 -0.14 -5.12 16 10 C 0.08 0.84 11.14 -17.37 -0.19 0.65 16 11 C 0.52 6.82 7.06 -10.98 -0.08 6.74 16 12 O -0.52 -8.68 15.93 -14.24 -0.23 -8.91 16 13 N -0.60 -6.93 2.97 -172.77 -0.51 -7.44 16 14 C 0.11 1.26 6.44 -3.71 -0.02 1.24 16 15 C -0.14 -1.57 6.08 -26.61 -0.16 -1.73 16 16 C -0.11 -1.50 5.06 -26.69 -0.13 -1.64 16 17 C -0.11 -1.55 2.37 -90.50 -0.21 -1.76 16 18 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 19 C 0.17 2.98 5.65 -4.04 -0.02 2.95 16 20 N -0.74 -17.60 5.32 -59.91 -0.32 -17.92 16 21 C -0.33 -9.08 9.99 -15.06 -0.15 -9.23 16 22 H 0.06 1.73 7.83 -52.49 -0.41 1.32 16 23 C -0.04 -1.25 5.50 -17.43 -0.10 -1.35 16 24 N -0.94 -28.52 13.70 55.49 0.76 -27.76 16 25 Si 1.08 25.28 29.92 -169.99 -5.09 20.20 16 26 H -0.30 -6.71 7.11 56.52 0.40 -6.31 16 27 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 28 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 29 C 0.11 1.15 4.36 -3.72 -0.02 1.14 16 30 H 0.09 0.56 6.06 -51.93 -0.31 0.25 16 31 H 0.08 0.53 6.78 -51.92 -0.35 0.17 16 32 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.14 1.05 5.59 -52.49 -0.29 0.76 16 34 H 0.14 0.78 8.06 -52.49 -0.42 0.35 16 35 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 36 H 0.16 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.09 1.09 7.00 -51.93 -0.36 0.73 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.08 1.25 7.16 -51.93 -0.37 0.88 16 42 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.37 8.98 5.69 -40.82 -0.23 8.74 16 46 H 0.25 7.56 6.77 -40.82 -0.28 7.29 16 47 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 48 H 0.08 0.73 4.96 -51.93 -0.26 0.47 16 LS Contribution 379.89 15.07 5.72 5.72 Total: -1.00 -34.51 379.89 -9.18 -43.68 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: -7.02 Total: 7.15 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -1.99 Total: -5.81 kcal Atomic # 7 Polarization: -58.03 SS G_CDS: -0.21 Total: -58.24 kcal Atomic # 8 Polarization: -12.11 SS G_CDS: -0.59 Total: -12.70 kcal Atomic # 14 Polarization: 25.28 SS G_CDS: -5.09 Total: 20.20 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.51 -9.18 -43.68 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690423128.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.944 kcal (2) G-P(sol) polarization free energy of solvation -34.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds